Ggra11019.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11019.t1
Unique NameGgra11019.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:139365..140486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11019Ggra11019Gracilaria gracilis GNS1m malegenetig00000224_pilon 139365..140486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11019.t1Ggra11019.t1Gracilaria gracilis GNS1m malepolypeptidetig00000224_pilon 139365..140486 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11019.t1.stop1Ggra11019.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000224_pilon 139365..139367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11019.t1.CDS1Ggra11019.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000224_pilon 139365..140250 -
Ggra11019.t1.CDS2Ggra11019.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000224_pilon 140461..140486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11019.t1.exon1Ggra11019.t1.exon1Gracilaria gracilis GNS1m maleexontig00000224_pilon 139365..140250 -
Ggra11019.t1.exon2Ggra11019.t1.exon2Gracilaria gracilis GNS1m maleexontig00000224_pilon 140461..140486 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11019.t1.intron1Ggra11019.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000224_pilon 140251..140460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11019.t1.start1Ggra11019.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000224_pilon 140484..140486 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11019.t1 ID=Ggra11019.t1|Name=Ggra11019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MVLIHLKSHDPAFSFEPDPRPCVAIDRYDVRSDSIFNVSSESIIISCIRV
DGDQFFQHIGNRSLLDKEVRCAESYLYKYVGEGIVVETIGVNQTQTCVDG
FGCVYTEVRGQEFLISGVIVEEEIDVITQVEYLVTILSKDFDIGKNQESV
LGQRGLGAFIEFVTEPLELRRRILTGSETTTCPFFLSKDATEVPLGLICA
IVITWVLSFLTFVLTLFLKRSLFYDMGDPLHWAQRTFRHIDDPVTGNPVV
TSVYEHGERHMYVSSSSSEEDSFLKILATKLGSRFRRRNREMAEGSVHEQ
LSL*
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spliced messenger RNA

>Ggra11019.t1 ID=Ggra11019.t1|Name=Ggra11019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000224_pilon:139365..140486- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACTCATTCATCTCAAGTCACATGATCCCGCCTTCTCGTTTGAACC
TGATCCTCGACCTTGCGTCGCTATTGATAGATATGACGTCAGAAGTGATT
CAATCTTCAATGTCTCTAGTGAATCGATCATCATATCTTGCATTCGGGTC
GATGGTGATCAGTTCTTCCAGCATATTGGCAATCGCAGCCTTTTGGATAA
GGAAGTGCGCTGCGCCGAAAGCTACCTTTACAAGTATGTTGGAGAAGGTA
TCGTTGTGGAGACCATTGGTGTGAATCAAACCCAGACATGTGTTGATGGA
TTTGGTTGCGTGTACACTGAAGTACGGGGACAGGAATTCCTTATCTCTGG
GGTAATTGTGGAAGAAGAAATTGATGTAATCACTCAAGTAGAATATCTTG
TCACCATTTTGTCGAAAGACTTTGATATAGGCAAAAACCAAGAGAGTGTG
TTAGGGCAGCGTGGGCTCGGTGCCTTCATTGAGTTTGTGACGGAACCGTT
AGAATTGCGGCGAAGAATACTCACGGGATCCGAAACAACCACCTGCCCAT
TCTTCCTCTCGAAGGACGCCACCGAGGTTCCGCTCGGATTAATATGTGCC
ATCGTTATAACCTGGGTTCTCTCTTTTCTTACGTTTGTCTTGACGCTGTT
CTTGAAACGGAGCCTTTTTTATGACATGGGAGATCCTCTGCATTGGGCGC
AGCGCACTTTTAGACACATTGACGATCCCGTCACAGGAAATCCTGTTGTC
ACCAGCGTGTATGAACATGGTGAACGGCACATGTACGTATCGAGCTCGTC
GTCGGAAGAGGACAGTTTCTTGAAGATTTTGGCAACAAAACTGGGTAGCA
GGTTCAGGCGCAGGAATCGAGAAATGGCCGAAGGTTCAGTTCATGAACAG
CTCTCATTATAG
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protein sequence of Ggra11019.t1

