Ggra11019.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11019.t1
Unique NameGgra11019.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Homology
BLAST of Ggra11019.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 182 bits (462), Expect = 5.820e-51
Identity = 127/328 (38.72%), Postives = 171/328 (52.13%), Query Frame = 0
Query:   10 DPAFSFEPDPRPCVAIDRYDVRSDSIFNVSSES-IIISCIRVDGDQFFQHIGNRSL---LDKEVRCAESYLYKYVGEG------------------IVVETI-----------------GVNQTQTCVDGFGCVYTEVRGQEFLISGVIVEEEIDVI---TQVEYLVTILSKDFDIGKNQESVLGQRGLGAFIEFVTEPLELRRRILTGSETTTCPF-FLSKDATEVPLGLICAIVITWVLSFLTFVLTLFLKRSLFYDMGDPLHWAQRTFRHIDDPVTGNPVVTSVYEHGERHMYVSSSSSEEDSFLKILAT-KLGSRFRRRNREMA 293
            DPA   +     C+A+DR D+R     + + E  I+I CI +  D F Q  GN SL       VRC +  LY+Y  E                   +V+E I                  V Q      GF  VY     +E  + G +V +++ +    T V Y  + LS++F           +R L A+ + VT+P+E+R+R+  G E   C F    KD T VPLGL+  IV  W+LSFLTF  TL L+RS+FYDM DPLHWAQRT+RHID+P+ GNPVVTSVYEHGER MYVS S+S +D  L  +   ++   +RRRNR+ A
Sbjct:   80 DPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEV-GPLVNQQVVIPFLETSVRYNTSGLSRNF----------ARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVSGSASNDDDLLSRMRNIRITWPWRRRNRDNA 396          
BLAST of Ggra11019.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 122 bits (307), Expect = 1.140e-28
Identity = 99/303 (32.67%), Postives = 143/303 (47.19%), Query Frame = 0
Query:   10 DPAFSFEPDPRPCVAIDRYDVRSDSIFNVSSESIIIS--CIRVDGDQFFQHIGNRS----------LLDKEV-RCAES-YLYKYVGEGIVVETIGVNQTQTCVDGFGCVYTEVRGQEFLISGVIVEEEIDVITQVEYLVTILSKDFDIG-KNQESVLGQRGLGAFIEFVTEPLELRRRILTGSETTTCPFFLSKDATEVPLGLICAIVITWVLSFLTFVLTLFLKRSLFYDMGDPLHWAQRTFRHIDDPVTGNPVVTSVYEHGERHMYVSSSS--SEEDSFLKILATKLGSRFRR-RNREMAE 294
            DP    E   + C ++D   V+   + N+S+++ ++   CI ++   F+QH GN S          + D EV  C +   LY    E    E +       CV G  CV+    G E   +  +  E++  +      + +            ES    R +    + VT+   LRR +  GS  T C F    DAT V  G I AIVI W LS   FV +  ++R +FYDM DPLHWAQ+T R  D   T NPVVT+VYE+G R + V+ SS  SE++S        +G+ FRR R +E +E
Sbjct:   80 DPDDKTELVRKNCTSLDALTVQQ-GLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVVGCV-GTSCVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRSSAPSEQES-------SIGTLFRRKRTKESSE 373          
BLAST of Ggra11019.t1 vs. uniprot
Match: A0A2V3IMC1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 112 bits (280), Expect = 5.500e-25
Identity = 79/261 (30.27%), Postives = 129/261 (49.43%), Query Frame = 0
Query:   21 PCVAIDRYDVRSDSIFNVSSESIIIS--CIRVDGDQFFQHIGNRSLLDKEVRCAESYLYKY-VGEGIVVETIGVNQTQTCVDGFGCVYTEVRGQEFLISGVIVEEEID------VITQVEYLVTILSKDFDIGKNQESVLGQRGLGAFIEFVTEPLELRRRILTGSETTTCPFFLSK-DATEVPLGLICAIVITWVLSFLTFVLTLFLKRSLFYDMGDPLHWAQRTFRHIDDPVTGNPVVTSVYEHGERHMYVSSSSSEED 271
            PCV++D   +R         E+  I   C  + G+  +  +GN SL D +VRC++   Y Y +      + + V+  +    G  CV+   +      SG ++ + +       V T++ +L T L  D         V   R + AF+E V +P ELRRR+  GS    CPF     D T VP  L+ +++  W+++ L FVL L L+R +F+D+G+PLHWA +  + +D+ V  +PVVT   E     +YVS   ++ +
Sbjct:   91 PCVSVDNV-LRLQGPQGEFREADFIEGKCQTLRGNFNYVRVGNVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGETCVFVFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFD---SSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCATEDEALALYVSERGNKAE 347          
BLAST of Ggra11019.t1 vs. uniprot
Match: A0A2V3J5B4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5B4_9FLOR)

