Ggra5639.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5639.t1
Unique NameGgra5639.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Homology
BLAST of Ggra5639.t1 vs. uniprot
Match: A0A2V3IL58 (ADP-ribosylation factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL58_9FLOR)

HSP 1 Score: 306 bits (783), Expect = 6.820e-104
Identity = 151/194 (77.84%), Postives = 175/194 (90.21%), Query Frame = 0
Query:    1 MGNCFSQQLGKRSRSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKTEKG-AASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLKLKKPVGTPLHAPS 193
            MGNC S  +G+RSRSRGVL+LGLDG+G TTILYQLV GKR+ETIPTLGVNHEK+Q DGL+LDCWDVGGLDKVRPLWRQCFKDADAVIFVVD++DLPRMRLAAEEL KLY+T+   +A++KDRPLLV ANKQDL  AAS+K+VEKVLRIEAL V+C+KV P++A+DRQSL+KGVQWLT+QLK KKPV   +HAPS
Sbjct:    1 MGNCVS--MGRRSRSRGVLVLGLDGAGTTTILYQLVLGKRLETIPTLGVNHEKVQADGLQLDCWDVGGLDKVRPLWRQCFKDADAVIFVVDSTDLPRMRLAAEELAKLYRTDSSTSAAMKDRPLLVFANKQDLRDAASIKMVEKVLRIEALNVTCTKVLPSSANDRQSLVKGVQWLTAQLKKKKPVANRIHAPS 192          
BLAST of Ggra5639.t1 vs. uniprot
Match: R7QEX2 (ArfX2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEX2_CHOCR)

HSP 1 Score: 221 bits (563), Expect = 1.840e-70
Identity = 110/186 (59.14%), Postives = 142/186 (76.34%), Query Frame = 0
Query:    1 MGNCFSQQLGKRSRSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKTEKGAASIK-DRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLKLKKPV 185
            MG C S    + + SRGVL+LGLDG+GATTILYQLV GKR+ETIPTLG+N E + VDGLEL+CWD+GGLD+VR LWRQ  +DADAVIFVVD+SD+ R++LA+ EL  LYK      SI+ DRPLL+ ANKQD   A S + VEKVL++  + V   ++FP +A++R+SLMKG+ WL ++LK + PV
Sbjct:    1 MGACMSASHFRHAGSRGVLVLGLDGAGATTILYQLVLGKRLETIPTLGLNQESVTVDGLELECWDIGGLDQVRTLWRQYSRDADAVIFVVDSSDVERLKLASTELASLYKGHSKRNSIQHDRPLLIFANKQDTPTAVSTQQVEKVLKVNYIHVDTFRIFPCSANNRESLMKGINWLVTELKGRSPV 186          
BLAST of Ggra5639.t1 vs. uniprot
Match: A0A1X6P3E7 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3E7_PORUM)

HSP 1 Score: 182 bits (462), Expect = 2.840e-55
Identity = 96/182 (52.75%), Postives = 127/182 (69.78%), Query Frame = 0
Query:    1 MGNCFSQQLGKRSRSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKTEKGAAS--IKDRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLK 180
            MG C   +  + S SR +L+LGLDGSGATTILYQ+V G+R+ETIPTLG NHE ++ DGLE + WD+GGLDK+RPLWRQ  ++A+ +IFVVD++D  R   AAEEL K +  + G  S  + D PLLV ANKQD+ GAASV  +E+VL + +L V   KV P       SL  G+ W+T++L+
Sbjct:    1 MGGCVPSRERRASNSRVLLLLGLDGSGATTILYQMVLGRRLETIPTLGFNHEVIRYDGLEFELWDIGGLDKMRPLWRQYSREANGIIFVVDSADRSRFPKAAEELKKFFG-DGGRRSFVLPDNPLLVFANKQDVNGAASVPEIEEVLDLSSLPVRSFKVVPCCGRTGASLGIGLDWMTAELQ 181          
BLAST of Ggra5639.t1 vs. uniprot
Match: R7QA83 (ArfX1 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QA83_CHOCR)

HSP 1 Score: 170 bits (430), Expect = 2.570e-50
Identity = 94/187 (50.27%), Postives = 127/187 (67.91%), Query Frame = 0
Query:    1 MGNCFSQQLGKRSRSRG----VLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKTEKGAAS--IKDRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLKL 181
            MG+  S   G+     G    VL++GLDGSG TTILYQ+ +GK++ETIPTLG+N E ++VDG++ + +DVGGL+KVR LWR   K+A+ V +VVD+SD  R+  AAEEL KL+  +K   S  + D PLLVLANKQD+A A S+  V K L +  L V   KV PT A+D  +L +G++W+  QLKL
Sbjct:    1 MGSALSACTGRPGGKDGDLPCVLLVGLDGSGTTTILYQVKHGKKLETIPTLGMNKEIVKVDGMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPNRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDVADAVSIDTVAKDLELHDLPVRNYKVLPTVATDGTNLREGLKWMVDQLKL 187          
BLAST of Ggra5639.t1 vs. uniprot
Match: A0A5J4YGH4 (ADP-ribosylation factor 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YGH4_PORPP)