>Ggra11019.t1 ID=Ggra11019.t1|Name=Ggra11019.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MVLIHLKSHDPAFSFEPDPRPCVAIDRYDVRSDSIFNVSSESIIISCIRV
DGDQFFQHIGNRSLLDKEVRCAESYLYKYVGEGIVVETIGVNQTQTCVDG
FGCVYTEVRGQEFLISGVIVEEEIDVITQVEYLVTILSKDFDIGKNQESV
LGQRGLGAFIEFVTEPLELRRRILTGSETTTCPFFLSKDATEVPLGLICA
IVITWVLSFLTFVLTLFLKRSLFYDMGDPLHWAQRTFRHIDDPVTGNPVV
TSVYEHGERHMYVSSSSSEEDSFLKILATKLGSRFRRRNREMAEGSVHEQ
LSL*
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mRNA from alignment at tig00000224_pilon:139365..140486-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11019.t1 ID=Ggra11019.t1|Name=Ggra11019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000224_pilon:139365..140486- (Gracilaria gracilis GNS1m male)
ATGGTACTCATTCATCTCAAGTCACAGTATGTCAGTCTCATCATCACACT
TCTATCCGGAGCCGCAGAACTATGTCTCTTCGGTGCTACGCTGGGAGCCA
ACAAATACATAGAATGTAACGCTCTCAAACGCGGGGGACAGGTTAGCGTT
CGTCGTCATTGCAGCCGAACCAAGTTTCTCGCCGTCTTGGCCATGGTTGT
GTTCATTGTTCTGGAGCTTATCGCTTCGTTTTTCAGTGATCCCGCCTTCT
CGTTTGAACCTGATCCTCGACCTTGCGTCGCTATTGATAGATATGACGTC
AGAAGTGATTCAATCTTCAATGTCTCTAGTGAATCGATCATCATATCTTG
CATTCGGGTCGATGGTGATCAGTTCTTCCAGCATATTGGCAATCGCAGCC
TTTTGGATAAGGAAGTGCGCTGCGCCGAAAGCTACCTTTACAAGTATGTT
GGAGAAGGTATCGTTGTGGAGACCATTGGTGTGAATCAAACCCAGACATG
TGTTGATGGATTTGGTTGCGTGTACACTGAAGTACGGGGACAGGAATTCC
TTATCTCTGGGGTAATTGTGGAAGAAGAAATTGATGTAATCACTCAAGTA
GAATATCTTGTCACCATTTTGTCGAAAGACTTTGATATAGGCAAAAACCA
AGAGAGTGTGTTAGGGCAGCGTGGGCTCGGTGCCTTCATTGAGTTTGTGA
CGGAACCGTTAGAATTGCGGCGAAGAATACTCACGGGATCCGAAACAACC
ACCTGCCCATTCTTCCTCTCGAAGGACGCCACCGAGGTTCCGCTCGGATT
AATATGTGCCATCGTTATAACCTGGGTTCTCTCTTTTCTTACGTTTGTCT
TGACGCTGTTCTTGAAACGGAGCCTTTTTTATGACATGGGAGATCCTCTG
CATTGGGCGCAGCGCACTTTTAGACACATTGACGATCCCGTCACAGGAAA
TCCTGTTGTCACCAGCGTGTATGAACATGGTGAACGGCACATGTACGTAT
CGAGCTCGTCGTCGGAAGAGGACAGTTTCTTGAAGATTTTGGCAACAAAA
CTGGGTAGCAGGTTCAGGCGCAGGAATCGAGAAATGGCCGAAGGTTCAGT
TCATGAACAGCTCTCATTATAG
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Coding sequence (CDS) from alignment at tig00000224_pilon:139365..140486-

>Ggra11019.t1 ID=Ggra11019.t1|Name=Ggra11019.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000224_pilon:139365..140486- (Gracilaria gracilis GNS1m male)
ATGGTACTCATTCATCTCAAGTCACATGATCCCGCCTTCTCGTTTGAACC
TGATCCTCGACCTTGCGTCGCTATTGATAGATATGACGTCAGAAGTGATT
CAATCTTCAATGTCTCTAGTGAATCGATCATCATATCTTGCATTCGGGTC
GATGGTGATCAGTTCTTCCAGCATATTGGCAATCGCAGCCTTTTGGATAA
GGAAGTGCGCTGCGCCGAAAGCTACCTTTACAAGTATGTTGGAGAAGGTA
TCGTTGTGGAGACCATTGGTGTGAATCAAACCCAGACATGTGTTGATGGA
TTTGGTTGCGTGTACACTGAAGTACGGGGACAGGAATTCCTTATCTCTGG
GGTAATTGTGGAAGAAGAAATTGATGTAATCACTCAAGTAGAATATCTTG
TCACCATTTTGTCGAAAGACTTTGATATAGGCAAAAACCAAGAGAGTGTG
TTAGGGCAGCGTGGGCTCGGTGCCTTCATTGAGTTTGTGACGGAACCGTT
AGAATTGCGGCGAAGAATACTCACGGGATCCGAAACAACCACCTGCCCAT
TCTTCCTCTCGAAGGACGCCACCGAGGTTCCGCTCGGATTAATATGTGCC
ATCGTTATAACCTGGGTTCTCTCTTTTCTTACGTTTGTCTTGACGCTGTT
CTTGAAACGGAGCCTTTTTTATGACATGGGAGATCCTCTGCATTGGGCGC
AGCGCACTTTTAGACACATTGACGATCCCGTCACAGGAAATCCTGTTGTC
ACCAGCGTGTATGAACATGGTGAACGGCACATGTACGTATCGAGCTCGTC
GTCGGAAGAGGACAGTTTCTTGAAGATTTTGGCAACAAAACTGGGTAGCA
GGTTCAGGCGCAGGAATCGAGAAATGGCCGAAGGTTCAGTTCATGAACAG
CTCTCATTATAG
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