Ggra5709.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5709.t1
Unique NameGgra5709.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Homology
BLAST of Ggra5709.t1 vs. uniprot
Match: A0A2V3IVH5 (Protein RTF2-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVH5_9FLOR)

HSP 1 Score: 233 bits (593), Expect = 8.650e-74
Identity = 130/237 (54.85%), Postives = 163/237 (68.78%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALAHIERVKRDTARVCMVRENGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAV----HSDADREQAS--GLSDDAQICVACSQRGERIPLGLSVEERQIRLCALLDSRRRXXXXXXXXXXXVT-DADSSPTKRSKQSELE-PQPA 229
            MGGDGGTLNNSRHEHTRLRA VLG +  A+Q+  KRQRASVTHCE SK  L PPH+VVD LGLLYNKDALI  +LHRAR K ++H A +HI  +K+DTA V +V +NG F+CPVTKKVVT  G FSVGW CGCVTA +  V+ AV    H DA  + AS    S + Q+C++C++ GERIPLG++ EERQ  L  +L +R +           +  DAD   +K  K ++ + PQP+
Sbjct:    1 MGGDGGTLNNSRHEHTRLRARVLGHSSPASQKLRKRQRASVTHCEASKMALQPPHVVVDRLGLLYNKDALISCLLHRARHK-SRH-AFSHIASLKKDTAHVNLVEQNGQFICPVTKKVVTAEGSFSVGWSCGCVTANVVYVQRAVRAGRHQDAPSDVASTTSSSQEPQVCISCAKMGERIPLGMTFEERQAVLERVLAAREKSRSLKKKKRKSIANDADPPVSKIRKLTDPDSPQPS 235          
BLAST of Ggra5709.t1 vs. uniprot
Match: R7QHZ7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHZ7_CHOCR)

HSP 1 Score: 138 bits (347), Expect = 4.240e-37
Identity = 79/169 (46.75%), Postives = 102/169 (60.36%), Query Frame = 0
Query:   18 LRATVLGATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQK---RTQHDALAHIERVKRDTARVCMVRENGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDADREQASGLSDDAQICVACSQRGERIPLGLSVEER 183
            +RA + G +  A        RASVTHC LSK  L PPH+VVD  G LYNKDAL+ Y+L R  +K     + +ALAHI  +KRDTARV    +    VCPVT+KV +EGG F VGW CGCVTA + +VE     + + E+     +    CVAC  +G R+ LGL +E+R
Sbjct:    1 MRAVLYGKSTRAADT----SRASVTHCALSKTSLRPPHVVVDRAGNLYNKDALLHYVLARRARKGPATAEGEALAHIRSIKRDTARVQCGADG--LVCPVTRKVASEGGGFGVGWECGCVTARV-NVEGVRGKEGEGEEGGREVN----CVACQAKGSRVRLGLRLEDR 158          
BLAST of Ggra5709.t1 vs. uniprot
Match: M2YAC0 (Replication termination factor 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2YAC0_GALSU)

HSP 1 Score: 86.7 bits (213), Expect = 6.880e-17
Identity = 67/206 (32.52%), Postives = 104/206 (50.49%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLG-------ATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQH-----DALAHIERVKR--DTARVCMVRENGVF--VCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDADREQASGLSDDAQICVACSQRG----ERIPLGLSVEERQIR 186
            MGGDGG+LNN+R E  ++R  +LG         P  T++      A+   C +S++PL PP +V   LG L+NK+ALI ++L R  + + +      DA  HI+ +K   D +R     E   F  +CPVT +  +   RF V W+CGC+ +     E+A+      +   G S+ +Q C  C   G    + + L  + EER+ R
Sbjct:    1 MGGDGGSLNNTRLELVQVRKDILGKRKKSSNGAPGDTKE------ANYRTCAISREPLRPP-VVACKLGYLFNKEALIYFLLERKAKTKQEELYNSTDAFQHIKSLKDVVDCSRSLRGDEESGFRLMCPVTLEEASSKRRFYVLWKCGCIVS-----ENALRGTGFMK---GESNHSQSCPVCYSSGLTQTDLVLLNPTAEEREKR 191          
BLAST of Ggra5709.t1 vs. uniprot
Match: A0A7S3A483 (Replication termination factor 2 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A483_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 3.180e-16
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALAHIERVK-RDTARVCMVRE--NGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDADREQASGLSDDAQICVACSQ 169
            MGGDGG+LNNSR E  R+R  ++G   ++  ++   +R   T C +S++ L  P +V   LG LYNK+ALI  IL  AR  RT+    AH+  +K     ++ +V +  N VF CP++ K  T   +F V W CG          H V   A  +    L  + + CV C Q
Sbjct:    1 MGGDGGSLNNSRMELVRVRKEMMGKGSSSVVEKDVTERDRWTTCAVSRERLKAP-VVACRLGYLYNKEALINLILDSAR--RTRMPEFAHVRSLKDMIECKLELVEDGKNAVFKCPISLKEATGAIKFCVMWGCG----------HVVSEQALNQ----LKKEEKKCVLCEQ 155          
BLAST of Ggra5709.t1 vs. uniprot
Match: A0A3G2S8J1 (Replication termination factor 2 n=2 Tax=Malassezia restricta TaxID=76775 RepID=A0A3G2S8J1_9BASI)

HSP 1 Score: 77.8 bits (190), Expect = 7.130e-14
Identity = 54/165 (32.73%), Postives = 85/165 (51.52%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQ--KRTQHDALAHIERVKRDTARVCM------VRENG-----VFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDADRE 152
            MG DGG++   R +  R + T + A     + R  R     T C LS+QPL PP +V+D LG LYNK+AL+ Y++ RA++    ++H+   H++ VK D  +V +        E G      + CP+T++V+    +F   W CGCV +     E  +   + RE
Sbjct:    1 MGNDGGSIAR-RDDLVRTKDTSVRAAVDDEEARHSRW----TLCCLSRQPLQPP-VVIDRLGQLYNKEALLEYMIRRAKKAASASEHEVARHVKSVKADVRQVTLHANRVQEAERGDIHYFPYACPLTQRVMNGKHKFVCLWPCGCVVSETGLRETCLAGQSKRE 159          
BLAST of Ggra5709.t1 vs. uniprot
Match: A0A1Y1WA02 (Replication termination factor 2 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WA02_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 2.500e-11
Identity = 54/162 (33.33%), Postives = 76/162 (46.91%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALAHIERVKRDTARVCM------------------VRENGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHA 144
            MG DGG++        R    V     + T  R  + +A   +C LSKQPLN P IV D LG LYNKDA++ Y+L ++    TQ    AHI+ +K D A + +                   ++   FVCP++ K +    +F   W CGCV A +   E A
Sbjct:    1 MGNDGGSI-------PRRSEMVKEKQKSETADRAAQLQAMFYYCALSKQPLNTP-IVGDALGRLYNKDAVLNYLLDKSSFGDTQ-SICAHIKSLK-DVATLTLKPNSTSKQATKTSILSFDTQQPAPFVCPISMKEMNGHTQFEFIWTCGCVFAAMARKEMA 152          
BLAST of Ggra5709.t1 vs. uniprot
Match: A0A5J4YLE4 (Protein RTF2-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLE4_PORPP)

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-10
Identity = 61/200 (30.50%), Postives = 86/200 (43.00%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATP-----AATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQH------------------DALAHIERVKRDTARVCMVRENGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDAD--REQ--------ASGLSDDAQICVAC 167
            MGGDGGT    + EH  +R  +L A       AA +Q    +R ++  C +S+ PL PP++V  G G LYNKDALI ++L RA +KR                     D   H ++   D         +G  VC ++ +      +F     CGCV +       +VH+D D  R Q        AS  + D   C AC
Sbjct:    1 MGGDGGTAPLPQREHAAMRRMILQACAESERDAAAEQTGDAERLAL--CAISRAPLVPPNVVC-GRGWLYNKDALIEWLLRRAAEKRQNSHSPTSAYFAHINGISSVMDVHLHFDKPAEDAGEPL----HGKVVCCLSGRQANATRQFIANRPCGCVMSA--GAMRSVHADLDTMRRQGRVVELGKASNSASDRLCCEAC 191          
BLAST of Ggra5709.t1 vs. uniprot
Match: A0A2N1JEB1 (Replication termination factor 2 n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1JEB1_9BASI)

HSP 1 Score: 66.2 bits (160), Expect = 2.480e-9
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQ-RASV-THCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQ--KRTQHDALAHIERVKRDTA------RVCMVRENGV---FVCPVTKKVVTEGGRFSVGWRCGCV 134
            MG DGGT+          R   L  T  A ++  K + R S+ T C LSKQ L+ P +V D LG LYNK+A++ Y+L R  +    T+H A  H++ +K   A       V    E+ +   F CP+T++V+    +F   W CGCV
Sbjct:    1 MGADGGTI---------ARRNDLVRTKKADEKGDKEELRHSLWTQCRLSKQSLDVP-VVADRLGQLYNKEAVLEYMLRRGTEDASNTEHQAARHLKGLKDVHAVQLTPNPVAKKEEDSLYYAFACPLTQRVMNGMHKFVFLWTCGCV 137          
BLAST of Ggra5709.t1 vs. uniprot
Match: replication termination factor 2 isoform X2 n=1 Tax=Pyrgilauda ruficollis TaxID=221976 RepID=UPI001B880E90 (replication termination factor 2 isoform X2 n=1 Tax=Pyrgilauda ruficollis TaxID=221976 RepID=UPI001B880E90)

