Ggra5641.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5641.t1
Unique NameGgra5641.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1225577..1227135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000042469
Preferred nameCHMP7
PFAMsSnf7
Max annot lvl33208|Metazoa
KEGG koko:K15053
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005829,GO:0006810,GO:0006996,GO:0006997,GO:0006998,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007080,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010008,GO:0010256,GO:0010458,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0019058,GO:0019068,GO:0022402,GO:0022411,GO:0022607,GO:0031090,GO:0031410,GO:0031468,GO:0031967,GO:0031975,GO:0031982,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0034502,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045184,GO:0045324,GO:0046755,GO:0046907,GO:0048285,GO:0050000,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0061024,GO:0070727,GO:0070925,GO:0071168,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1903047,GO:1904896,GO:1904903
Evalue1.36e-08
EggNOG OGsKOG2911@1|root,KOG2911@2759|Eukaryota,38CY8@33154|Opisthokonta,3BJ1A@33208|Metazoa,3D1TX@33213|Bilateria,482U2@7711|Chordata,48X2Y@7742|Vertebrata,49W97@7898|Actinopterygii
DescriptionCharged multivesicular body protein
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5641Ggra5641Gracilaria gracilis GNS1m malegenetig00000842_pilon 1225577..1227135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5641.t1Ggra5641.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1225577..1227135 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5641.t1.stop1Ggra5641.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1225577..1225579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5641.t1.CDS1Ggra5641.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1225577..1226740 -
Ggra5641.t1.CDS2Ggra5641.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1226852..1226935 -
Ggra5641.t1.CDS3Ggra5641.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1227019..1227135 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5641.t1.exon1Ggra5641.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1225577..1226740 -
Ggra5641.t1.exon2Ggra5641.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1226852..1226935 -
Ggra5641.t1.exon3Ggra5641.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 1227019..1227135 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5641.t1.intron1Ggra5641.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1226741..1226851 -
Ggra5641.t1.intron2Ggra5641.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1226936..1227018 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5641.t1.start1Ggra5641.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1227133..1227135 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5641.t1 ID=Ggra5641.t1|Name=Ggra5641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MVTADLWSVTSLSSFKSRSAEEIDVLWSADLPPYRDANPGLWDAMIGFFE
DAIVSSCSRPGELVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIVSA
DTLKPPSKDSTARSGYTLSSLKQTLGSYIWGAKKSEAPCLDDPIVPVAAL
