Ggra5994.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5994.t1
Unique NameGgra5994.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Homology
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BLAST of Ggra5994.t1 vs. uniprot
Match: R7QRX7 (C2H2-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRX7_CHOCR)

HSP 1 Score: 57.0 bits (136), Expect = 3.590e-6
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0 
Query:  104 SARTYKCEFCNLAFGRKHHKERHVANIHRNEKP 136
            S + YKCE+C+L FGRKHHKERHVANIH++  P
Sbjct:  149 SKKQYKCEYCDLDFGRKHHKERHVANIHKHVSP 181
The following BLAST results are available for this feature:
BLAST of Ggra5994.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QRX73.590e-669.70C2H2-type domain-containing protein n=1 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 137..160
e-value: 0.0045
score: 26.2
coord: 166..189
e-value: 0.0013
score: 28.0
coord: 108..131
e-value: 0.057
score: 22.5
coord: 195..218
e-value: 0.0013
score: 28.0
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 166..189
e-value: 4.8E-4
score: 20.4
coord: 195..218
e-value: 4.9E-4
score: 20.4
coord: 137..160
e-value: 0.0026
score: 18.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 197..218
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 110..131
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 168..189
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 139..160
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 195..218
score: 11.426865
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 108..136
score: 12.008791
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 166..194
score: 11.821743
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 137..165
score: 12.195839
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 136..162
e-value: 1.4E-7
score: 33.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 193..223
e-value: 1.8E-8
score: 36.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 98..135
e-value: 8.9E-6
score: 27.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 165..190
e-value: 6.1E-8
score: 34.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101
NoneNo IPR availablePANTHERPTHR24388ZINC FINGER PROTEINcoord: 71..184
coord: 82..227
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 106..140
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 131..184
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 174..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000227_piloncontigtig00000227_pilon:101287..102126 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5994.t1Ggra5994.t1Gracilaria gracilis GNS1m malemRNAtig00000227_pilon 101287..102126 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5994.t1 ID=Ggra5994.t1|Name=Ggra5994.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MDEEMTAKAFRRFVRRRGLIPADEEEQRQASAQQSWSQRASSSSQMFPLP
AAPVAQPPYSHEATTSTPPASADQHARMQRTQRSHEPTQPTRTARRRRNE
TDDSARTYKCEFCNLAFGRKHHKERHVANIHRNEKPYVCSICGHPFHQKP
NLDRHRATVHSELSPFQCEFCGLSFSRRSVLKTHLVTVHQRHRRYQCPLC
RRFFAQTTHLTEHMKKVHPQSPLPPQSSGGGGGSGGSGGSGGAFQNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf