Ggra5678.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5678.t1
Unique NameGgra5678.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1330983..1331384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1337936.IJ00_17240
PFAMsThioredoxin
Max annot lvl1117|Cyanobacteria
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Evalue3.37e-05
EggNOG OGsCOG3118@1|root,COG3118@2|Bacteria,1G7YT@1117|Cyanobacteria,1HPCS@1161|Nostocales
DescriptionBelongs to the thioredoxin family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5678Ggra5678Gracilaria gracilis GNS1m malegenetig00000842_pilon 1330983..1331384 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5678.t1.start1Ggra5678.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1330983..1330985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5678.t1.CDS1Ggra5678.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1330983..1331384 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5678.t1.exon1Ggra5678.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1330983..1331384 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5678.t1.stop1Ggra5678.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1331382..1331384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5678.t1Ggra5678.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1330983..1331384 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5678.t1 ID=Ggra5678.t1|Name=Ggra5678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=134bp
MTVHRVRNPNDFAAALPLPDSNPLVVFSFITGGCRACKYASHAFARLAND
FGPNVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLD
EFVGPRTVSKVRERVAQYLEGGVDMNDYMFEED*
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spliced messenger RNA

>Ggra5678.t1 ID=Ggra5678.t1|Name=Ggra5678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000842_pilon:1330983..1331384+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTTCACCGTGTGAGGAATCCCAACGACTTTGCAGCAGCGTTGCC
TCTGCCAGACTCGAACCCACTGGTTGTTTTCTCCTTCATTACAGGCGGTT
GCCGCGCTTGCAAGTACGCTAGTCATGCCTTTGCTCGTCTGGCAAATGAT
TTTGGTCCAAACGTCCGTTTTTGCGAGATGGACGTCTCAGAACGACAGAA
TCAGCTGCTTGGTAAGCGGTTAGGTATCGACGCCGTACCTGCATTCCAGT
TCTACACGTTCAAGAAGGATGGTCCTCAGAATGGTGTCGGTGTGCTTGAT
GAGTTCGTCGGCCCGAGGACTGTCAGCAAAGTGCGCGAGCGTGTTGCTCA
ATATCTGGAAGGTGGAGTCGATATGAATGATTACATGTTTGAAGAAGATT
GA
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protein sequence of Ggra5678.t1

>Ggra5678.t1 ID=Ggra5678.t1|Name=Ggra5678.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=134bp
MTVHRVRNPNDFAAALPLPDSNPLVVFSFITGGCRACKYASHAFARLAND
FGPNVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLD
EFVGPRTVSKVRERVAQYLEGGVDMNDYMFEED*
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mRNA from alignment at tig00000842_pilon:1330983..1331384+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5678.t1 ID=Ggra5678.t1|Name=Ggra5678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000842_pilon:1330983..1331384+ (Gracilaria gracilis GNS1m male)
ATGACCGTTCACCGTGTGAGGAATCCCAACGACTTTGCAGCAGCGTTGCC
TCTGCCAGACTCGAACCCACTGGTTGTTTTCTCCTTCATTACAGGCGGTT
GCCGCGCTTGCAAGTACGCTAGTCATGCCTTTGCTCGTCTGGCAAATGAT
TTTGGTCCAAACGTCCGTTTTTGCGAGATGGACGTCTCAGAACGACAGAA
TCAGCTGCTTGGTAAGCGGTTAGGTATCGACGCCGTACCTGCATTCCAGT
TCTACACGTTCAAGAAGGATGGTCCTCAGAATGGTGTCGGTGTGCTTGAT
GAGTTCGTCGGCCCGAGGACTGTCAGCAAAGTGCGCGAGCGTGTTGCTCA
ATATCTGGAAGGTGGAGTCGATATGAATGATTACATGTTTGAAGAAGATT
GA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1330983..1331384+

>Ggra5678.t1 ID=Ggra5678.t1|Name=Ggra5678.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00000842_pilon:1330983..1331384+ (Gracilaria gracilis GNS1m male)
ATGACCGTTCACCGTGTGAGGAATCCCAACGACTTTGCAGCAGCGTTGCC
TCTGCCAGACTCGAACCCACTGGTTGTTTTCTCCTTCATTACAGGCGGTT
GCCGCGCTTGCAAGTACGCTAGTCATGCCTTTGCTCGTCTGGCAAATGAT
TTTGGTCCAAACGTCCGTTTTTGCGAGATGGACGTCTCAGAACGACAGAA
TCAGCTGCTTGGTAAGCGGTTAGGTATCGACGCCGTACCTGCATTCCAGT
TCTACACGTTCAAGAAGGATGGTCCTCAGAATGGTGTCGGTGTGCTTGAT
GAGTTCGTCGGCCCGAGGACTGTCAGCAAAGTGCGCGAGCGTGTTGCTCA
ATATCTGGAAGGTGGAGTCGATATGAATGATTACATGTTTGAAGAAGATT
GA
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