KVAAARLSSYSEGPMASTEIHTVKSLASAVTERNTRDAEAIISYLVSKNE
AVPLFTEPSPEHPEPVLGVKFGKQKVNPSDKGVLRTKAALEHMEQQSSHL
ENAIAKEIEAATKAARSGNKAEALTRLRKKKVLEAKLNGARSAATKLSDV
LLAVDEAESNKEAVLALETGMESLKLVNENGVTAGRVDTVAADFKELMED
QTDVRLALGQLAQDSAADDAVLEEELELLVSGKKPSEIELNKQPKKSLDE
KAEEELAQLLAQLPTPGAEAVPDPYKAAAAAAGSSSAAALKYQGDRVEAN
IPES*
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spliced messenger RNA

>Ggra5641.t1 ID=Ggra5641.t1|Name=Ggra5641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000842_pilon:1225577..1227135- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACGGCAGACTTATGGAGCGTGACTAGCCTGTCGTCCTTTAAGTC
AAGGAGCGCAGAGGAAATCGATGTTCTCTGGTCTGCAGATTTACCCCCCT
ACAGGGACGCTAACCCAGGTTTGTGGGACGCAATGATCGGTTTCTTTGAG
GATGCCATTGTTTCATCGTGTAGTCGTCCTGGGGAGCTTGTTGTCACTCC
AAGGGAGCTTTTGAAACAACTCAAGCACAACGGGCGAGAGCCTTCGTCGG
GTCTGCGCATTATGCGTGAACTTTTTCAGAAGGGGGATATTGTCAGTGCC
GACACCTTAAAACCTCCGTCCAAAGATTCAACAGCGAGATCAGGTTATAC
ATTGAGTTCCCTGAAGCAAACATTAGGCAGCTACATTTGGGGGGCGAAGA
AATCCGAAGCTCCTTGCCTTGATGACCCGATTGTGCCGGTTGCAGCTTTG
AAAGTAGCTGCTGCCCGTCTCTCTTCTTACTCCGAAGGTCCAATGGCTTC
GACTGAAATTCACACTGTGAAGAGTTTAGCATCTGCAGTAACAGAGCGGA
ATACGCGCGATGCAGAGGCCATAATATCATATCTCGTATCCAAGAACGAA
GCAGTTCCTTTGTTTACTGAGCCATCTCCAGAGCACCCTGAGCCCGTGCT
TGGTGTGAAGTTTGGAAAGCAAAAGGTTAATCCCAGCGATAAGGGTGTAC
TCAGAACGAAGGCTGCGCTTGAACACATGGAACAGCAATCATCGCACTTA
GAAAATGCAATTGCCAAAGAAATAGAAGCGGCAACAAAAGCTGCAAGGTC
TGGAAACAAGGCCGAAGCTCTAACGCGATTGCGAAAGAAGAAGGTGTTAG
AGGCGAAGCTCAATGGCGCTCGTTCTGCTGCTACGAAGCTTTCCGATGTT
TTGCTTGCAGTTGATGAGGCTGAGTCTAACAAGGAAGCAGTTCTAGCGCT
TGAAACGGGTATGGAGTCGCTCAAGCTTGTTAACGAGAATGGAGTTACTG
CGGGCAGAGTTGATACTGTTGCGGCGGACTTCAAGGAATTAATGGAAGAT
CAAACAGACGTTCGGCTCGCACTAGGACAACTTGCCCAGGATTCCGCAGC
AGATGATGCCGTTCTAGAAGAGGAATTGGAACTGCTTGTTTCAGGGAAAA
AGCCATCCGAGATAGAATTGAACAAACAGCCAAAGAAGTCGTTGGACGAA
AAAGCGGAGGAAGAATTGGCCCAACTTTTGGCACAGCTTCCCACTCCTGG
CGCGGAAGCAGTTCCAGACCCATATAAAGCAGCAGCGGCAGCCGCGGGGA
GTAGTTCTGCTGCCGCATTGAAGTATCAAGGCGATCGCGTCGAAGCTAAC
ATCCCCGAATCGTAA
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protein sequence of Ggra5641.t1

>Ggra5641.t1 ID=Ggra5641.t1|Name=Ggra5641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MVTADLWSVTSLSSFKSRSAEEIDVLWSADLPPYRDANPGLWDAMIGFFE
DAIVSSCSRPGELVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIVSA
DTLKPPSKDSTARSGYTLSSLKQTLGSYIWGAKKSEAPCLDDPIVPVAAL
KVAAARLSSYSEGPMASTEIHTVKSLASAVTERNTRDAEAIISYLVSKNE
AVPLFTEPSPEHPEPVLGVKFGKQKVNPSDKGVLRTKAALEHMEQQSSHL
ENAIAKEIEAATKAARSGNKAEALTRLRKKKVLEAKLNGARSAATKLSDV
LLAVDEAESNKEAVLALETGMESLKLVNENGVTAGRVDTVAADFKELMED
QTDVRLALGQLAQDSAADDAVLEEELELLVSGKKPSEIELNKQPKKSLDE
KAEEELAQLLAQLPTPGAEAVPDPYKAAAAAAGSSSAAALKYQGDRVEAN
IPES*
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mRNA from alignment at tig00000842_pilon:1225577..1227135-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5641.t1 ID=Ggra5641.t1|Name=Ggra5641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1559bp|location=Sequence derived from alignment at tig00000842_pilon:1225577..1227135- (Gracilaria gracilis GNS1m male)
ATGGTTACGGCAGACTTATGGAGCGTGACTAGCCTGTCGTCCTTTAAGTC
AAGGAGCGCAGAGGAAATCGATGTTCTCTGGTCTGCAGATTTACCCCCCT
ACAGGGACGCTAACCCAGTACGTTTGAAGTGAAGCACACGAGCTTCATTG
