Ggra5595.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5595.t1
Unique NameGgra5595.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Homology
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A2V3IFY4 (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFY4_9FLOR)

HSP 1 Score: 291 bits (746), Expect = 1.270e-97
Identity = 128/211 (60.66%), Postives = 160/211 (75.83%), Query Frame = 0
Query:    1 MDLMDIDTERHCTIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPILACCEPVSPVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVEIPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            MD M++DT+   T++ +PD ++R IF +L P++LE +RQVC RWNE A+HH LWR+HCF HSPSLRTER AWP+LACC+PV+P+ WRYV+RTLQNRPR    L K+ RFLCN I HLIKG Y ++P  L+V+RRFDI++LP FL   CTYFY+EPL E DK  Y+DFV YL  R RAGL+     R MLIPPC  V Q VNY+G+RLI A+
Sbjct:    1 MDAMEVDTDNVVTMNDIPDRLVRHIFSFLEPQQLEAARQVCQRWNECASHHLLWRKHCFTHSPSLRTERSAWPLLACCKPVAPIQWRYVYRTLQNRPRCTVTLQKAERFLCNMIAHLIKGPYAQLPSTLVVQRRFDIMYLPFFLNHNCTYFYLEPLTEADKGAYDDFVNYLIQRDRAGLVMTKMNRFMLIPPCRDVGQRVNYTGDRLIAAV 211          
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A2V3IDC9 (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDC9_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 3.690e-45
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = 0
Query:   16 SLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPILACCEPVSPVP-WRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVE---IPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            S+PD   + IF +L   +L  +R+VCTRWN   +   LWR+ C  +  +L ++   W ++  C P+     WR ++  ++N P+W   L K+GRF+CN + H I G+ V    +P +L+V+RRF+IVHL  F+       Y EP  E D+  +++F++YL  R RAGL    ++R + IPPC+Y R  +NY G  L+G +
Sbjct:  197 SIPDETAKHIFSFLGGRDLARAREVCTRWNRFGSEEGLWRKLCLANWSALESDPAVWSLIDRCIPLGSYNCWRSIYPKIENIPKWTCRLQKTGRFVCNLVAHQISGTPVGDVGLPKVLVVERRFNIVHLQTFVLHDAAVLYFEPESEADRHGFDEFIEYLNKRTRAGLALEDQRRFIFIPPCDYTRTQINYHGRSLLGVV 396          
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A7S0G2G1 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2G1_9RHOD)

HSP 1 Score: 160 bits (404), Expect = 4.120e-45
Identity = 74/203 (36.45%), Postives = 115/203 (56.65%), Query Frame = 0
Query:   13 TIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPIL-ACCEPVSPVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVEIPGL---LLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            +I+ LP+ +++ IF +L   +L   R VC +WNE +     WR+ C +  PSL T++  W ++    E   P  WR ++  + NRPRW   L K+G+F+CN   H I+G  +   GL   L+V+RRF ++HL  F+    T  Y EP+   D+  +E F+ YL  R RAGL     +R + +PPC+Y ++ VNY G  L+G +
Sbjct:   58 SIEGLPNELVKMIFSFLDGPDLANVRLVCKQWNEFSCEDRFWRELCIRLWPSLDTDKSTWRLIDEAVEATDPSKWRKIYPKVANRPRWKCRLQKTGKFICNLNAHQIRGPGLGDQGLPYTLVVERRFSLLHLNQFVLPEATMLYFEPVTPEDRPGFEQFIDYLVRRSRAGLALEGDRRFIFVPPCQYSQEKVNYDGHSLLGVV 260          
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A7S2ZYW3 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYW3_9RHOD)

HSP 1 Score: 158 bits (400), Expect = 3.140e-43
Identity = 74/203 (36.45%), Postives = 114/203 (56.16%), Query Frame = 0
Query:   13 TIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPIL-ACCEPVSPVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVEIPGL---LLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            +I+ LP+ +++ IF +L   +L   R VC +WNE +     WR+ C +  PSL T++  W ++    E   P  WR ++  + NRPRW   L K+G+F+CN   H I+G  +   GL   L+V+RRF ++HL  F+    T  Y EP+   D+  +E F+ YL  R RAGL     +R + +PPC Y ++ VNY G  L+G +
Sbjct:  180 SIEGLPNELVKLIFSFLDGPDLANVRLVCKQWNEFSCEDRFWRELCIRLWPSLDTDKSTWRLIDEAVEATDPSKWRKIYPKVANRPRWKCRLQKTGKFICNLNAHQIRGPGLGDQGLPYTLVVERRFSLLHLNQFVLPEATMLYFEPVTPEDRPGFEQFIDYLVKRSRAGLALEGDRRFIFVPPCHYSQEKVNYDGHSLLGVV 382          
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A2V3IDD9 (F-box domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDD9_9FLOR)

HSP 1 Score: 155 bits (392), Expect = 2.840e-42
Identity = 76/207 (36.71%), Postives = 116/207 (56.04%), Query Frame = 0
Query:    9 ERHCTIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPILACCEPVS-PVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVE---IPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            ER      LPD + + IF +L    L I R+VC++WN  A+    W+    +   SL T+  AW ++     V+ P  WR ++      P+W   L K+GRF+CN + H I+G+ +    +P +L+V+RRF++ HL  F+ +  +  Y EP  E+D+  YEDF++YL  R RAGL    ++R + IPPCEY R  V Y G  L+G +
Sbjct:  155 ERQQLFGLLPDEITKHIFSFLDGPNLAICREVCSKWNAFASCEKQWKTLVTRKWRSLETDVDAWKLIDSSVDVNAPNRWRMIYPKASAIPKWRCRLQKTGRFMCNLVAHQIRGAPIGDAGLPDVLVVERRFNLQHLQAFVMSEASVLYFEPESEQDRGGYEDFIEYLIKRTRAGLALDDQQRFIFIPPCEYTRTHVKYEGRSLLGVV 361          
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A2V3IY22 (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY22_9FLOR)

HSP 1 Score: 149 bits (375), Expect = 1.960e-41
Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = 0
Query:   15 DSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPILACCEPVSPVP-WRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVE---IPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIG 209
            D L D ++R +F++L   EL  +R+VC+RWN  A   HLW++ C     +L T+++ W ++     +     WR ++  ++N P+W   L K+  F+CN + H + G+ V    +P +L+V+RRF IVHL  F        Y EP  E D+  +++F++YL+ R RAGL    ++R +L PPC+Y R  + Y G  L+G
Sbjct:    4 DHLYDKLVRHVFQFLGARELARAREVCSRWNALAGGEHLWKKLCVADWAALETDQELWQLIDRAISLDDANCWRNMYPKIENIPKWTCCLQKTRSFVCNLVAHQVSGTPVGDVGLPKVLVVERRFSIVHLQTFALHDAAVLYFEPESEADRHGFDEFIEYLSQRARAGLALEAERRFVLFPPCDYGRIQLGYHGRSLLG 202          
BLAST of Ggra5595.t1 vs. uniprot
Match: S0F3M8 (F-box domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3M8_CHOCR)

HSP 1 Score: 152 bits (384), Expect = 4.850e-40
Identity = 71/198 (35.86%), Postives = 113/198 (57.07%), Query Frame = 0
Query:   17 LPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPIL-ACCEPVSPVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYV--EIPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            +PD + + IF +L  + L  +R+VC RWN+ A    LW+  C K   +L +++  W ++    +P  P  WR +F  + N  +W   L K+GRF+CN + H I G+ +   +P +L+V+RRF+I+HL  F+    +  Y EP    D+  ++DF+ YL  R RAGL    + R + IPPC+Y R  V Y G+ L+G +
Sbjct:  293 IPDELAKHIFGFLEGKHLARAREVCHRWNDFACEEPLWKSLCLKKWKALESDKDLWKLVDKDVDPEGPNCWRKIFPKVSNTSQWRCRLQKTGRFICNLVAHQISGTPLLGGLPEVLVVERRFNILHLQTFVRPDASILYFEPELASDRTGFDDFIDYLNKRTRAGLALEGQLRFIFIPPCDYTRTQVEYPGQSLLGVV 490          
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A5J4YZ77 (Flowering time control protein FPA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ77_PORPP)

HSP 1 Score: 152 bits (384), Expect = 5.840e-39
Identity = 73/201 (36.32%), Postives = 112/201 (55.72%), Query Frame = 0
Query:   15 DSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPIL-ACCEPVSPVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVE---IPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            ++LP  + + I  +L    +  +RQVC  W E A    +W+Q C K   SL  +  AWP+         P  WR ++ +L     W   L K+GRF+C+ I H + GS +    +P  L+V+RRF+I+HL  F+       Y EP  E D++ +EDF++YLT R RAGL    ++R + IPPCEY + ++NY G+ L+G +
Sbjct:  634 NALPHELTKHILSFLDGRNMARARQVCQTWREIACDEEIWKQLCIKEWRSLAADPDAWPLANPLVSHEDPNRWRKIYPSLVTGKSWRCRLQKTGRFICHMIAHQVNGSSLGERGLPDTLVVERRFNILHLQTFVLPDAAVLYFEPESEADRSGFEDFIEYLTRRTRAGLALDEQRRFIFIPPCEYSKDTLNYRGKSLLGVV 834          
BLAST of Ggra5595.t1 vs. uniprot
Match: A0A7S0ZH25 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZH25_9RHOD)

HSP 1 Score: 146 bits (369), Expect = 2.090e-38
Identity = 80/225 (35.56%), Postives = 115/225 (51.11%), Query Frame = 0
Query:    6 IDTERHCTIDS--LPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPIL--------------ACCEPVSPVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVE---IPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            + +  H   DS  LP  V+  IF  L    L   RQV   W E A+ H LW+  C KH  +L+ +   WPI+                 E  +   W  ++  ++  P W   L K+GRF+CN I H I G  +    +P  L+V+RRF+I+HL  F+    +  Y EP  E D+  +E+F+QYLTNR RAGL    ++R + IPPCEY +  + YSG  L+G +
Sbjct:  190 LSSHSHNAYDSNALPHEVLDLIFSKLDGNSLATCRQVSKSWKEFASCHKLWKSLCLKHWRALQYDSNLWPIIYRSDTNSSNENSINLLKESYNHERWIRIYPLIKGFPSWKIRLQKTGRFICNLIAHQISGRSLTSYGLPETLVVERRFNILHLENFILPEASVLYYEPESESDRNGFEEFIQYLTNRTRAGLALDDQRRFIFIPPCEYSKTHLGYSGNALLGVI 414          
BLAST of Ggra5595.t1 vs. uniprot
Match: M1VHB8 (F-box domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VHB8_CYAM1)

HSP 1 Score: 146 bits (368), Expect = 3.370e-38
Identity = 74/218 (33.94%), Postives = 122/218 (55.96%), Query Frame = 0
Query:   10 RHCTIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAHHHLWRQHCFKHSPSLRTERKAWPIL-----------ACCEPV--SPVPWRYVFRTLQNRPRWVAPLYKSGRFLCNTIVHLIKGSYVE---IPGLLLVKRRFDIVHLPLFLGATCTYFYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSVNYSGERLIGAL 211
            R  TI  LPD  +R+IF Y+   +L   R VC +W + A+  +LWR+ C ++  +L T+   W +L           +  EP+      WR+++  ++  P+W   L K+GRF+C  + H I G   +   IP +++V+RRF++ HL  F+      FY EP  E D+  Y++F++YL  R RAGL    ++R++ IPPC Y +  ++Y+GE L+G +
Sbjct:  205 RPTTISDLPDDTLRRIFTYMNGPQLGRVRGVCKKWCKFASDENLWRKLCLENWRALETDAYLWRLLLDYHLSQEAQASNREPLVSEDSRWRFMYPIVRYVPKWTCRLQKTGRFVCRLVAHQIGGPLTDEESIPPVVVVERRFNLNHLNEFVLPDAAVFYFEPEREEDRDGYQNFIEYLIQRHRAGLALDEERRIIFIPPCAYSQNVLHYNGEALLGVV 422          
The following BLAST results are available for this feature:
BLAST of Ggra5595.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2V3IFY41.270e-9760.66F-box domain-containing protein n=1 Tax=Gracilario... [more]
A0A2V3IDC93.690e-4537.00F-box domain-containing protein n=1 Tax=Gracilario... [more]
A0A7S0G2G14.120e-4536.45Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZYW33.140e-4336.45Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IDD92.840e-4236.71F-box domain-containing protein n=2 Tax=Gracilario... [more]
A0A2V3IY221.960e-4135.18F-box domain-containing protein n=1 Tax=Gracilario... [more]
S0F3M84.850e-4035.86F-box domain-containing protein n=1 Tax=Chondrus c... [more]
A0A5J4YZ775.840e-3936.32Flowering time control protein FPA n=1 Tax=Porphyr... [more]
A0A7S0ZH252.090e-3835.56Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M1VHB83.370e-3833.94F-box domain-containing protein n=2 Tax=cellular o... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 17..57
e-value: 8.3E-4
score: 28.6
IPR001810F-box domainPFAMPF12937F-box-likecoord: 14..60
e-value: 2.0E-10
score: 40.4
IPR001810F-box domainPROSITEPS50181FBOXcoord: 11..57
score: 11.855471
IPR012921Spen paralogue and orthologue SPOC, C-terminalPFAMPF07744SPOCcoord: 147..200
e-value: 1.7E-6
score: 28.0
NoneNo IPR availableGENE3D1.20.1280.50coord: 6..100
e-value: 1.7E-11
score: 45.9
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 8..93
IPR016194SPOC-like, C-terminal domain superfamilySUPERFAMILY100939SPOC domain-likecoord: 116..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1064013..1064663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5595.t1Ggra5595.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1064013..1064663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5595.t1 ID=Ggra5595.t1|Name=Ggra5595.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MDLMDIDTERHCTIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAH
HHLWRQHCFKHSPSLRTERKAWPILACCEPVSPVPWRYVFRTLQNRPRWV
APLYKSGRFLCNTIVHLIKGSYVEIPGLLLVKRRFDIVHLPLFLGATCTY
FYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSV
NYSGERLIGALTAIGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR012921SPOC_C
IPR036047F-box-like_dom_sf
IPR016194SPOC-like_C_dom_sf