Ggra5624.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5624.t1
Unique NameGgra5624.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1187521..1188105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5624Ggra5624Gracilaria gracilis GNS1m malegenetig00000842_pilon 1187521..1188105 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5624.t1.stop1Ggra5624.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1187521..1187523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5624.t1.CDS1Ggra5624.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1187521..1188105 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5624.t1.exon1Ggra5624.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1187521..1188105 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5624.t1.start1Ggra5624.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1188103..1188105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5624.t1Ggra5624.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1187521..1188105 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5624.t1 ID=Ggra5624.t1|Name=Ggra5624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MLKKWSPVAVPSPSSFASLRRERRLPTVRRVCLEFVSVRLIVQSITMSSL
NFVLPSPLTARTLPLPVAATNSTFVARPLLLTAARSRSATLRMSADSTRE
DGYVIRESEYRDPDVDSDDDSGDGFMGEAEMDDILGVSMPDDLASFERRE
IQNTQTREELVEKLKEIKFRRRDVMVDRRRGMGMDNAENYLRNL*
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spliced messenger RNA

>Ggra5624.t1 ID=Ggra5624.t1|Name=Ggra5624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000842_pilon:1187521..1188105- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAAAAAGTGGAGTCCAGTTGCCGTGCCGTCGCCATCCTCCTTCGC
CAGTCTTCGCAGGGAAAGAAGGTTACCTACCGTACGCAGAGTCTGTCTTG
AGTTCGTTTCCGTTCGTCTCATTGTTCAATCCATCACCATGTCCTCCCTC
AATTTCGTTCTGCCGTCTCCTCTCACAGCGCGCACGCTGCCGTTGCCTGT
CGCTGCCACAAACTCGACCTTCGTCGCGCGTCCGCTACTGCTCACTGCTG
CTCGCTCACGCTCTGCTACGCTTCGTATGTCCGCCGACTCCACCCGCGAA
GATGGCTACGTCATCCGCGAATCTGAGTACCGTGACCCGGACGTGGATTC
GGACGACGACTCTGGTGACGGCTTCATGGGCGAGGCCGAAATGGATGACA
TTCTTGGAGTTTCCATGCCGGACGACCTCGCGTCTTTTGAGAGGAGGGAG
ATTCAGAACACCCAGACGAGGGAGGAGTTGGTTGAGAAGCTGAAGGAGAT
AAAGTTCAGGAGGAGGGACGTTATGGTGGATAGGAGGAGGGGCATGGGTA
TGGACAACGCCGAAAATTATTTGAGGAACCTGTGA
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protein sequence of Ggra5624.t1

>Ggra5624.t1 ID=Ggra5624.t1|Name=Ggra5624.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MLKKWSPVAVPSPSSFASLRRERRLPTVRRVCLEFVSVRLIVQSITMSSL
NFVLPSPLTARTLPLPVAATNSTFVARPLLLTAARSRSATLRMSADSTRE
DGYVIRESEYRDPDVDSDDDSGDGFMGEAEMDDILGVSMPDDLASFERRE
IQNTQTREELVEKLKEIKFRRRDVMVDRRRGMGMDNAENYLRNL*
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mRNA from alignment at tig00000842_pilon:1187521..1188105-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5624.t1 ID=Ggra5624.t1|Name=Ggra5624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000842_pilon:1187521..1188105- (Gracilaria gracilis GNS1m male)
ATGCTTAAAAAGTGGAGTCCAGTTGCCGTGCCGTCGCCATCCTCCTTCGC
CAGTCTTCGCAGGGAAAGAAGGTTACCTACCGTACGCAGAGTCTGTCTTG
AGTTCGTTTCCGTTCGTCTCATTGTTCAATCCATCACCATGTCCTCCCTC
AATTTCGTTCTGCCGTCTCCTCTCACAGCGCGCACGCTGCCGTTGCCTGT
CGCTGCCACAAACTCGACCTTCGTCGCGCGTCCGCTACTGCTCACTGCTG
CTCGCTCACGCTCTGCTACGCTTCGTATGTCCGCCGACTCCACCCGCGAA
GATGGCTACGTCATCCGCGAATCTGAGTACCGTGACCCGGACGTGGATTC
GGACGACGACTCTGGTGACGGCTTCATGGGCGAGGCCGAAATGGATGACA
TTCTTGGAGTTTCCATGCCGGACGACCTCGCGTCTTTTGAGAGGAGGGAG
ATTCAGAACACCCAGACGAGGGAGGAGTTGGTTGAGAAGCTGAAGGAGAT
AAAGTTCAGGAGGAGGGACGTTATGGTGGATAGGAGGAGGGGCATGGGTA
TGGACAACGCCGAAAATTATTTGAGGAACCTGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1187521..1188105-

>Ggra5624.t1 ID=Ggra5624.t1|Name=Ggra5624.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000842_pilon:1187521..1188105- (Gracilaria gracilis GNS1m male)
ATGCTTAAAAAGTGGAGTCCAGTTGCCGTGCCGTCGCCATCCTCCTTCGC
CAGTCTTCGCAGGGAAAGAAGGTTACCTACCGTACGCAGAGTCTGTCTTG
AGTTCGTTTCCGTTCGTCTCATTGTTCAATCCATCACCATGTCCTCCCTC
AATTTCGTTCTGCCGTCTCCTCTCACAGCGCGCACGCTGCCGTTGCCTGT
CGCTGCCACAAACTCGACCTTCGTCGCGCGTCCGCTACTGCTCACTGCTG
CTCGCTCACGCTCTGCTACGCTTCGTATGTCCGCCGACTCCACCCGCGAA
GATGGCTACGTCATCCGCGAATCTGAGTACCGTGACCCGGACGTGGATTC
GGACGACGACTCTGGTGACGGCTTCATGGGCGAGGCCGAAATGGATGACA
TTCTTGGAGTTTCCATGCCGGACGACCTCGCGTCTTTTGAGAGGAGGGAG
ATTCAGAACACCCAGACGAGGGAGGAGTTGGTTGAGAAGCTGAAGGAGAT
AAAGTTCAGGAGGAGGGACGTTATGGTGGATAGGAGGAGGGGCATGGGTA
TGGACAACGCCGAAAATTATTTGAGGAACCTGTGA
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