HSP 1 Score: 75.9 bits (185), Expect = 6.830e-12
Identity = 69/232 (29.74%), Postives = 112/232 (48.28%), Query Frame = 0
Query:   41 ESIIISCIRVDGDQFFQHIGNRSLLDKEVRCAESYLYKYVG---EGIVVETIGVNQTQTCVDGF----GCVYTEVRGQEFLISGVIVEEEIDVITQVEYLVTILSKDFDIGKNQESVLGQRGLGAFIEFVTEPLELRRRILTGSETTTCPFFL-SKDATEVPLGLICAIVITWVLSFLTFVLTLFLKRSLFYDMGDPLHWAQRT-FRHIDDPVTGNPVVTSVYEHGERHMYV 263
            ++I ISC+ V G + F   GN SL   +V+C    ++ YV    E +   + GV  T    D F     C    ++ +  L+      EE +     E+  T L     IG++Q   + ++ L  +   V++  E+RRRILT    + C F   + + TE+ L      VI W +    F++ LF++R +FYDM + LHWA++T +R ++D  TG        E G+  M+V
Sbjct:  119 DNIGISCVNVGGGEVFVKNGNYSLDTLDVQCGAKPIFSYVSAEKEFLPPASPGVI-THCEQDEFLNMGTCASVSLQNKTRLLISERFSEESNFEIDAEFRPTQLF--MTIGEDQLESIAKQLLTLYTIGVSDEAEVRRRILTDGIRSQCSFDAETHEFTEIKLWAFILTVIIWAMCITFFLVMLFVRRGVFYDMSNALHWAEKTVYRQLEDD-TGT-------EKGQVRMFV 339          
BLAST of Ggra11019.t1 vs. uniprot
Match: A0A2V3INJ9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INJ9_9FLOR)

HSP 1 Score: 67.4 bits (163), Expect = 4.130e-9
Identity = 64/271 (23.62%), Postives = 119/271 (43.91%), Query Frame = 0
Query:   21 PCVAID---RYDVRSDSIFNVSSESIIISCIRVDGDQFFQHIGNRSLLDKEVRCAESYLYKYVGEGIVVETIGVNQTQTCVDG----FGCVYTEVRGQEFLISGVIVEEEIDVITQVEYLVTILSKDFDI--------------GKNQESVLGQRGLGAFIEFVTEPLELRRRILTGSETTTCPFFLSKDA----TEVPLGLICAIVITWVLSFLTFVLTLFLKR--SLFYDMGDPLHWAQRTFRHIDDPVTGNPVVTSV-YEHGERHMYV 263
            PCV++D   R+ V + S     +ES    C  ++  +F +H    S+      C +  L+++      + T  ++  ++ +D       C    V  ++     V+  E    I+ + Y     ++ FDI               + Q   LG R     +E V +P+  R R+ +G    TC     +D     T++   +  A+V+ W   FLT+ +   +K   + F+DM DP+HWA+RT+R     +  + V+ +V +E+G+R + V
Sbjct:   56 PCVSVDTSLRFSVGNHS---PQAESAATGCRTLNRGRFTEHNATFSMSTGRTACGKKPLFRFYLNSTTLFTNLIDLQRSAIDTENHTVACASRPVSTRDNKCLLVLRAENDLFISDLLYTFPPAAQVFDIEQLPFSATRLPYKPSQEQAEFLGARAANVLLEGVRKPVLFRHRVFSGFSNETCR---ERDVDPLHTQIHPAMFTALVLIWCACFLTYTVLRCVKPLGTPFFDMRDPMHWAERTYRPSRVILERDAVIQAVVFENGKRRVLV 320          
The following BLAST results are available for this feature:
BLAST of Ggra11019.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IT055.820e-5138.72Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C21.140e-2832.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMC15.500e-2530.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5B46.830e-1229.74Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INJ94.130e-923.62Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..194
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 195..218
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 219..303
NoneNo IPR availableTMHMMTMhelixcoord: 194..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:139365..140486 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11019.t1Ggra11019.t1Gracilaria gracilis GNS1m malemRNAtig00000224_pilon 139365..140486 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11019.t1 ID=Ggra11019.t1|Name=Ggra11019.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MVLIHLKSHDPAFSFEPDPRPCVAIDRYDVRSDSIFNVSSESIIISCIRV
DGDQFFQHIGNRSLLDKEVRCAESYLYKYVGEGIVVETIGVNQTQTCVDG
FGCVYTEVRGQEFLISGVIVEEEIDVITQVEYLVTILSKDFDIGKNQESV
LGQRGLGAFIEFVTEPLELRRRILTGSETTTCPFFLSKDATEVPLGLICA
IVITWVLSFLTFVLTLFLKRSLFYDMGDPLHWAQRTFRHIDDPVTGNPVV
TSVYEHGERHMYVSSSSSEEDSFLKILATKLGSRFRRRNREMAEGSVHEQ
LSL*
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