Ggra10189.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10189.t1
Unique NameGgra10189.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length208
Homology
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A2V3IH75 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH75_9FLOR)

HSP 1 Score: 144 bits (363), Expect = 1.060e-39
Identity = 89/207 (43.00%), Postives = 116/207 (56.04%), Query Frame = 0
Query:    4 LCDISLSKSA----PSPSPPRAAAAHAVVPVLGVSLLSLLAYGAVTLSLNRR-----------FELPLAYVLIILGYLLLPGVGVLLVRRQRCIARQRALLHKLQHQPDAPHASLPNRVSHALHMAVRHLSASSRAVLSRVNRCTTKSTWRA---DRHEQCAVCLAQLQPGCRARILPCQHAFHVPCADSWLVDAAHNSCPLCWRPV 192
            + D SLS  A    PS   P +    ++   + VS L+L+ Y  V +++N              EL L YVLIILGYLL+PGVGVLLVRRQRC+AR + +L       D  H S     + +  +  R   + + A+  ++ +CTTK  W A   D   QCA+CL+ LQPGC ARIL C+HAFH  CA  W+V A  NSCPLCW PV
Sbjct:    1 MADKSLSNGATTAPPSAYQPTSLTKDSIFATMCVSFLALILYTLVNMTVNSPAQRSSTLARSDVELVLGYVLIILGYLLVPGVGVLLVRRQRCMARNQFVLQLDSDVFDNRHFSALFGDALSCSLMRRFTPSDTSAICRQLEQCTTKQLWHAHPADHPAQCAICLSDLQPGCHARILACKHAFHAQCAHLWIVRARKNSCPLCWTPV 207          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A7C9E695 (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E695_OPUST)

HSP 1 Score: 65.1 bits (157), Expect = 1.160e-9
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 0
Query:  134 TKSTWRADRHEQCAVCLAQLQPGCRARILP-CQHAFHVPCADSWLVDAAHNSCPLCWRPV 192
            TK   RA     CAVCLA+ + G   RILP C HAFHVPC D+WL   +H +CPLC  PV
Sbjct:   39 TKENSRAVECTDCAVCLAEFEGGEELRILPKCNHAFHVPCIDTWL--KSHINCPLCRAPV 96          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A8C4VX92 (RING-type domain-containing protein n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4VX92_9SAUR)

HSP 1 Score: 62.8 bits (151), Expect = 4.530e-9
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  128 RVNRCTTKSTWRADRHEQCAVCLAQLQPGCRARILPCQHAFHVPCADSWLVDAAHN-SCPLCWRPVWQQQPD 198
            ++  CT K   R DR+E C +C+A+ + G + +ILPC HA+H  C D+WL     N +CP C + V  +  D
Sbjct:   56 KITLCTFK---RGDRYETCVICMAEYEEGDQLKILPCSHAYHCACIDTWLHTQPRNKTCPFCKQQVTAEAQD 124          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A7C9A6H6 (RING-type E3 ubiquitin transferase n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A6H6_OPUST)

HSP 1 Score: 65.1 bits (157), Expect = 6.080e-9
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 0
Query:  134 TKSTWRADRHEQCAVCLAQLQPGCRARILP-CQHAFHVPCADSWLVDAAHNSCPLCWRPV 192
            TK   RA     CAVCLA+ + G   RILP C HAFHVPC D+WL   +H +CPLC  PV
Sbjct:  170 TKENSRAVECTDCAVCLAEFEGGEELRILPKCNHAFHVPCIDTWL--KSHINCPLCRAPV 227          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A8C3SRZ8 (RING-type domain-containing protein n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3SRZ8_CHESE)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-8
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  128 RVNRCTTKSTWRADRHEQCAVCLAQLQPGCRARILPCQHAFHVPCADSWLVDAAHN-SCPLCWRPVWQQQPD 198
            ++  CT K   R DR+E C +C+A+ + G + +ILPC HA+H  C D+WL     N +CP C + V  +  D
Sbjct:   67 KITLCTFK---RGDRYETCVICMAEYEEGDQLKILPCSHAYHSACIDTWLHTQPRNKTCPFCKQQVTVEAQD 135          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A674I920 (RING-type domain-containing protein n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674I920_TERCA)

HSP 1 Score: 61.6 bits (148), Expect = 1.490e-8
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 0
Query:  128 RVNRCTTKSTWRADRHEQCAVCLAQLQPGCRARILPCQHAFHVPCADSWLVDAAHN-SCPLCWRPVWQQQPD 198
            ++  CT K   R D++E C +C+A+ + G + +ILPC HA+H  C D+WL     N +CP C + V  +  D
Sbjct:   64 KITLCTFK---RGDQYEMCVICIAEYEEGDQLKILPCSHAYHCACIDTWLHTQPRNKTCPFCKQQVTAEAQD 132          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A8B8LF72 (RING-type E3 ubiquitin transferase n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LF72_ABRPR)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-8
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0
Query:  143 HEQCAVCLAQLQPGCRARILP-CQHAFHVPCADSWLVDAAHNSCPLCWRPV 192
            H++C++CL QL+ G + R+LP C HAFH PC D+W  D  H +CP+C  P+
Sbjct:   89 HDECSICLGQLEDGDQVRLLPACNHAFHRPCIDAWFKD--HANCPICRSPI 137          
BLAST of Ggra10189.t1 vs. uniprot
Match: E3 ubiquitin-protein ligase RNF167-like n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014025A75 (E3 ubiquitin-protein ligase RNF167-like n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014025A75)