GATTTTCATCATTGTTTACTGACTCGAGTTCACTACCAACAACATTACAG
GGTTTGTGGGACGCAATGATCGGTTTCTTTGAGGATGCCATTGTTTCATC
GTGTAGTCGTCCTGGGGAGCTTGTTGTCACTCCAGTACGTAAGCCAAATA
TGATCTTGTCGGCCATGATGGATAGAGACCCATGCACCCCAACTAACAGC
TTGACTGATTCTGAATTCTATGTTGTACCCTTTCTCTTATAACAGAGGGA
GCTTTTGAAACAACTCAAGCACAACGGGCGAGAGCCTTCGTCGGGTCTGC
GCATTATGCGTGAACTTTTTCAGAAGGGGGATATTGTCAGTGCCGACACC
TTAAAACCTCCGTCCAAAGATTCAACAGCGAGATCAGGTTATACATTGAG
TTCCCTGAAGCAAACATTAGGCAGCTACATTTGGGGGGCGAAGAAATCCG
AAGCTCCTTGCCTTGATGACCCGATTGTGCCGGTTGCAGCTTTGAAAGTA
GCTGCTGCCCGTCTCTCTTCTTACTCCGAAGGTCCAATGGCTTCGACTGA
AATTCACACTGTGAAGAGTTTAGCATCTGCAGTAACAGAGCGGAATACGC
GCGATGCAGAGGCCATAATATCATATCTCGTATCCAAGAACGAAGCAGTT
CCTTTGTTTACTGAGCCATCTCCAGAGCACCCTGAGCCCGTGCTTGGTGT
GAAGTTTGGAAAGCAAAAGGTTAATCCCAGCGATAAGGGTGTACTCAGAA
CGAAGGCTGCGCTTGAACACATGGAACAGCAATCATCGCACTTAGAAAAT
GCAATTGCCAAAGAAATAGAAGCGGCAACAAAAGCTGCAAGGTCTGGAAA
CAAGGCCGAAGCTCTAACGCGATTGCGAAAGAAGAAGGTGTTAGAGGCGA
AGCTCAATGGCGCTCGTTCTGCTGCTACGAAGCTTTCCGATGTTTTGCTT
GCAGTTGATGAGGCTGAGTCTAACAAGGAAGCAGTTCTAGCGCTTGAAAC
GGGTATGGAGTCGCTCAAGCTTGTTAACGAGAATGGAGTTACTGCGGGCA
GAGTTGATACTGTTGCGGCGGACTTCAAGGAATTAATGGAAGATCAAACA
GACGTTCGGCTCGCACTAGGACAACTTGCCCAGGATTCCGCAGCAGATGA
TGCCGTTCTAGAAGAGGAATTGGAACTGCTTGTTTCAGGGAAAAAGCCAT
CCGAGATAGAATTGAACAAACAGCCAAAGAAGTCGTTGGACGAAAAAGCG
GAGGAAGAATTGGCCCAACTTTTGGCACAGCTTCCCACTCCTGGCGCGGA
AGCAGTTCCAGACCCATATAAAGCAGCAGCGGCAGCCGCGGGGAGTAGTT
CTGCTGCCGCATTGAAGTATCAAGGCGATCGCGTCGAAGCTAACATCCCC
GAATCGTAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1225577..1227135-

>Ggra5641.t1 ID=Ggra5641.t1|Name=Ggra5641.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000842_pilon:1225577..1227135- (Gracilaria gracilis GNS1m male)
ATGGTTACGGCAGACTTATGGAGCGTGACTAGCCTGTCGTCCTTTAAGTC
AAGGAGCGCAGAGGAAATCGATGTTCTCTGGTCTGCAGATTTACCCCCCT
ACAGGGACGCTAACCCAGGTTTGTGGGACGCAATGATCGGTTTCTTTGAG
GATGCCATTGTTTCATCGTGTAGTCGTCCTGGGGAGCTTGTTGTCACTCC
AAGGGAGCTTTTGAAACAACTCAAGCACAACGGGCGAGAGCCTTCGTCGG
GTCTGCGCATTATGCGTGAACTTTTTCAGAAGGGGGATATTGTCAGTGCC
GACACCTTAAAACCTCCGTCCAAAGATTCAACAGCGAGATCAGGTTATAC
ATTGAGTTCCCTGAAGCAAACATTAGGCAGCTACATTTGGGGGGCGAAGA
AATCCGAAGCTCCTTGCCTTGATGACCCGATTGTGCCGGTTGCAGCTTTG
AAAGTAGCTGCTGCCCGTCTCTCTTCTTACTCCGAAGGTCCAATGGCTTC
GACTGAAATTCACACTGTGAAGAGTTTAGCATCTGCAGTAACAGAGCGGA
ATACGCGCGATGCAGAGGCCATAATATCATATCTCGTATCCAAGAACGAA
GCAGTTCCTTTGTTTACTGAGCCATCTCCAGAGCACCCTGAGCCCGTGCT
TGGTGTGAAGTTTGGAAAGCAAAAGGTTAATCCCAGCGATAAGGGTGTAC
TCAGAACGAAGGCTGCGCTTGAACACATGGAACAGCAATCATCGCACTTA
GAAAATGCAATTGCCAAAGAAATAGAAGCGGCAACAAAAGCTGCAAGGTC
TGGAAACAAGGCCGAAGCTCTAACGCGATTGCGAAAGAAGAAGGTGTTAG
AGGCGAAGCTCAATGGCGCTCGTTCTGCTGCTACGAAGCTTTCCGATGTT
TTGCTTGCAGTTGATGAGGCTGAGTCTAACAAGGAAGCAGTTCTAGCGCT
TGAAACGGGTATGGAGTCGCTCAAGCTTGTTAACGAGAATGGAGTTACTG
CGGGCAGAGTTGATACTGTTGCGGCGGACTTCAAGGAATTAATGGAAGAT
CAAACAGACGTTCGGCTCGCACTAGGACAACTTGCCCAGGATTCCGCAGC
AGATGATGCCGTTCTAGAAGAGGAATTGGAACTGCTTGTTTCAGGGAAAA
AGCCATCCGAGATAGAATTGAACAAACAGCCAAAGAAGTCGTTGGACGAA
AAAGCGGAGGAAGAATTGGCCCAACTTTTGGCACAGCTTCCCACTCCTGG
CGCGGAAGCAGTTCCAGACCCATATAAAGCAGCAGCGGCAGCCGCGGGGA
GTAGTTCTGCTGCCGCATTGAAGTATCAAGGCGATCGCGTCGAAGCTAAC
ATCCCCGAATCGTAA
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