Ggra5678.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5678.t1
Unique NameGgra5678.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length134
Homology
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BLAST of Ggra5678.t1 vs. uniprot
Match: A0A2V3IXF2 (Thioredoxin domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXF2_9FLOR)

HSP 1 Score: 209 bits (533), Expect = 2.600e-67
Identity = 100/133 (75.19%), Postives = 114/133 (85.71%), Query Frame = 0 
Query:    1 MTVHRVRNPNDFAAALPLPDSNPLVVFSFITGGCRACKYASHAFARLANDFGPNVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLDEFVGPRTVSKVRERVAQYLEGGVDMNDYMFEED 133
            MTVHRVRN  DFAAALPLP+S PLVVFSFIT GCRACKYASHA+ RL+NDFG  VRF EMDVSER NQLLGKRLG++AVPAFQFY FKK    +GVGVL+EFVGPRTV +VRER+A YL+ G++M++Y FE D
Sbjct:   37 MTVHRVRNARDFAAALPLPESTPLVVFSFITAGCRACKYASHAYDRLSNDFGARVRFFEMDVSERDNQLLGKRLGVEAVPAFQFYAFKKSPQHSGVGVLEEFVGPRTVPRVRERLAHYLDDGLNMDEYDFETD 169
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BLAST of Ggra5678.t1 vs. uniprot
Match: A0A5J4YM17 (Thioredoxin-like 2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YM17_PORPP)

HSP 1 Score: 56.2 bits (134), Expect = 6.170e-7
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 0 
Query:    6 VRNPNDFAAALPLPDSNPLVVFSFITGGCRACKYASHAFARLANDFGPNVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLDEF-VGPRTVSK-VRERVAQYLEGGVDMNDY 128
            V  P +F AA+    +  LVV  F    C++C      F R A+++ P   FCE+D+ E  N+ + +R+G+ A+P FQFY    DG   G G  + F  GP+  +  V  ++ +Y  G  D+ ++
Sbjct:   87 VAGPAEFLAAMEC-SAKQLVVVKFYAPWCKSCAEIEPKFRRYAHEY-PEFLFCEVDLQE--NKDMCRRVGVSALPFFQFY----DG---GAGKCESFSAGPKRFNDLVVAKLQEYSTGKCDLANH 200
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BLAST of Ggra5678.t1 vs. uniprot
Match: A0A7S0XIJ4 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XIJ4_9RHOD)

HSP 1 Score: 54.3 bits (129), Expect = 3.030e-6
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 0 
Query:    3 VHRVRNPNDFAAALPLPDSNPLVVFSFITGGCRACKYASHAFARLANDFG-PNVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLDEFV--GPRTVSKVRERVAQYLEGGVDMNDYMF 130
            +   R  ND  A +   D   +V+F      CR+CK       + AND    + R   +DVSE  N+ LG++LGID +P FQFY    D P    G+LDEF   G +   ++  R+ ++     D ++Y F
Sbjct:   85 IKSARELND--AIMAAHDHTAVVMFH--ASHCRSCKAMRPRVQKFANDPKYASARIYAIDVSE--NEDLGRQLGIDRLPTFQFYVNHGDQP----GLLDEFSCGGFQCARRLAARLDRFGTSEFDASEYEF 205
The following BLAST results are available for this feature:
BLAST of Ggra5678.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IXF22.600e-6775.19Thioredoxin domain-containing protein n=1 Tax=Grac... [more]
A0A5J4YM176.170e-732.00Thioredoxin-like 2, chloroplastic n=1 Tax=Porphyri... [more]
A0A7S0XIJ43.030e-632.82Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..125
e-value: 1.2E-13
score: 52.8
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..34
score: 6.0
NoneNo IPR availableCDDcd02947TRX_familycoord: 11..116
e-value: 8.48125E-12
score: 55.2569
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 19..89
e-value: 3.0E-7
score: 30.4
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 1..120
score: 9.477171
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 3..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1330983..1331384 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5678.t1Ggra5678.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1330983..1331384 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5678.t1 ID=Ggra5678.t1|Name=Ggra5678.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=134bp
MTVHRVRNPNDFAAALPLPDSNPLVVFSFITGGCRACKYASHAFARLAND
FGPNVRFCEMDVSERQNQLLGKRLGIDAVPAFQFYTFKKDGPQNGVGVLD
EFVGPRTVSKVRERVAQYLEGGVDMNDYMFEED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR036249Thioredoxin-like_sf