Ggra5641.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5641.t1
Unique NameGgra5641.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Homology
BLAST of Ggra5641.t1 vs. uniprot
Match: A0A2V3IL61 (Charged multivesicular body protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL61_9FLOR)

HSP 1 Score: 663 bits (1710), Expect = 1.450e-236
Identity = 355/456 (77.85%), Postives = 400/456 (87.72%), Query Frame = 0
Query:    1 MVTADLWSVTSLSSFKSRSAEEIDVLWSADLPPYRDANPGLWDAMIGFFEDAIVSSCSRPGELVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIVSADTLKPPSKDSTARSGYTLSSLKQTLGSYIWGAKKSEAPCLDDPIVPVAALKVAAARLSSYSEGPMASTEIHTVKSLASAVTERNTRDAEAIISYLVSKNEAVPLFTEPSPEHPEPVLGVKFGKQKVNPSDKGVLRTKAALEHMEQQSSHLENAIAKEIEAATKAARSGNKAEALTRLRKKKVLEAKLNGARSAATKLSDVLLAVDEAESNKEAVLALETGMESLKLVNENGVTAGRVDTVAADFKELMEDQTDVRLALGQLAQDSAADDAVLEEELELLVSGKKPSEIEL--NKQPKKSLDEKAEEELAQLLAQLPTPGAEAVPDPYKAAXXXXXXXXXAALKYQGDRVEANIPES 454
            MVT + WSVT+L+SFK+R+ EEIDVLWSADLP YRD NP LWDA++GFFEDAIVSSCSRPG+LVVTPRELLKQLKHNGREPSSGLR++RELFQKGDIVSADTL+PPSKDS+ R+GYTLS+LKQTLGSYIWGAKK+E+P LDDPIVPVAALK AAAR +S+SEGPMASTEIHTVK+LA+AVT RNTRDAEA+ISYLVSKNEAVPLFTEPSPEHPEPVLGVKFGK KVNPSD+GVLRTKAA EHMEQQS HLE A+A E EAAT AA++G K+EALTRLR+KKVLEAKL G RSAATKLSDVL+AVDEAESNKEAVLALETGM SLKLVNENGVTAGRVD VA+DFK+LME QTDVRLAL QLA+DSAADDAVLEEELE L++GK PS +++  +K PKK+L ++AEEELA+LLA LP+P  E VP PY+                   R+EANIP+S
Sbjct:    1 MVTGNAWSVTTLASFKTRNEEEIDVLWSADLPTYRDENPALWDAIVGFFEDAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRVIRELFQKGDIVSADTLRPPSKDSSNRAGYTLSALKQTLGSYIWGAKKTESPSLDDPIVPVAALKAAAARFASFSEGPMASTEIHTVKTLAAAVTGRNTRDAEAVISYLVSKNEAVPLFTEPSPEHPEPVLGVKFGKHKVNPSDQGVLRTKAAFEHMEQQSMHLEKAVAAEKEAATIAAKAGQKSEALTRLRRKKVLEAKLTGTRSAATKLSDVLMAVDEAESNKEAVLALETGMASLKLVNENGVTAGRVDNVASDFKDLMEGQTDVRLALEQLAKDSAADDAVLEEELEELITGK-PSALKVTPSKLPKKTLADEAEEELAELLAALPSPSNEPVPSPYQVPAAASSSGIQEPSAVDNRRLEANIPDS 455          
BLAST of Ggra5641.t1 vs. uniprot
Match: A0A1D2N595 (Charged multivesicular body protein 7 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2N595_ORCCI)