HSP 1 Score: 63.2 bits (152), Expect = 3.080e-8
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:  139 RADRHEQCAVCLAQLQPGCRARILPCQHAFHVPCADSWLVDAAHNSCPLCWRPVWQQQPDCNS 201
            + D ++ CA+CL + + G R R+LPC HA+H  C D+WL    H +CP+C + V +   D +S
Sbjct:  229 KGDAYDVCAICLDEYEEGDRLRVLPCSHAYHCKCVDTWLTQT-HKTCPVCKQRVLRSAADSDS 290          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A3Q0FXN9 (RING-type E3 ubiquitin transferase n=5 Tax=Crocodylia TaxID=1294634 RepID=A0A3Q0FXN9_ALLSI)

HSP 1 Score: 63.2 bits (152), Expect = 3.120e-8
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 0
Query:  128 RVNRCTTKSTWRADRHEQCAVCLAQLQPGCRARILPCQHAFHVPCADSWLVDAAHN-SCPLCWRPV 192
            +  + TT +  R DR+E C +C+A+ + G   +ILPC HA+H  C D+WL     N SCP C + V
Sbjct:  245 KAQKITTHTFKRGDRYETCVICMAEYEEGDHLKILPCSHAYHCACIDTWLHTQPRNKSCPFCKQQV 310          
BLAST of Ggra10189.t1 vs. uniprot
Match: A0A0E0NG43 (RING-type domain-containing protein n=9 Tax=Oryza TaxID=4527 RepID=A0A0E0NG43_ORYRU)

HSP 1 Score: 61.6 bits (148), Expect = 3.720e-8
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0
Query:  146 CAVCLAQLQPGCRARILP-CQHAFHVPCADSWLVDAAHNSCPLCWRPVWQQQP 197
            CA+CLA L+PG R R+LP C H FHV C D WL+  A ++CP C +P++   P
Sbjct:  144 CAICLADLEPGERVRVLPKCNHGFHVRCVDRWLL--ARSTCPTCRQPLFATPP 194          
The following BLAST results are available for this feature:
BLAST of Ggra10189.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH751.060e-3943.00RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A7C9E6951.160e-955.00RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A8C4VX924.530e-938.89RING-type domain-containing protein n=1 Tax=Gopher... [more]
A0A7C9A6H66.080e-955.00RING-type E3 ubiquitin transferase n=2 Tax=Opuntia... [more]
A0A8C3SRZ81.010e-838.89RING-type domain-containing protein n=1 Tax=Chelyd... [more]
A0A674I9201.490e-837.50RING-type domain-containing protein n=1 Tax=Terrap... [more]
A0A8B8LF722.200e-849.02RING-type E3 ubiquitin transferase n=1 Tax=Abrus p... [more]
E3 ubiquitin-protein ligase RNF167-like n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014025A753.080e-839.68E3 ubiquitin-protein ligase RNF167-like n=1 Tax=Am... [more]
A0A3Q0FXN93.120e-840.91RING-type E3 ubiquitin transferase n=5 Tax=Crocody... [more]
A0A0E0NG433.720e-850.94RING-type domain-containing protein n=9 Tax=Oryza ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 146..188
e-value: 4.2E-6
score: 36.3
IPR001841Zinc finger, RING-typePFAMPF17123zf-RING_11coord: 145..172
e-value: 5.9E-9
score: 35.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 146..188
score: 11.766381
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 107..193
e-value: 8.1E-15
score: 56.3
NoneNo IPR availablePANTHERPTHR45798RING-H2 FINGER PROTEIN ATL61-RELATED-RELATEDcoord: 59..197
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 45..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..44
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..207
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 137..195
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 54..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:49537..50160 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10189.t1Ggra10189.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 49537..50160 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10189.t1 ID=Ggra10189.t1|Name=Ggra10189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=208bp
MPFLCDISLSKSAPSPSPPRAAAAHAVVPVLGVSLLSLLAYGAVTLSLNR
RFELPLAYVLIILGYLLLPGVGVLLVRRQRCIARQRALLHKLQHQPDAPH
ASLPNRVSHALHMAVRHLSASSRAVLSRVNRCTTKSTWRADRHEQCAVCL
AQLQPGCRARILPCQHAFHVPCADSWLVDAAHNSCPLCWRPVWQQQPDCN
SLPLKSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD