Ggra5639.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5639.t1
Unique NameGgra5639.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1220141..1220734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog101028.EKJ71539
PFAMsArf
Max annot lvl4751|Fungi
KEGG koko:K07941
KEGG Pathwayko04014,ko04072,ko04144,ko04666,map04014,map04072,map04144,map04666
GOsGO:0000139,GO:0000166,GO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0000935,GO:0001558,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006888,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019216,GO:0019220,GO:0019222,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030010,GO:0030029,GO:0030036,GO:0030234,GO:0030307,GO:0030427,GO:0030428,GO:0030447,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032153,GO:0032155,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0036267,GO:0040007,GO:0040008,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044182,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045927,GO:0045937,GO:0046889,GO:0046890,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0048638,GO:0048639,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051017,GO:0051094,GO:0051128,GO:0051130,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051301,GO:0051510,GO:0051512,GO:0051516,GO:0051518,GO:0051519,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0061572,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070783,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0097435,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:1901265,GO:1901363,GO:1903047,GO:1903725,GO:1903727
Evalue5.42e-38
EggNOG OGsCOG1100@1|root,KOG0071@2759|Eukaryota,38I0U@33154|Opisthokonta,3NYP1@4751|Fungi,3QNJ5@4890|Ascomycota,215NM@147550|Sordariomycetes,3TCUH@5125|Hypocreales,1FSI1@110618|Nectriaceae
DescriptionBelongs to the small GTPase superfamily. Arf family
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5639Ggra5639Gracilaria gracilis GNS1m malegenetig00000842_pilon 1220141..1220734 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5639.t1.stop1Ggra5639.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1220141..1220143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5639.t1.CDS1Ggra5639.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1220141..1220734 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5639.t1.exon1Ggra5639.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1220141..1220734 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5639.t1.start1Ggra5639.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1220732..1220734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5639.t1Ggra5639.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1220141..1220734 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5639.t1 ID=Ggra5639.t1|Name=Ggra5639.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MGNCFSQQLGKRSRSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVN
HEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRL
AAEELDKLYKTEKGAASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEAL
QVSCSKVFPTTASDRQSLMKGVQWLTSQLKLKKPVGTPLHAPSGADA*
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spliced messenger RNA

>Ggra5639.t1 ID=Ggra5639.t1|Name=Ggra5639.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000842_pilon:1220141..1220734- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAACTGTTTTTCGCAGCAGTTGGGCAAGCGCTCGCGATCGCGCGG
CGTGCTCATCTTGGGTCTGGATGGCTCGGGTGCCACCACTATCCTGTACC
AGCTGGTGTACGGCAAGCGCATGGAGACCATCCCTACGCTGGGCGTCAAT
CACGAGAAGATGCAGGTGGACGGCCTGGAGCTGGACTGTTGGGACGTTGG
TGGCTTGGACAAGGTGCGACCTCTGTGGAGGCAGTGCTTCAAAGACGCCG
ACGCCGTCATCTTCGTCGTCGACACCAGCGACTTGCCGCGCATGAGGCTG
GCGGCCGAGGAGCTGGACAAGCTCTACAAGACCGAAAAGGGCGCCGCCAG
TATCAAGGACCGCCCGCTGCTGGTGCTAGCAAACAAGCAGGATTTGGCGG
GCGCCGCGTCCGTCAAGGTGGTGGAGAAGGTGCTGCGAATCGAAGCGCTG
CAGGTATCGTGCTCCAAGGTGTTCCCCACTACAGCGTCGGATCGCCAGTC
GTTGATGAAGGGCGTGCAGTGGCTCACGTCGCAGCTCAAACTCAAGAAAC
CGGTTGGAACGCCCTTACATGCGCCCAGTGGCGCCGACGCGTAG
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protein sequence of Ggra5639.t1

>Ggra5639.t1 ID=Ggra5639.t1|Name=Ggra5639.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MGNCFSQQLGKRSRSRGVLILGLDGSGATTILYQLVYGKRMETIPTLGVN
HEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRL
AAEELDKLYKTEKGAASIKDRPLLVLANKQDLAGAASVKVVEKVLRIEAL
QVSCSKVFPTTASDRQSLMKGVQWLTSQLKLKKPVGTPLHAPSGADA*
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mRNA from alignment at tig00000842_pilon:1220141..1220734-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5639.t1 ID=Ggra5639.t1|Name=Ggra5639.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000842_pilon:1220141..1220734- (Gracilaria gracilis GNS1m male)
ATGGGCAACTGTTTTTCGCAGCAGTTGGGCAAGCGCTCGCGATCGCGCGG
CGTGCTCATCTTGGGTCTGGATGGCTCGGGTGCCACCACTATCCTGTACC
AGCTGGTGTACGGCAAGCGCATGGAGACCATCCCTACGCTGGGCGTCAAT
CACGAGAAGATGCAGGTGGACGGCCTGGAGCTGGACTGTTGGGACGTTGG
TGGCTTGGACAAGGTGCGACCTCTGTGGAGGCAGTGCTTCAAAGACGCCG
ACGCCGTCATCTTCGTCGTCGACACCAGCGACTTGCCGCGCATGAGGCTG
GCGGCCGAGGAGCTGGACAAGCTCTACAAGACCGAAAAGGGCGCCGCCAG
TATCAAGGACCGCCCGCTGCTGGTGCTAGCAAACAAGCAGGATTTGGCGG
GCGCCGCGTCCGTCAAGGTGGTGGAGAAGGTGCTGCGAATCGAAGCGCTG
CAGGTATCGTGCTCCAAGGTGTTCCCCACTACAGCGTCGGATCGCCAGTC
GTTGATGAAGGGCGTGCAGTGGCTCACGTCGCAGCTCAAACTCAAGAAAC
CGGTTGGAACGCCCTTACATGCGCCCAGTGGCGCCGACGCGTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:1220141..1220734-

>Ggra5639.t1 ID=Ggra5639.t1|Name=Ggra5639.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000842_pilon:1220141..1220734- (Gracilaria gracilis GNS1m male)
ATGGGCAACTGTTTTTCGCAGCAGTTGGGCAAGCGCTCGCGATCGCGCGG
CGTGCTCATCTTGGGTCTGGATGGCTCGGGTGCCACCACTATCCTGTACC
AGCTGGTGTACGGCAAGCGCATGGAGACCATCCCTACGCTGGGCGTCAAT
CACGAGAAGATGCAGGTGGACGGCCTGGAGCTGGACTGTTGGGACGTTGG
TGGCTTGGACAAGGTGCGACCTCTGTGGAGGCAGTGCTTCAAAGACGCCG
ACGCCGTCATCTTCGTCGTCGACACCAGCGACTTGCCGCGCATGAGGCTG
GCGGCCGAGGAGCTGGACAAGCTCTACAAGACCGAAAAGGGCGCCGCCAG
TATCAAGGACCGCCCGCTGCTGGTGCTAGCAAACAAGCAGGATTTGGCGG
GCGCCGCGTCCGTCAAGGTGGTGGAGAAGGTGCTGCGAATCGAAGCGCTG
CAGGTATCGTGCTCCAAGGTGTTCCCCACTACAGCGTCGGATCGCCAGTC
GTTGATGAAGGGCGTGCAGTGGCTCACGTCGCAGCTCAAACTCAAGAAAC
CGGTTGGAACGCCCTTACATGCGCCCAGTGGCGCCGACGCGTAG
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