Ggra5719.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5719.t1
Unique NameGgra5719.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length510
Homology
BLAST of Ggra5719.t1 vs. uniprot
Match: A0A2V3IS27 (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS27_9FLOR)

HSP 1 Score: 228 bits (581), Expect = 7.450e-65
Identity = 215/354 (60.73%), Postives = 240/354 (67.80%), Query Frame = 0
Query:    1 MPAFIPPTAPAKLLVSASRRNPLRPAVQMTVAVAAP-----VRAPKLRRPVQPSK----SPSCVSHPKQAPPPQLQQARDLLNERRYEAARSAFRSLANSDCSSEVLRSWGCLEGSHGDEQTARDLFTRAVRTASEPATEAAAWNAWALMEQRRGHISAARKCFTNGLRIDPIHAPLIQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTAVSRANGEDGIAALLAAAKFEERQKQWNRARDLFREGLLRHGKQCAKILHAWGTTESHCGNFDRSRQLFLATLACPGMSGPQVXXXXXXXXXXXXXXXXXXXXXXXFKRGADANPEHVYI 345
            M AFIPPTAP+KL + A R  P   A+++   VAAP          LRRP+ P +    + S   HP   P   L+  R LL++R+Y+AAR AFR +A  DC SEVLRSW  LE SHGDE  AR LF R+V+ AS P+ EAAAWNAWALMEQR+GHI+AARKCF NGLR+DP H PL QA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TAV+RA G+DGIAALL                    EGL R+G QCAKILH                   L+TLACPGMSG        XXXXXXXXXXXXXXXXXXF RGA ANP+HVYI
Sbjct:    1 MTAFIPPTAPSKLPLRAQRAFPTCSAMRVAATVAAPSAXXXXXXXXLRRPMPPPQRRKPASSETHHPHVEPSSALRHVRALLSQRQYDAARDAFRDIAQIDCCSEVLRSWAFLEASHGDEHLARSLFIRSVKAASLPSMEAAAWNAWALMEQRKGHIAAARKCFENGLRVDPTHPPLCQAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVTRAEGDDGIAALLXXXXXXXXXXXXXXXXXXXXEGLSRYGNQCAKILHXXXXXXXXXXXXXXXXXXXLSTLACPGMSGTNTAPTYQXXXXXXXXXXXXXXXXXXFARGAQANPQHVYI 354          
BLAST of Ggra5719.t1 vs. uniprot
Match: R7QTR1 (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTR1_CHOCR)

HSP 1 Score: 122 bits (306), Expect = 8.300e-27
Identity = 85/242 (35.12%), Postives = 107/242 (44.21%), Query Frame = 0
Query:  104 LEGSHGDEQTARDLFTRAVRTASEPATEAAAWNAWALMEQRRGHISAARKCFTNGLRIDPIHAPLIQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTAVSRANGEDGIAALLAAAKFEERQKQWNRARDLFREGLLRHGKQCAKILHAWGTTESHCGNFDRSRQLFLATLACPGMSGPQVXXXXXXXXXXXXXXXXXXXXXXXFKRGADANPEHVYI 345
            +E  HGDEQ AR+LF RA+  A  P  EAAAWNAWALMEQR+G+I+ ARKCF NGL++DP HAPL QA                                                    K A+S A+G+D + A+L                   ++GL R+G+                          ++TL CPGM+G         XXXXXXXXXX       F RGA+ANP+H YI
Sbjct:    1 MEALHGDEQKARELFARAIHVARSPHIEAAAWNAWALMEQRKGNIATARKCFVNGLKVDPSHAPLCQAFAIFESKYGLKRRARELFSRGAQFNKTNHRTWIAWANFEANEDNFTKATLLFKAALSNADGDDCVTAILXXXXXXXXXXXXXXXXXXXQQGLTRYGQNXXXXXXXXXXXXXXXXXXXXXXXXXISTLECPGMTGVDAAPTYQAXXXXXXXXXXIGSARKLFARGAEANPKHAYI 242          
BLAST of Ggra5719.t1 vs. uniprot
Match: A0A7S1ESH8 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESH8_9RHOD)

HSP 1 Score: 119 bits (299), Expect = 3.600e-25
Identity = 116/236 (49.15%), Postives = 154/236 (65.25%), Query Frame = 0
Query:   66 LQQARDLLNERRYEAARSAFRSLANS-DCSSEVLRSWGCLEGSHGDEQTARDLFTRAVRTASEPATEAAAWNAWALMEQRRGHISAARKCFTNGLRIDPIHAPLIQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTAVSRANGEDGIAALLAAAKFEERQKQWNRARDLFREGLLRHGKQCAKILHAWGTTESHCGNFDRSRQLFLATLAC 300
            + Q R LL+ ++   AR   + LA+S +    VLR WG LEG +G+    R LF+ A+++AS  A EAAAW+AWA++EQR G++S ARKCF NGLR DP H P+ Q+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +A+  A+ ED + A LA A+FE++ K+ + +R ++RE L +H K   K LH+    E+H G++  +  LF   L C
Sbjct:  115 MDQVRALLHVKQVGKARDILQKLADSTNRDPRVLRMWGWLEGRNGNLALGRSLFSEAIKSASG-ADEAAAWSAWAMIEQRAGNLSGARKCFVNGLRADPAHVPIYQSFAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELNHATARSLYWSAIKAASPED-VVAKLAYAQFEQKSKKIDLSRAMYREILEQHPKN-VKALHSLANLEAHSGDYTLAENLFKKCLKC 347          
BLAST of Ggra5719.t1 vs. uniprot
Match: A0A1X6P8Z8 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8Z8_PORUM)

HSP 1 Score: 89.4 bits (220), Expect = 3.820e-15
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 0
Query:   94 SSEVLRSWGCLEGSHGDEQTARDLFTRAVRTASEPATEAAAWNAWALMEQRRGHISAARKCFTNGLRIDPIHAPLIQA 171
            SS VLR+ G L  +  D + AR LFT AV  A  P +EAAAW AWALMEQR G+ + ARKCF NGLR D  HAPL QA
Sbjct:  230 SSGVLRAAGWLHATVDDVEVARSLFTAAVERADSPPSEAAAWAAWALMEQRLGNTATARKCFVNGLRADVGHAPLCQA 307          
The following BLAST results are available for this feature:
BLAST of Ggra5719.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IS277.450e-6560.73PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
R7QTR18.300e-2735.12TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S1ESH83.600e-2549.15Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6P8Z83.820e-1560.26Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 95..128
e-value: 310.0
score: 1.8
coord: 343..376
e-value: 46.0
score: 9.1
coord: 236..269
e-value: 190.0
score: 3.6
coord: 132..165
e-value: 2.5
score: 17.1
coord: 200..233
e-value: 350.0
score: 1.4
coord: 411..444
e-value: 34.0
score: 10.3
coord: 377..410
e-value: 15.0
score: 13.5
coord: 309..342
e-value: 15.0
score: 13.4
coord: 445..478
e-value: 1.1
score: 18.3
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 445..478
score: 8.4669
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 357..389
e-value: 0.41
score: 19.7
coord: 285..321
e-value: 310.0
score: 4.4
coord: 391..423
e-value: 61.0
score: 9.7
coord: 323..355
e-value: 0.12
score: 21.5
coord: 180..212
e-value: 2.7
score: 17.0
coord: 214..248
e-value: 24.0
score: 12.6
coord: 459..491
e-value: 0.0013
score: 28.0
coord: 425..457
e-value: 0.083
score: 22.0
coord: 146..178
e-value: 150.0
score: 6.8
coord: 109..144
e-value: 2.6
score: 17.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 379..500
e-value: 3.8E-17
score: 64.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 64..234
e-value: 1.6E-25
score: 91.9
coord: 235..378
e-value: 8.8E-21
score: 76.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 68..231
NoneNo IPR availablePFAMPF13428TPR_14coord: 447..487
e-value: 9.0E-6
score: 26.1
NoneNo IPR availablePFAMPF13432TPR_16coord: 383..442
e-value: 6.8E-4
score: 20.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..63
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 267..483
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 75..264
coord: 272..494

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1442378..1443907 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5719.t1Ggra5719.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1442378..1443907 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5719.t1 ID=Ggra5719.t1|Name=Ggra5719.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MPAFIPPTAPAKLLVSASRRNPLRPAVQMTVAVAAPVRAPKLRRPVQPSK
SPSCVSHPKQAPPPQLQQARDLLNERRYEAARSAFRSLANSDCSSEVLRS
WGCLEGSHGDEQTARDLFTRAVRTASEPATEAAAWNAWALMEQRRGHISA
ARKCFTNGLRIDPIHAPLIQAFAIFEAKYGSKRRAREFFATGAQLNQHSH
RTWIAWAHFEAAQGDISRARFLFKTAVSRANGEDGIAALLAAAKFEERQK
QWNRARDLFREGLLRHGKQCAKILHAWGTTESHCGNFDRSRQLFLATLAC
PGMSGPQVAPTYQAWALAEKKAGNISQARKLFKRGADANPEHVYIWQAWG
IMEQRCREIEAAREYFRKGTEVDSFNAPTWNAWARMEAEQGNLEEARRLF
ACATKADPRHAISWQAWAYVEGRNGNVDASRSLFKKAVSADPTCAPAWQA
WARVEQKAGNFKTARSLFQKGIDADPTHIAVWQAWSQMEEKLGEWNSGPA
CSLPKHRTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like