Ggra5709.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5709.t1
Unique NameGgra5709.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1413862..1414551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709344.1
Preferred nameRTFDC1
PFAMsRtf2
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006274,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010453,GO:0019222,GO:0031494,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045595,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0060255,GO:0065007,GO:0071170,GO:0071171,GO:0071514,GO:0071515,GO:0071516,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:2000241
Evalue6.13e-17
EggNOG OGsKOG3113@1|root,KOG3113@2759|Eukaryota
Descriptionnuclear DNA replication termination
COG categoryN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5709Ggra5709Gracilaria gracilis GNS1m malegenetig00000842_pilon 1413862..1414551 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5709.t1.start1Ggra5709.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1413862..1413864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5709.t1.CDS1Ggra5709.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1413862..1414551 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5709.t1.exon1Ggra5709.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1413862..1414551 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5709.t1.stop1Ggra5709.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1414549..1414551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5709.t1Ggra5709.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1413862..1414551 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5709.t1 ID=Ggra5709.t1|Name=Ggra5709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQP
LNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALAHIERVKRDTAR
VCMVRENGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDAD
REQASGLSDDAQICVACSQRGERIPLGLSVEERQIRLCALLDSRRRQRQQ
KKRKRAAVTDADSSPTKRSKQSELEPQPA*
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spliced messenger RNA

>Ggra5709.t1 ID=Ggra5709.t1|Name=Ggra5709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000842_pilon:1413862..1414551+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGCGACGGCGGTACGCTCAACAACTCACGCCACGAGCACACGCG
CCTACGCGCGACAGTGCTGGGCGCCACGCCTGCCGCCACGCAGCAGCGTC
TCAAGCGGCAGCGCGCGTCGGTGACGCACTGCGAGCTCAGCAAACAGCCG
CTCAACCCGCCGCACATCGTCGTGGATGGACTGGGCTTGCTCTACAACAA
GGACGCGCTCATCGGCTACATCCTGCACCGCGCGCGGCAGAAGCGCACGC
AGCACGATGCGCTGGCGCATATCGAGCGCGTCAAGCGCGATACGGCGCGT
GTGTGTATGGTTCGAGAGAATGGTGTGTTCGTGTGCCCCGTAACTAAGAA
AGTGGTGACGGAGGGCGGTCGCTTCAGCGTTGGATGGCGATGCGGCTGTG
TCACTGCTACTATCGAGTCGGTTGAGCACGCTGTGCACAGTGATGCTGAT
CGTGAACAAGCCTCGGGTTTGAGTGATGATGCGCAGATTTGCGTGGCGTG
TTCACAGAGAGGTGAACGTATACCGCTGGGACTTTCCGTGGAAGAAAGAC
AGATTAGATTGTGCGCTTTACTTGACAGTCGACGACGGCAGCGTCAGCAA
AAGAAGAGGAAGCGCGCCGCCGTCACCGACGCCGATTCGTCTCCGACTAA
GCGCTCCAAACAGTCGGAGCTTGAGCCGCAACCTGCGTAG
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protein sequence of Ggra5709.t1

>Ggra5709.t1 ID=Ggra5709.t1|Name=Ggra5709.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MGGDGGTLNNSRHEHTRLRATVLGATPAATQQRLKRQRASVTHCELSKQP
LNPPHIVVDGLGLLYNKDALIGYILHRARQKRTQHDALAHIERVKRDTAR
VCMVRENGVFVCPVTKKVVTEGGRFSVGWRCGCVTATIESVEHAVHSDAD
REQASGLSDDAQICVACSQRGERIPLGLSVEERQIRLCALLDSRRRQRQQ
KKRKRAAVTDADSSPTKRSKQSELEPQPA*
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mRNA from alignment at tig00000842_pilon:1413862..1414551+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5709.t1 ID=Ggra5709.t1|Name=Ggra5709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000842_pilon:1413862..1414551+ (Gracilaria gracilis GNS1m male)
ATGGGCGGCGACGGCGGTACGCTCAACAACTCACGCCACGAGCACACGCG
CCTACGCGCGACAGTGCTGGGCGCCACGCCTGCCGCCACGCAGCAGCGTC
TCAAGCGGCAGCGCGCGTCGGTGACGCACTGCGAGCTCAGCAAACAGCCG
CTCAACCCGCCGCACATCGTCGTGGATGGACTGGGCTTGCTCTACAACAA
GGACGCGCTCATCGGCTACATCCTGCACCGCGCGCGGCAGAAGCGCACGC
AGCACGATGCGCTGGCGCATATCGAGCGCGTCAAGCGCGATACGGCGCGT
GTGTGTATGGTTCGAGAGAATGGTGTGTTCGTGTGCCCCGTAACTAAGAA
AGTGGTGACGGAGGGCGGTCGCTTCAGCGTTGGATGGCGATGCGGCTGTG
TCACTGCTACTATCGAGTCGGTTGAGCACGCTGTGCACAGTGATGCTGAT
CGTGAACAAGCCTCGGGTTTGAGTGATGATGCGCAGATTTGCGTGGCGTG
TTCACAGAGAGGTGAACGTATACCGCTGGGACTTTCCGTGGAAGAAAGAC
AGATTAGATTGTGCGCTTTACTTGACAGTCGACGACGGCAGCGTCAGCAA
AAGAAGAGGAAGCGCGCCGCCGTCACCGACGCCGATTCGTCTCCGACTAA
GCGCTCCAAACAGTCGGAGCTTGAGCCGCAACCTGCGTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:1413862..1414551+

>Ggra5709.t1 ID=Ggra5709.t1|Name=Ggra5709.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000842_pilon:1413862..1414551+ (Gracilaria gracilis GNS1m male)
ATGGGCGGCGACGGCGGTACGCTCAACAACTCACGCCACGAGCACACGCG
CCTACGCGCGACAGTGCTGGGCGCCACGCCTGCCGCCACGCAGCAGCGTC
TCAAGCGGCAGCGCGCGTCGGTGACGCACTGCGAGCTCAGCAAACAGCCG
CTCAACCCGCCGCACATCGTCGTGGATGGACTGGGCTTGCTCTACAACAA
GGACGCGCTCATCGGCTACATCCTGCACCGCGCGCGGCAGAAGCGCACGC
AGCACGATGCGCTGGCGCATATCGAGCGCGTCAAGCGCGATACGGCGCGT
GTGTGTATGGTTCGAGAGAATGGTGTGTTCGTGTGCCCCGTAACTAAGAA
AGTGGTGACGGAGGGCGGTCGCTTCAGCGTTGGATGGCGATGCGGCTGTG
TCACTGCTACTATCGAGTCGGTTGAGCACGCTGTGCACAGTGATGCTGAT
CGTGAACAAGCCTCGGGTTTGAGTGATGATGCGCAGATTTGCGTGGCGTG
TTCACAGAGAGGTGAACGTATACCGCTGGGACTTTCCGTGGAAGAAAGAC
AGATTAGATTGTGCGCTTTACTTGACAGTCGACGACGGCAGCGTCAGCAA
AAGAAGAGGAAGCGCGCCGCCGTCACCGACGCCGATTCGTCTCCGACTAA
GCGCTCCAAACAGTCGGAGCTTGAGCCGCAACCTGCGTAG
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