Ggra10189.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10189.t1
Unique NameGgra10189.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:49537..50160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34839.XP_005405827.1
Preferred nameZNRF4
PFAMsPA,zf-RING_11,zf-RING_2
Max annot lvl33208|Metazoa
KEGG koko:K15706,ko:K15715
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016020,GO:0019538,GO:0019941,GO:0030163,GO:0031984,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051603,GO:0071704,GO:0098827,GO:1901564,GO:1901565,GO:1901575
Evalue1.92e-10
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,38SX0@33154|Opisthokonta,3BM85@33208|Metazoa,3D0VV@33213|Bilateria,485H5@7711|Chordata,496EH@7742|Vertebrata,3JAJJ@40674|Mammalia,35KYE@314146|Euarchontoglires,4Q184@9989|Rodentia
EC2.3.2.27
Descriptionzinc RING finger protein
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10189Ggra10189Gracilaria gracilis GNS1m malegenetig00000016_pilon 49537..50160 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10189.t1.stop1Ggra10189.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 49537..49539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10189.t1.CDS1Ggra10189.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 49537..50160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10189.t1.exon1Ggra10189.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 49537..50160 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10189.t1.start1Ggra10189.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 50158..50160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10189.t1Ggra10189.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 49537..50160 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10189.t1 ID=Ggra10189.t1|Name=Ggra10189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=208bp
MPFLCDISLSKSAPSPSPPRAAAAHAVVPVLGVSLLSLLAYGAVTLSLNR
RFELPLAYVLIILGYLLLPGVGVLLVRRQRCIARQRALLHKLQHQPDAPH
ASLPNRVSHALHMAVRHLSASSRAVLSRVNRCTTKSTWRADRHEQCAVCL
AQLQPGCRARILPCQHAFHVPCADSWLVDAAHNSCPLCWRPVWQQQPDCN
SLPLKSS*
back to top

spliced messenger RNA

>Ggra10189.t1 ID=Ggra10189.t1|Name=Ggra10189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00000016_pilon:49537..50160- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTTCCTGTGTGATATCAGTCTGAGCAAGTCGGCGCCGTCGCCGTC
GCCGCCGCGCGCCGCCGCCGCGCACGCCGTCGTGCCCGTGCTCGGCGTGT
CGCTGCTCTCGCTGCTGGCGTACGGCGCCGTCACGCTGTCGCTCAACCGC
CGCTTCGAGCTGCCGCTGGCGTACGTGCTCATCATCCTGGGCTACCTGCT
ACTGCCCGGCGTGGGCGTGTTGCTGGTGCGTCGTCAGCGCTGCATCGCGC
GCCAGCGCGCGCTGTTGCACAAGCTGCAGCACCAGCCCGACGCGCCGCAC
GCGTCGTTGCCAAACCGCGTTTCGCACGCGTTGCACATGGCCGTGCGCCA
CCTCTCCGCCTCCTCGAGGGCCGTTTTGAGCCGCGTCAACCGCTGCACCA
CCAAGAGCACGTGGCGCGCCGACCGCCACGAGCAGTGTGCCGTGTGTCTG
GCGCAGCTGCAGCCGGGCTGCCGCGCGCGCATTCTGCCGTGCCAGCACGC
CTTTCATGTGCCGTGCGCCGACTCGTGGCTTGTTGACGCCGCGCACAACT
CCTGCCCGCTGTGTTGGCGCCCCGTGTGGCAGCAGCAGCCCGATTGCAAC
TCGCTGCCGCTCAAGTCTTCATGA
back to top

protein sequence of Ggra10189.t1

>Ggra10189.t1 ID=Ggra10189.t1|Name=Ggra10189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=208bp
MPFLCDISLSKSAPSPSPPRAAAAHAVVPVLGVSLLSLLAYGAVTLSLNR
RFELPLAYVLIILGYLLLPGVGVLLVRRQRCIARQRALLHKLQHQPDAPH
ASLPNRVSHALHMAVRHLSASSRAVLSRVNRCTTKSTWRADRHEQCAVCL
AQLQPGCRARILPCQHAFHVPCADSWLVDAAHNSCPLCWRPVWQQQPDCN
SLPLKSS*
back to top

mRNA from alignment at tig00000016_pilon:49537..50160-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10189.t1 ID=Ggra10189.t1|Name=Ggra10189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00000016_pilon:49537..50160- (Gracilaria gracilis GNS1m male)
ATGCCCTTCCTGTGTGATATCAGTCTGAGCAAGTCGGCGCCGTCGCCGTC
GCCGCCGCGCGCCGCCGCCGCGCACGCCGTCGTGCCCGTGCTCGGCGTGT
CGCTGCTCTCGCTGCTGGCGTACGGCGCCGTCACGCTGTCGCTCAACCGC
CGCTTCGAGCTGCCGCTGGCGTACGTGCTCATCATCCTGGGCTACCTGCT
ACTGCCCGGCGTGGGCGTGTTGCTGGTGCGTCGTCAGCGCTGCATCGCGC
GCCAGCGCGCGCTGTTGCACAAGCTGCAGCACCAGCCCGACGCGCCGCAC
GCGTCGTTGCCAAACCGCGTTTCGCACGCGTTGCACATGGCCGTGCGCCA
CCTCTCCGCCTCCTCGAGGGCCGTTTTGAGCCGCGTCAACCGCTGCACCA
CCAAGAGCACGTGGCGCGCCGACCGCCACGAGCAGTGTGCCGTGTGTCTG
GCGCAGCTGCAGCCGGGCTGCCGCGCGCGCATTCTGCCGTGCCAGCACGC
CTTTCATGTGCCGTGCGCCGACTCGTGGCTTGTTGACGCCGCGCACAACT
CCTGCCCGCTGTGTTGGCGCCCCGTGTGGCAGCAGCAGCCCGATTGCAAC
TCGCTGCCGCTCAAGTCTTCATGA
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:49537..50160-

>Ggra10189.t1 ID=Ggra10189.t1|Name=Ggra10189.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=624bp|location=Sequence derived from alignment at tig00000016_pilon:49537..50160- (Gracilaria gracilis GNS1m male)
ATGCCCTTCCTGTGTGATATCAGTCTGAGCAAGTCGGCGCCGTCGCCGTC
GCCGCCGCGCGCCGCCGCCGCGCACGCCGTCGTGCCCGTGCTCGGCGTGT
CGCTGCTCTCGCTGCTGGCGTACGGCGCCGTCACGCTGTCGCTCAACCGC
CGCTTCGAGCTGCCGCTGGCGTACGTGCTCATCATCCTGGGCTACCTGCT
ACTGCCCGGCGTGGGCGTGTTGCTGGTGCGTCGTCAGCGCTGCATCGCGC
GCCAGCGCGCGCTGTTGCACAAGCTGCAGCACCAGCCCGACGCGCCGCAC
GCGTCGTTGCCAAACCGCGTTTCGCACGCGTTGCACATGGCCGTGCGCCA
CCTCTCCGCCTCCTCGAGGGCCGTTTTGAGCCGCGTCAACCGCTGCACCA
CCAAGAGCACGTGGCGCGCCGACCGCCACGAGCAGTGTGCCGTGTGTCTG
GCGCAGCTGCAGCCGGGCTGCCGCGCGCGCATTCTGCCGTGCCAGCACGC
CTTTCATGTGCCGTGCGCCGACTCGTGGCTTGTTGACGCCGCGCACAACT
CCTGCCCGCTGTGTTGGCGCCCCGTGTGGCAGCAGCAGCCCGATTGCAAC
TCGCTGCCGCTCAAGTCTTCATGA
back to top