Ggra5994.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5994.t1
Unique NameGgra5994.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000227_piloncontigtig00000227_pilon:101287..102126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5994Ggra5994Gracilaria gracilis GNS1m malegenetig00000227_pilon 101287..102126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5994.t1Ggra5994.t1Gracilaria gracilis GNS1m malepolypeptidetig00000227_pilon 101287..102126 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5994.t1.stop1Ggra5994.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000227_pilon 101287..101289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5994.t1.CDS1Ggra5994.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000227_pilon 101287..101631 -
Ggra5994.t1.CDS2Ggra5994.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000227_pilon 101728..102126 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5994.t1.exon1Ggra5994.t1.exon1Gracilaria gracilis GNS1m maleexontig00000227_pilon 101287..101631 -
Ggra5994.t1.exon2Ggra5994.t1.exon2Gracilaria gracilis GNS1m maleexontig00000227_pilon 101728..102126 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5994.t1.intron1Ggra5994.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000227_pilon 101632..101727 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5994.t1.start1Ggra5994.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000227_pilon 102124..102126 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5994.t1 ID=Ggra5994.t1|Name=Ggra5994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MDEEMTAKAFRRFVRRRGLIPADEEEQRQASAQQSWSQRASSSSQMFPLP
AAPVAQPPYSHEATTSTPPASADQHARMQRTQRSHEPTQPTRTARRRRNE
TDDSARTYKCEFCNLAFGRKHHKERHVANIHRNEKPYVCSICGHPFHQKP
NLDRHRATVHSELSPFQCEFCGLSFSRRSVLKTHLVTVHQRHRRYQCPLC
RRFFAQTTHLTEHMKKVHPQSPLPPQSSGGGGGSGGSGGSGGAFQNR*
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spliced messenger RNA

>Ggra5994.t1 ID=Ggra5994.t1|Name=Ggra5994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000227_pilon:101287..102126- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGGAGATGACAGCGAAAGCGTTTCGGCGCTTTGTGCGCCGGCG
CGGTCTGATCCCCGCCGACGAGGAAGAGCAGCGACAAGCCAGCGCGCAGC
AATCATGGTCACAACGGGCGTCTTCATCGTCGCAAATGTTCCCGCTGCCG
GCGGCACCGGTGGCTCAACCGCCGTACTCGCACGAGGCGACGACGTCGAC
GCCGCCCGCGTCGGCCGATCAACACGCAAGGATGCAACGCACGCAACGCA
GCCACGAGCCGACGCAGCCCACTCGCACGGCGCGGCGGCGGCGCAACGAG
ACGGATGACTCGGCCAGGACGTACAAGTGCGAGTTCTGCAACCTGGCGTT
TGGACGAAAGCACCACAAGGAGCGACATGTGGCGAATATCCATCGAAATG
AAAAACCGTACGTGTGTTCAATCTGCGGACACCCGTTCCATCAGAAGCCC
AACCTGGACAGGCACCGCGCGACGGTGCACTCCGAACTGAGCCCGTTTCA
GTGCGAGTTTTGCGGGCTGTCGTTCTCAAGACGCAGCGTGCTGAAGACGC
ATCTGGTGACGGTGCACCAGCGGCACAGGCGGTACCAGTGCCCGCTATGC
CGACGGTTCTTTGCTCAGACGACGCATCTGACGGAGCACATGAAGAAGGT
GCACCCGCAATCGCCGCTGCCGCCGCAGAGCTCCGGCGGGGGCGGGGGCA
GCGGGGGCAGCGGGGGCAGTGGGGGCGCGTTTCAGAACCGCTGA
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protein sequence of Ggra5994.t1