HSP 1 Score: 67.8 bits (164), Expect = 1.470e-8
Identity = 104/433 (24.02%), Postives = 187/433 (43.19%), Query Frame = 0
Query:    8 SVTSLSSFKSRSAEEIDVLWSADLPPYR--DANPGLWDAMIGFFEDAIVSSCSRPGELVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIVS----------ADTLKPPSKDSTARSGYTLSSLKQTLGSYIWGAKKSEAPC--------LDDPIVPVAALKVAAARLSSYSEGPMASTEIHTVKSLASAVTERNTRDAEAIISYLVSKNEAVPLFTEPSPEHPEPVLGVKFGKQ-KVNPSDKGVLRTKAALEHMEQQSSHLENAIAKEIEAATKAARSGNKAEALTRLRKKKVLEAKLNGARSAATKLSDVLLAVDEAESNKEAVLALETGMESLK-LVNENGVTAGRVDTVAADFKELMEDQTDVRLALGQLAQDSAADDAVLEEELELLV-----SGKKPSEIELNKQPKKSLDEKAEEELAQLLAQL 413
            S   + S +  SA++  V  SA   P+R  ++NP  +D  + F+  AI    S    +  T +EL K+ + +G+ P+    ++ +  + G +++          A++ K  S  S  R    + S   +  SY + A + E           L + +V   +L+     +S ++      +++  V SLA A       D E  + Y+ ++     L         E V     G Q K+   +KG        E +E Q + +     +  E A  A + G +  A   LR+KK+LE +++   S    L+ + + +++AES+   V A E G ++L  ++ +  + A RV     D +EL++  +DV  AL Q      +D   LEEEL+ ++       K P  +  + +P KS     EEE  ++L  L
Sbjct:    4 STVRVPSIEGISADKDRV--SALYAPFRSRESNPEHYDRKLKFWTKAIQEYGSTCKRISFTVKELQKEFRIDGKSPACLKEVIDQFCKDGIVLTEKDFLENLRAAESWKAWSTTSAWRVVRKVGSFVPSPISYFYRASEEEIRFVNVELLKELSESVVSNVSLQNKLMNVSLWN------SKVREVTSLADAT------DLEFFLGYMKARK----LIVIDKVGSEEVVFMSSTGSQPKITDVEKGKYDITRTKEILETQLNDITEKAQQAEERARAALKQGRRNTAKHELRRKKLLEQRMDKLLSMVDNLTVLGMQIEDAESDAVIVSAYEAGKKALAGVLEDKRMNADRVTEAMLDIQELLDQHSDVSAALSQPMDGQDSDILSLEEELDSILREDEEKSKLPPPVS-DPKPAKSQKNTDEEEALKMLEDL 417          
The following BLAST results are available for this feature:
BLAST of Ggra5641.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IL611.450e-23677.85Charged multivesicular body protein 7 n=1 Tax=Grac... [more]
A0A1D2N5951.470e-824.02Charged multivesicular body protein 7 n=1 Tax=Orch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 240..260
NoneNo IPR availableGENE3D1.10.287.1060coord: 229..305
e-value: 7.0E-7
score: 31.3
NoneNo IPR availablePANTHERPTHR22761:SF5CHARGED MULTIVESICULAR BODY PROTEIN 6coord: 225..405
IPR005024Snf7 familyPFAMPF03357Snf7coord: 238..398
e-value: 1.9E-13
score: 50.4
IPR005024Snf7 familyPANTHERPTHR22761CHARGED MULTIVESICULAR BODY PROTEINcoord: 225..405

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1225577..1227135 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5641.t1Ggra5641.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1225577..1227135 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5641.t1 ID=Ggra5641.t1|Name=Ggra5641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MVTADLWSVTSLSSFKSRSAEEIDVLWSADLPPYRDANPGLWDAMIGFFE
DAIVSSCSRPGELVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIVSA
DTLKPPSKDSTARSGYTLSSLKQTLGSYIWGAKKSEAPCLDDPIVPVAAL
KVAAARLSSYSEGPMASTEIHTVKSLASAVTERNTRDAEAIISYLVSKNE
AVPLFTEPSPEHPEPVLGVKFGKQKVNPSDKGVLRTKAALEHMEQQSSHL
ENAIAKEIEAATKAARSGNKAEALTRLRKKKVLEAKLNGARSAATKLSDV
LLAVDEAESNKEAVLALETGMESLKLVNENGVTAGRVDTVAADFKELMED
QTDVRLALGQLAQDSAADDAVLEEELELLVSGKKPSEIELNKQPKKSLDE
KAEEELAQLLAQLPTPGAEAVPDPYKAAAAAAGSSSAAALKYQGDRVEAN
IPES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam