Ggra5719.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5719.t1
Unique Name	Ggra5719.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:1442378..1443907 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5719	Ggra5719	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 1442378..1443907 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5719.t1.stop1	Ggra5719.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 1442378..1442380 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5719.t1.CDS1	Ggra5719.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 1442378..1443907 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5719.t1.exon1	Ggra5719.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 1442378..1443907 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5719.t1.start1	Ggra5719.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 1443905..1443907 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5719.t1	Ggra5719.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 1442378..1443907 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:1442378..1443907-
coding sequence from alignment at tig00000842_pilon:1442378..1443907-

mRNA sequence

>Ggra5719.t1 ID=Ggra5719.t1|Name=Ggra5719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MPAFIPPTAPAKLLVSASRRNPLRPAVQMTVAVAAPVRAPKLRRPVQPSK
SPSCVSHPKQAPPPQLQQARDLLNERRYEAARSAFRSLANSDCSSEVLRS
WGCLEGSHGDEQTARDLFTRAVRTASEPATEAAAWNAWALMEQRRGHISA
ARKCFTNGLRIDPIHAPLIQAFAIFEAKYGSKRRAREFFATGAQLNQHSH
RTWIAWAHFEAAQGDISRARFLFKTAVSRANGEDGIAALLAAAKFEERQK
QWNRARDLFREGLLRHGKQCAKILHAWGTTESHCGNFDRSRQLFLATLAC
PGMSGPQVAPTYQAWALAEKKAGNISQARKLFKRGADANPEHVYIWQAWG
IMEQRCREIEAAREYFRKGTEVDSFNAPTWNAWARMEAEQGNLEEARRLF
ACATKADPRHAISWQAWAYVEGRNGNVDASRSLFKKAVSADPTCAPAWQA
WARVEQKAGNFKTARSLFQKGIDADPTHIAVWQAWSQMEEKLGEWNSGPA
CSLPKHRTA*

spliced messenger RNA

>Ggra5719.t1 ID=Ggra5719.t1|Name=Ggra5719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000842_pilon:1442378..1443907- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCTTTCATCCCACCCACGGCTCCGGCAAAGCTCCTCGTCAGTGC
GTCGCGTCGCAATCCGCTTCGTCCTGCCGTGCAGATGACTGTTGCGGTCG
CCGCGCCAGTTCGCGCGCCCAAACTCCGCCGCCCCGTGCAGCCATCGAAG
AGCCCGTCCTGCGTCAGTCACCCGAAACAAGCTCCTCCCCCGCAATTGCA
GCAGGCACGTGACCTGTTGAACGAGCGTCGTTATGAAGCCGCGCGCTCCG
CATTCCGTTCCTTGGCCAACTCTGATTGTAGTTCCGAAGTGCTTCGCTCC
TGGGGTTGTCTGGAAGGTTCTCACGGTGATGAACAAACTGCCCGTGATTT
GTTTACTCGTGCTGTGAGGACTGCGTCGGAACCTGCTACCGAGGCCGCTG
CGTGGAACGCTTGGGCGCTCATGGAACAGAGAAGGGGCCATATTTCAGCC
GCAAGGAAGTGCTTCACAAACGGATTGCGAATCGATCCCATCCACGCACC
ACTTATCCAGGCCTTCGCTATATTCGAAGCAAAGTACGGAAGTAAGCGCA
GGGCGCGTGAATTTTTTGCCACCGGGGCCCAGCTTAACCAACATTCCCAC
CGCACATGGATTGCGTGGGCTCATTTTGAAGCGGCGCAAGGTGACATTTC
CCGTGCCAGGTTTTTGTTTAAGACCGCCGTCTCGAGGGCTAACGGTGAAG
ATGGTATTGCTGCGTTGTTGGCCGCGGCTAAGTTTGAAGAGAGGCAAAAA
CAATGGAACAGAGCGCGAGATCTCTTCCGCGAAGGTCTGCTCCGACATGG
TAAACAGTGCGCCAAGATCCTCCACGCATGGGGAACGACGGAGAGTCATT
GTGGAAATTTTGATCGTTCACGACAGCTGTTTTTGGCCACCTTGGCTTGT
CCAGGTATGTCTGGCCCGCAGGTAGCCCCCACTTATCAAGCATGGGCTCT
TGCTGAAAAGAAAGCTGGTAACATATCACAAGCGAGGAAGCTTTTTAAGC
GCGGCGCTGACGCAAACCCAGAGCATGTCTATATTTGGCAAGCATGGGGC
ATCATGGAACAACGCTGCCGCGAGATAGAGGCAGCCCGAGAGTATTTCAG
GAAGGGAACTGAAGTGGATTCGTTCAACGCTCCTACATGGAATGCTTGGG
CTAGAATGGAAGCCGAACAAGGCAACCTGGAAGAAGCACGCCGTTTGTTT
GCGTGTGCCACCAAAGCTGACCCGCGCCATGCTATCAGCTGGCAAGCGTG
GGCTTATGTAGAGGGGCGAAACGGAAATGTAGATGCCTCTCGATCTTTGT
TCAAGAAGGCTGTCAGTGCTGACCCTACGTGTGCTCCTGCGTGGCAGGCA
TGGGCTCGTGTGGAACAGAAAGCTGGCAACTTTAAGACTGCTCGTTCTCT
GTTCCAGAAGGGCATCGATGCTGATCCAACACATATTGCTGTGTGGCAGG
CGTGGTCGCAAATGGAGGAGAAGTTGGGAGAATGGAATAGTGGCCCCGCG
TGTAGTCTCCCGAAACACCGCACTGCATGA