HSP 1 Score: 65.1 bits (157), Expect = 5.620e-9
Identity = 60/186 (32.26%), Postives = 80/186 (43.01%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALAHIERVKR-------DTARVCMVREN-----------GVFVCPVTKKVVTEGGRFSVGWRCGCV---TATIESVEHAVHSDADREQASGLSDDAQICV 165
            MG DGGT+   RHE       V G        ++    A   +C LS++ L PP IV   LG LYNKDA+I Y+L ++  K T  ++ +HI+ +K        D    C  +E+             F+CPV    +    RF     CGCV    A  E      H DA   Q  GLS   Q+ V
Sbjct:    1 MGCDGGTIPK-RHE------LVKGPRKVEKVDKVAELVARWFYCALSQEKLRPP-IVACELGRLYNKDAIIEYLLDKSPDK-TPMESASHIKSIKNVTELQLVDNPAWCGDKESIKGDKYDDLQAARFICPVVGLEMNGRHRFCFLRNCGCVFSERALKEIKAEVCHKDAAHLQGRGLSSHVQLHV 177          
BLAST of Ggra5709.t1 vs. uniprot
Match: A0A061H2U7 (Replication termination factor 2 n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H2U7_9BASI)

HSP 1 Score: 65.5 bits (158), Expect = 8.120e-9
Identity = 58/172 (33.72%), Postives = 81/172 (47.09%), Query Frame = 0
Query:    1 MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQPLNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALA--HIERVK-------------RDTARVCMVRENGV--FVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDADREQAS 155
            MG DGG++   R E  R +A +  A P   +Q L       + C LS+QPL  P IV D LG LYNKDA++ Y+LHR  + +   D +A  HI  +K             R  +      E+    F+CP+T K +    RF     CGCV +  ES   A+ S+    + S
Sbjct:    1 MGNDGGSIAR-RDELVRTKAVLEKADPETIRQALW------SLCTLSRQPLRAP-IVSDALGRLYNKDAVVHYLLHRGDRPKGGIDDIAAGHIRGLKDVRELKLTKNPNFRPPSPTSTSSESNAAPFICPLTSKDMNGKYRFVYLQPCGCVMS--ESGLRAIASEVKSTRPS 162          
The following BLAST results are available for this feature:
BLAST of Ggra5709.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVH58.650e-7454.85Protein RTF2-like n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QHZ74.240e-3746.75Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2YAC06.880e-1732.52Replication termination factor 2 n=1 Tax=Galdieria... [more]
A0A7S3A4833.180e-1635.47Replication termination factor 2 n=1 Tax=Rhodosoru... [more]
A0A3G2S8J17.130e-1432.73Replication termination factor 2 n=2 Tax=Malassezi... [more]
A0A1Y1WA022.500e-1133.33Replication termination factor 2 n=1 Tax=Linderina... [more]
A0A5J4YLE41.700e-1030.50Protein RTF2-like n=1 Tax=Porphyridium purpureum T... [more]
A0A2N1JEB12.480e-935.37Replication termination factor 2 n=1 Tax=Malassezi... [more]
replication termination factor 2 isoform X2 n=1 Tax=Pyrgilauda ruficollis TaxID=221976 RepID=UPI001B880E905.620e-932.26replication termination factor 2 isoform X2 n=1 Ta... [more]
A0A061H2U78.120e-933.72Replication termination factor 2 n=2 Tax=Pseudozym... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF04641Rtf2coord: 1..222
e-value: 8.8E-26
score: 90.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..229
NoneNo IPR availablePANTHERPTHR12775:SF0REPLICATION TERMINATION FACTOR 2coord: 1..214
IPR006735Replication termination factor 2PANTHERPTHR12775PROTEIN C20ORF43 HOMOLOGcoord: 1..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1413862..1414551 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5709.t1Ggra5709.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1413862..1414551 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5709.t1 ID=Ggra5709.t1|Name=Ggra5709.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQP
LNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALAHIERVKRDTAR
VCMVRENGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDAD
REQASGLSDDAQICVACSQRGERIPLGLSVEERQIRLCALLDSRRRQRQQ
KKRKRAAVTDADSSPTKRSKQSELEPQPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006735Rtf2