>Ggra5994.t1 ID=Ggra5994.t1|Name=Ggra5994.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MDEEMTAKAFRRFVRRRGLIPADEEEQRQASAQQSWSQRASSSSQMFPLP
AAPVAQPPYSHEATTSTPPASADQHARMQRTQRSHEPTQPTRTARRRRNE
TDDSARTYKCEFCNLAFGRKHHKERHVANIHRNEKPYVCSICGHPFHQKP
NLDRHRATVHSELSPFQCEFCGLSFSRRSVLKTHLVTVHQRHRRYQCPLC
RRFFAQTTHLTEHMKKVHPQSPLPPQSSGGGGGSGGSGGSGGAFQNR*
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mRNA from alignment at tig00000227_pilon:101287..102126-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5994.t1 ID=Ggra5994.t1|Name=Ggra5994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000227_pilon:101287..102126- (Gracilaria gracilis GNS1m male)
ATGGACGAGGAGATGACAGCGAAAGCGTTTCGGCGCTTTGTGCGCCGGCG
CGGTCTGATCCCCGCCGACGAGGAAGAGCAGCGACAAGCCAGCGCGCAGC
AATCATGGTCACAACGGGCGTCTTCATCGTCGCAAATGTTCCCGCTGCCG
GCGGCACCGGTGGCTCAACCGCCGTACTCGCACGAGGCGACGACGTCGAC
GCCGCCCGCGTCGGCCGATCAACACGCAAGGATGCAACGCACGCAACGCA
GCCACGAGCCGACGCAGCCCACTCGCACGGCGCGGCGGCGGCGCAACGAG
ACGGATGACTCGGCCAGGACGTACAAGTGCGAGTTCTGCAACCTGGCGTT
TGGACGAAAGCACCACAAGGAGCGACATGTGGCGAATATCCATCGAAATG
TAAGTGAAAGGCGCGCGCTTGAAGCGGTTCGTAGAGGTACATAGACAGCG
TCGGTTGGACTAACTGTTTTCGCATTCGGTTTGTTGTTGCTATAGGAAAA
ACCGTACGTGTGTTCAATCTGCGGACACCCGTTCCATCAGAAGCCCAACC
TGGACAGGCACCGCGCGACGGTGCACTCCGAACTGAGCCCGTTTCAGTGC
GAGTTTTGCGGGCTGTCGTTCTCAAGACGCAGCGTGCTGAAGACGCATCT
GGTGACGGTGCACCAGCGGCACAGGCGGTACCAGTGCCCGCTATGCCGAC
GGTTCTTTGCTCAGACGACGCATCTGACGGAGCACATGAAGAAGGTGCAC
CCGCAATCGCCGCTGCCGCCGCAGAGCTCCGGCGGGGGCGGGGGCAGCGG
GGGCAGCGGGGGCAGTGGGGGCGCGTTTCAGAACCGCTGA
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Coding sequence (CDS) from alignment at tig00000227_pilon:101287..102126-

>Ggra5994.t1 ID=Ggra5994.t1|Name=Ggra5994.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000227_pilon:101287..102126- (Gracilaria gracilis GNS1m male)
ATGGACGAGGAGATGACAGCGAAAGCGTTTCGGCGCTTTGTGCGCCGGCG
CGGTCTGATCCCCGCCGACGAGGAAGAGCAGCGACAAGCCAGCGCGCAGC
AATCATGGTCACAACGGGCGTCTTCATCGTCGCAAATGTTCCCGCTGCCG
GCGGCACCGGTGGCTCAACCGCCGTACTCGCACGAGGCGACGACGTCGAC
GCCGCCCGCGTCGGCCGATCAACACGCAAGGATGCAACGCACGCAACGCA
GCCACGAGCCGACGCAGCCCACTCGCACGGCGCGGCGGCGGCGCAACGAG
ACGGATGACTCGGCCAGGACGTACAAGTGCGAGTTCTGCAACCTGGCGTT
TGGACGAAAGCACCACAAGGAGCGACATGTGGCGAATATCCATCGAAATG
AAAAACCGTACGTGTGTTCAATCTGCGGACACCCGTTCCATCAGAAGCCC
AACCTGGACAGGCACCGCGCGACGGTGCACTCCGAACTGAGCCCGTTTCA
GTGCGAGTTTTGCGGGCTGTCGTTCTCAAGACGCAGCGTGCTGAAGACGC
ATCTGGTGACGGTGCACCAGCGGCACAGGCGGTACCAGTGCCCGCTATGC
CGACGGTTCTTTGCTCAGACGACGCATCTGACGGAGCACATGAAGAAGGT
GCACCCGCAATCGCCGCTGCCGCCGCAGAGCTCCGGCGGGGGCGGGGGCA
GCGGGGGCAGCGGGGGCAGTGGGGGCGCGTTTCAGAACCGCTGA
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