protein sequence of Ggra5719.t1

>Ggra5719.t1 ID=Ggra5719.t1|Name=Ggra5719.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MPAFIPPTAPAKLLVSASRRNPLRPAVQMTVAVAAPVRAPKLRRPVQPSK
SPSCVSHPKQAPPPQLQQARDLLNERRYEAARSAFRSLANSDCSSEVLRS
WGCLEGSHGDEQTARDLFTRAVRTASEPATEAAAWNAWALMEQRRGHISA
ARKCFTNGLRIDPIHAPLIQAFAIFEAKYGSKRRAREFFATGAQLNQHSH
RTWIAWAHFEAAQGDISRARFLFKTAVSRANGEDGIAALLAAAKFEERQK
QWNRARDLFREGLLRHGKQCAKILHAWGTTESHCGNFDRSRQLFLATLAC
PGMSGPQVAPTYQAWALAEKKAGNISQARKLFKRGADANPEHVYIWQAWG
IMEQRCREIEAAREYFRKGTEVDSFNAPTWNAWARMEAEQGNLEEARRLF
ACATKADPRHAISWQAWAYVEGRNGNVDASRSLFKKAVSADPTCAPAWQA
WARVEQKAGNFKTARSLFQKGIDADPTHIAVWQAWSQMEEKLGEWNSGPA
CSLPKHRTA*

mRNA from alignment at tig00000842_pilon:1442378..1443907-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5719.t1 ID=Ggra5719.t1|Name=Ggra5719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000842_pilon:1442378..1443907- (Gracilaria gracilis GNS1m male)
ATGCCCGCTTTCATCCCACCCACGGCTCCGGCAAAGCTCCTCGTCAGTGC
GTCGCGTCGCAATCCGCTTCGTCCTGCCGTGCAGATGACTGTTGCGGTCG
CCGCGCCAGTTCGCGCGCCCAAACTCCGCCGCCCCGTGCAGCCATCGAAG
AGCCCGTCCTGCGTCAGTCACCCGAAACAAGCTCCTCCCCCGCAATTGCA
GCAGGCACGTGACCTGTTGAACGAGCGTCGTTATGAAGCCGCGCGCTCCG
CATTCCGTTCCTTGGCCAACTCTGATTGTAGTTCCGAAGTGCTTCGCTCC
TGGGGTTGTCTGGAAGGTTCTCACGGTGATGAACAAACTGCCCGTGATTT
GTTTACTCGTGCTGTGAGGACTGCGTCGGAACCTGCTACCGAGGCCGCTG
CGTGGAACGCTTGGGCGCTCATGGAACAGAGAAGGGGCCATATTTCAGCC
GCAAGGAAGTGCTTCACAAACGGATTGCGAATCGATCCCATCCACGCACC
ACTTATCCAGGCCTTCGCTATATTCGAAGCAAAGTACGGAAGTAAGCGCA
GGGCGCGTGAATTTTTTGCCACCGGGGCCCAGCTTAACCAACATTCCCAC
CGCACATGGATTGCGTGGGCTCATTTTGAAGCGGCGCAAGGTGACATTTC
CCGTGCCAGGTTTTTGTTTAAGACCGCCGTCTCGAGGGCTAACGGTGAAG
ATGGTATTGCTGCGTTGTTGGCCGCGGCTAAGTTTGAAGAGAGGCAAAAA
CAATGGAACAGAGCGCGAGATCTCTTCCGCGAAGGTCTGCTCCGACATGG
TAAACAGTGCGCCAAGATCCTCCACGCATGGGGAACGACGGAGAGTCATT
GTGGAAATTTTGATCGTTCACGACAGCTGTTTTTGGCCACCTTGGCTTGT
CCAGGTATGTCTGGCCCGCAGGTAGCCCCCACTTATCAAGCATGGGCTCT
TGCTGAAAAGAAAGCTGGTAACATATCACAAGCGAGGAAGCTTTTTAAGC
GCGGCGCTGACGCAAACCCAGAGCATGTCTATATTTGGCAAGCATGGGGC
ATCATGGAACAACGCTGCCGCGAGATAGAGGCAGCCCGAGAGTATTTCAG
GAAGGGAACTGAAGTGGATTCGTTCAACGCTCCTACATGGAATGCTTGGG
CTAGAATGGAAGCCGAACAAGGCAACCTGGAAGAAGCACGCCGTTTGTTT
GCGTGTGCCACCAAAGCTGACCCGCGCCATGCTATCAGCTGGCAAGCGTG
GGCTTATGTAGAGGGGCGAAACGGAAATGTAGATGCCTCTCGATCTTTGT
TCAAGAAGGCTGTCAGTGCTGACCCTACGTGTGCTCCTGCGTGGCAGGCA
TGGGCTCGTGTGGAACAGAAAGCTGGCAACTTTAAGACTGCTCGTTCTCT
GTTCCAGAAGGGCATCGATGCTGATCCAACACATATTGCTGTGTGGCAGG
CGTGGTCGCAAATGGAGGAGAAGTTGGGAGAATGGAATAGTGGCCCCGCG
TGTAGTCTCCCGAAACACCGCACTGCATGA

Coding sequence (CDS) from alignment at tig00000842_pilon:1442378..1443907-

>Ggra5719.t1 ID=Ggra5719.t1|Name=Ggra5719.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000842_pilon:1442378..1443907- (Gracilaria gracilis GNS1m male)
ATGCCCGCTTTCATCCCACCCACGGCTCCGGCAAAGCTCCTCGTCAGTGC
GTCGCGTCGCAATCCGCTTCGTCCTGCCGTGCAGATGACTGTTGCGGTCG
CCGCGCCAGTTCGCGCGCCCAAACTCCGCCGCCCCGTGCAGCCATCGAAG
AGCCCGTCCTGCGTCAGTCACCCGAAACAAGCTCCTCCCCCGCAATTGCA
GCAGGCACGTGACCTGTTGAACGAGCGTCGTTATGAAGCCGCGCGCTCCG
CATTCCGTTCCTTGGCCAACTCTGATTGTAGTTCCGAAGTGCTTCGCTCC
TGGGGTTGTCTGGAAGGTTCTCACGGTGATGAACAAACTGCCCGTGATTT
GTTTACTCGTGCTGTGAGGACTGCGTCGGAACCTGCTACCGAGGCCGCTG
CGTGGAACGCTTGGGCGCTCATGGAACAGAGAAGGGGCCATATTTCAGCC
GCAAGGAAGTGCTTCACAAACGGATTGCGAATCGATCCCATCCACGCACC
ACTTATCCAGGCCTTCGCTATATTCGAAGCAAAGTACGGAAGTAAGCGCA
GGGCGCGTGAATTTTTTGCCACCGGGGCCCAGCTTAACCAACATTCCCAC
CGCACATGGATTGCGTGGGCTCATTTTGAAGCGGCGCAAGGTGACATTTC
CCGTGCCAGGTTTTTGTTTAAGACCGCCGTCTCGAGGGCTAACGGTGAAG
ATGGTATTGCTGCGTTGTTGGCCGCGGCTAAGTTTGAAGAGAGGCAAAAA
CAATGGAACAGAGCGCGAGATCTCTTCCGCGAAGGTCTGCTCCGACATGG
TAAACAGTGCGCCAAGATCCTCCACGCATGGGGAACGACGGAGAGTCATT
GTGGAAATTTTGATCGTTCACGACAGCTGTTTTTGGCCACCTTGGCTTGT
CCAGGTATGTCTGGCCCGCAGGTAGCCCCCACTTATCAAGCATGGGCTCT
TGCTGAAAAGAAAGCTGGTAACATATCACAAGCGAGGAAGCTTTTTAAGC
GCGGCGCTGACGCAAACCCAGAGCATGTCTATATTTGGCAAGCATGGGGC
ATCATGGAACAACGCTGCCGCGAGATAGAGGCAGCCCGAGAGTATTTCAG
GAAGGGAACTGAAGTGGATTCGTTCAACGCTCCTACATGGAATGCTTGGG
CTAGAATGGAAGCCGAACAAGGCAACCTGGAAGAAGCACGCCGTTTGTTT
GCGTGTGCCACCAAAGCTGACCCGCGCCATGCTATCAGCTGGCAAGCGTG
GGCTTATGTAGAGGGGCGAAACGGAAATGTAGATGCCTCTCGATCTTTGT
TCAAGAAGGCTGTCAGTGCTGACCCTACGTGTGCTCCTGCGTGGCAGGCA
TGGGCTCGTGTGGAACAGAAAGCTGGCAACTTTAAGACTGCTCGTTCTCT
GTTCCAGAAGGGCATCGATGCTGATCCAACACATATTGCTGTGTGGCAGG
CGTGGTCGCAAATGGAGGAGAAGTTGGGAGAATGGAATAGTGGCCCCGCG
TGTAGTCTCCCGAAACACCGCACTGCATGA