HSP 1 Score: 152 bits (385), Expect = 1.210e-43
Identity = 84/184 (45.65%), Postives = 116/184 (63.04%), Query Frame = 0
Query:    1 MGNCFSQQLGKRSR--SRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKTEKGAASIKDR--PLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLK 180
            MG   S++ G R R  S+ VL LGLDGSG+TT++YQLV G++++TIPTLG N E +  +G+EL+ +D+GG++KVRP+WRQ   +ADA++FVVD  D PR+  A  EL+K        A +KD+  PLL+  NK DL G   V+ VE+ L I+A   S  K           +  G+ WLT QLK
Sbjct:    1 MGCFSSKEAGARGRGGSKSVLFLGLDGSGSTTVMYQLVLGRKVDTIPTLGFNKEVITYNGIELEMFDLGGVEKVRPVWRQYAPEADAIVFVVDGHDEPRVTQAKGELEKFL------AELKDKSIPLLLFVNKNDLPGYLGVEAVEEKLNIKAFAFSAYKAVGCCGKTGDEIKAGMDWLTDQLK 178          
BLAST of Ggra5639.t1 vs. uniprot
Match: A0A7S2ZXC9 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZXC9_9RHOD)

HSP 1 Score: 152 bits (383), Expect = 3.370e-43
Identity = 77/179 (43.02%), Postives = 117/179 (65.36%), Query Frame = 0
Query:    4 CFSQQLGKRSRS-RGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKT-EKGAASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLK 180
            C S ++ +   + + +L++GLDG+G+TTILY+LV  K ++TIPTLGVN E +   G++ D WD+GGLDK+RPLW+Q  +  DA IFV+D +D  R  LAA+EL+  +   +  +  I   PLLV ANK+DL  A +   +E +L++  L VS  K+ P      ++L +G++WLT +LK
Sbjct:    3 CISSRISRSDGNVKSLLMIGLDGAGSTTILYRLVLNKCIDTIPTLGVNQESLSFGGIDYDIWDMGGLDKMRPLWKQYSRATDAYIFVLDAADQERAILAADELESFFDDIDLKSHEIPGDPLLVYANKKDLPDAMTTSEIENMLKLPELPVSNYKIVPCCGKTGENLREGLEWLTDELK 181          
BLAST of Ggra5639.t1 vs. uniprot
Match: A0A5J4YI30 (ADP-ribosylation factor 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YI30_PORPP)

HSP 1 Score: 153 bits (386), Expect = 2.640e-42
Identity = 84/184 (45.65%), Postives = 117/184 (63.59%), Query Frame = 0
Query:    1 MGNCFSQQLGKRSR--SRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKTEKGAASIKDR--PLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLK 180
            MG   S++ G R+R  S+ VL LGLDGSG+TT++YQLV G++++TIPTLG N E +  +G+EL+ +D+GG++KVRP+WRQ   +ADA++FVVD  D PR+  A  EL+K        A +KD+  PLL+  NK DL G   V+ VE+ L I+A   S  K           +  G+ WLT QLK
Sbjct:  125 MGCFSSKEAGARARGGSKSVLFLGLDGSGSTTVMYQLVLGRKVDTIPTLGFNKEVITYNGIELEMFDLGGVEKVRPVWRQYAPEADAIVFVVDGHDEPRVTQAKGELEKFL------AELKDKSIPLLLFVNKNDLPGYLGVEAVEEKLNIKAFAFSAYKAVGCCGKTGDEIKAGMDWLTDQLK 302          
BLAST of Ggra5639.t1 vs. uniprot
Match: A0A7S1EUU0 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUU0_9RHOD)

HSP 1 Score: 148 bits (373), Expect = 7.620e-42
Identity = 77/178 (43.26%), Postives = 110/178 (61.80%), Query Frame = 0
Query:    4 CFSQQLGKRS-RSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLYKTEKGAASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLK 180
            CF  +  + S  SR VL+LGLDG+G+TT++YQ+V GK+++TIPTLG NHE ++ +G+EL+ +D+GG++KVRP+WRQ   +ADA+IFVVD +D  R   A EEL K Y         K  PLL+  NK DL     +  +E  L      VSC +         +++  G+ WLT +LK
Sbjct:    3 CFQSKEDRPSGSSRSVLMLGLDGAGSTTVMYQIVLGKKVDTIPTLGFNHETVKYNGMELEMFDLGGVEKVRPVWRQYASEADAIIFVVDGNDSARFPQAREELQKFYSD----IDQKRIPLLLFLNKTDLPNCVDIPTLEAELNPSQFPVSCYQTMVCCGKTGENISAGLDWLTEKLK 176          
BLAST of Ggra5639.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: ADP-ribosylation factor 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB82 (LOW QUALITY PROTEIN: ADP-ribosylation factor 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB82)

HSP 1 Score: 145 bits (367), Expect = 1.200e-40
Identity = 77/164 (46.95%), Postives = 111/164 (67.68%), Query Frame = 0
Query:   18 VLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLY--KTEKGAASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQL 179
            VL++GLDG+G TTILYQL  G ++ETIPTLG+N E + V  ++ + +DVGGL+KVR LWR   K+A+ V +VVD SD  R+  A+EEL +L+    +K +  + D PLLVLANK D+ GA  V  +E  L ++ L V   KV P+ A++ ++L +G  W+ +QL
Sbjct:   20 VLLVGLDGTGTTTILYQLKQGHKVETIPTLGLNKEVVTVGDIDFELYDVGGLEKVRALWRTYSKEANGVAYVVDASDSRRLPQASEELKRLFFGDRKKKSLIVPDIPLLVLANKMDVDGALDVDQIEAALDLQDLPVRRYKVLPSVATEGRNLKEGFLWMVAQL 183          
BLAST of Ggra5639.t1 vs. uniprot
Match: A0A7S0BQY1 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQY1_9RHOD)

HSP 1 Score: 144 bits (364), Expect = 1.960e-40
Identity = 74/179 (41.34%), Postives = 114/179 (63.69%), Query Frame = 0
Query:    4 CFSQQLGKRSRSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVNHEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRLAAEELDKLY--KTEKGAASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEALQVSCSKVFPTTASDRQSLMKGVQWLTSQLK 180
            C      K++  R +L+LG+DG+G+TT+LYQLV  +R+ETIPTL  N E +  +G++ + WD+GG DKVRPLW +  ++A A+I+VVD +D  R+ +AA EL KL+   +E         PLL+ ANKQ++ GA +V  + + L +++L  +  K+   +A    +L  G+ WLT QLK
Sbjct:    3 CIQSSEKKQANHRSLLLLGIDGAGSTTVLYQLVQHERVETIPTLAFNRETLAFEGMKYEIWDIGGNDKVRPLWTKYAREAHAIIYVVDATDKTRLPMAAREL-KLFIDDSENNHYPTSKNPLLIFANKQEMDGAKNVDEMREALGMDSLPFTNYKIVGCSAKTGDNLNDGLHWLTQQLK 180          
The following BLAST results are available for this feature:
BLAST of Ggra5639.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IL586.820e-10477.84ADP-ribosylation factor n=1 Tax=Gracilariopsis cho... [more]
R7QEX21.840e-7059.14ArfX2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7... [more]
A0A1X6P3E72.840e-5552.75Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QA832.570e-5050.27ArfX1 n=2 Tax=Rhodymeniophycidae TaxID=2045261 Rep... [more]
A0A5J4YGH41.210e-4345.65ADP-ribosylation factor 2 n=1 Tax=Porphyridium pur... [more]
A0A7S2ZXC93.370e-4343.02Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YI302.640e-4245.65ADP-ribosylation factor 2 n=1 Tax=Porphyridium pur... [more]
A0A7S1EUU07.620e-4243.26Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
LOW QUALITY PROTEIN: ADP-ribosylation factor 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB821.200e-4046.95LOW QUALITY PROTEIN: ADP-ribosylation factor 6-lik... [more]
A0A7S0BQY11.960e-4041.34Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 153..177
score: 21.18
coord: 45..69
score: 25.65
coord: 17..40
score: 41.18
coord: 72..97
score: 35.07
IPR006689Small GTPase superfamily, ARF/SAR typeSMARTSM00178sar_sub_1coord: 3..179
e-value: 4.0E-8
score: 43.0
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 7..178
e-value: 2.2E-45
score: 154.2
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..183
e-value: 2.8E-36
score: 136.5
NoneNo IPR availablePROSITEPS51417ARFcoord: 9..179
score: 14.911911
NoneNo IPR availableCDDcd00878Arf_Arlcoord: 18..178
e-value: 6.50687E-53
score: 164.672
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 17..173
e-value: 1.3E-14
score: 52.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 3..180
e-value: 1.9E-48
score: 166.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..187
IPR024156Small GTPase superfamily, ARF typePANTHERPTHR11711ADP RIBOSYLATION FACTOR-RELATEDcoord: 4..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1220141..1220734 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5639.t1Ggra5639.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1220141..1220734 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5639.t1 ID=Ggra5639.t1|Name=Ggra5639.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MGNCFSQQLGKRSRSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVN
HEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRL
AAEELDKLYKTEKGAASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEAL
QVSCSKVFPTTASDRQSLMKGVQWLTSQLKLKKPVGTPLHAPSGADA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR024156Small_GTPase_ARF