Ggra790.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra790.t1
Unique NameGgra790.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000218_piloncontigtig00000218_pilon:59434..60600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra790Ggra790Gracilaria gracilis GNS1m malegenetig00000218_pilon 59434..60600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra790.t1Ggra790.t1Gracilaria gracilis GNS1m malepolypeptidetig00000218_pilon 59434..60600 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra790.t1.start1Ggra790.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000218_pilon 59434..59436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra790.t1.CDS1Ggra790.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000218_pilon 59434..59612 +
Ggra790.t1.CDS2Ggra790.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000218_pilon 59809..59967 +
Ggra790.t1.CDS3Ggra790.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000218_pilon 60175..60415 +
Ggra790.t1.CDS4Ggra790.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000218_pilon 60559..60600 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra790.t1.exon1Ggra790.t1.exon1Gracilaria gracilis GNS1m maleexontig00000218_pilon 59434..59612 +
Ggra790.t1.exon2Ggra790.t1.exon2Gracilaria gracilis GNS1m maleexontig00000218_pilon 59809..59967 +
Ggra790.t1.exon3Ggra790.t1.exon3Gracilaria gracilis GNS1m maleexontig00000218_pilon 60175..60415 +
Ggra790.t1.exon4Ggra790.t1.exon4Gracilaria gracilis GNS1m maleexontig00000218_pilon 60559..60600 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra790.t1.intron1Ggra790.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000218_pilon 59613..59808 +
Ggra790.t1.intron2Ggra790.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000218_pilon 59968..60174 +
Ggra790.t1.intron3Ggra790.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000218_pilon 60416..60558 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra790.t1.stop1Ggra790.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000218_pilon 60598..60600 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra790.t1 ID=Ggra790.t1|Name=Ggra790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp
MFAFVTPVVACTTAVIIVPNCRYVHAKPACSVKWRPAKQANVPSTPPHNA
IATASRTPPWHYNHTPLVLLPKPSALPLAWVKHTLLHLESDVVRTHDLDA
AFFIRFLATQTKFWRTRLLWLLSPACTSLDGQLVLVSASAYFSEMFLINL
KAQYVDLIVTMLSGVAELCLYGSTFAFNSYAECDALKRRKQVRVRHKKWF
CLQPHN*
back to top

spliced messenger RNA

>Ggra790.t1 ID=Ggra790.t1|Name=Ggra790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000218_pilon:59434..60600+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTTCGTCACGCCCGTCGTGGCATGCACCACCGCCGTCATCAT
CGTCCCCAATTGCCGATACGTCCACGCCAAGCCCGCGTGCAGCGTCAAAT
GGCGGCCCGCGAAGCAGGCAAACGTACCAAGCACGCCGCCCCACAACGCG
ATCGCCACCGCCAGTCGCACTCCGCCATGGCACTACAACCACACGCCGCT
GGTGCTGCTTCCCAAGCCGTCTGCGTTGCCGCTTGCGTGGGTCAAACACA
CTCTGCTGCATCTCGAGTCGGACGTCGTGCGCACACACGATCTCGATGCT
GCCTTCTTCATCCGTTTCTTGGCAACGCAGACCAAGTTTTGGCGCACTCG
TCTTCTGTGGCTTCTGTCCCCTGCTTGCACCTCACTTGACGGCCAACTCG
TGCTAGTGTCGGCCTCCGCGTACTTTTCAGAGATGTTTCTCATTAATCTC
AAGGCGCAATATGTCGATCTTATCGTCACCATGTTGTCAGGTGTTGCCGA
ACTATGTCTTTATGGTTCCACGTTCGCTTTTAACAGCTACGCCGAATGTG
ACGCTCTCAAACGAAGGAAACAGGTTAGAGTTCGACATAAGAAATGGTTC
TGTCTTCAACCTCACAACTGA
back to top

protein sequence of Ggra790.t1

>Ggra790.t1 ID=Ggra790.t1|Name=Ggra790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MFAFVTPVVACTTAVIIVPNCRYVHAKPACSVKWRPAKQANVPSTPPHNA
IATASRTPPWHYNHTPLVLLPKPSALPLAWVKHTLLHLESDVVRTHDLDA
AFFIRFLATQTKFWRTRLLWLLSPACTSLDGQLVLVSASAYFSEMFLINL
KAQYVDLIVTMLSGVAELCLYGSTFAFNSYAECDALKRRKQVRVRHKKWF
CLQPHN*
back to top

mRNA from alignment at tig00000218_pilon:59434..60600+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra790.t1 ID=Ggra790.t1|Name=Ggra790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000218_pilon:59434..60600+ (Gracilaria gracilis GNS1m male)
ATGTTCGCCTTCGTCACGCCCGTCGTGGCATGCACCACCGCCGTCATCAT
CGTCCCCAATTGCCGATACGTCCACGCCAAGCCCGCGTGCAGCGTCAAAT
GGCGGCCCGCGAAGCAGGCAAACGTACCAAGCACGCCGCCCCACAACGCG
ATCGCCACCGCCAGTCGCACTCCGCCATGGTACTTGAGCCAGAGCGCTTC
GAATCGTCGAGACGCGCCACCGCCACCAACGCCCTCCTCCACCTTAGTGC
GCACATGACTATACGCTTGGCGTCTCCGTCTTCGTCATCGCCCTCACGCT
TTACGACCTGTTACGCTACTTCAGTCCGTCCCACGTCTTCCCCCGAAACA
TCTTTTCAAACCTTCCGTCCGCCAGGCACTACAACCACACGCCGCTGGTG
CTGCTTCCCAAGCCGTCTGCGTTGCCGCTTGCGTGGGTCAAACACACTCT
GCTGCATCTCGAGTCGGACGTCGTGCGCACACACGATCTCGATGCTGCCT
TCTTCATCCGTTTCTTGGCAACGCAGACCAAGTTGTGTGCGCGCAGCAAC
CACGCATACAGCAGTGCCTACAGTGCATGTCCATGATGGTATAGAGTGAT
GAAAGCACAAGCTTGGCGGTAAGGCGAAGAAGCCGAGCTACAAACGTCAC
GGACGATGGACACTGGGCGATGCCGCGGCAGCCGCTGAGCTGGTGGCGAC
GGAGCGCTTACGTAACGGTAAAGCTCGTGCGCTAATATCAGTTGGCGCAC
TCGTCTTCTGTGGCTTCTGTCCCCTGCTTGCACCTCACTTGACGGCCAAC
TCGTGCTAGTGTCGGCCTCCGCGTACTTTTCAGAGATGTTTCTCATTAAT
CTCAAGGCGCAATATGTCGATCTTATCGTCACCATGTTGTCAGGTGTTGC
CGAACTATGTCTTTATGGTTCCACGTTCGCTTTTAACAGCTACGCCGAAT
GTGACGCTCTCAAACGAAGGAAACAGGTTAGAGTACGTCGTTATATCTCT
CGAACCAAGTTTCTCGCCGTAGTTGCAATGCTTGTCTTCATCATTCTAGA
AGTTATCCTGTCCTCTTTCAGTGATCCTGACTTCTCTCGTGAGGAACAAC
GTCGTCCTTGTCTCGCCGTTGATAGGTTCGACATAAGAAATGGTTCTGTC
TTCAACCTCACAACTGA
back to top

Coding sequence (CDS) from alignment at tig00000218_pilon:59434..60600+

>Ggra790.t1 ID=Ggra790.t1|Name=Ggra790.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00000218_pilon:59434..60600+ (Gracilaria gracilis GNS1m male)
ATGTTCGCCTTCGTCACGCCCGTCGTGGCATGCACCACCGCCGTCATCAT
CGTCCCCAATTGCCGATACGTCCACGCCAAGCCCGCGTGCAGCGTCAAAT
GGCGGCCCGCGAAGCAGGCAAACGTACCAAGCACGCCGCCCCACAACGCG
ATCGCCACCGCCAGTCGCACTCCGCCATGGCACTACAACCACACGCCGCT
GGTGCTGCTTCCCAAGCCGTCTGCGTTGCCGCTTGCGTGGGTCAAACACA
CTCTGCTGCATCTCGAGTCGGACGTCGTGCGCACACACGATCTCGATGCT
GCCTTCTTCATCCGTTTCTTGGCAACGCAGACCAAGTTTTGGCGCACTCG
TCTTCTGTGGCTTCTGTCCCCTGCTTGCACCTCACTTGACGGCCAACTCG
TGCTAGTGTCGGCCTCCGCGTACTTTTCAGAGATGTTTCTCATTAATCTC
AAGGCGCAATATGTCGATCTTATCGTCACCATGTTGTCAGGTGTTGCCGA
ACTATGTCTTTATGGTTCCACGTTCGCTTTTAACAGCTACGCCGAATGTG
ACGCTCTCAAACGAAGGAAACAGGTTAGAGTTCGACATAAGAAATGGTTC
TGTCTTCAACCTCACAACTGA
back to top