Ggra790.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra790.t1
Unique NameGgra790.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Homology
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BLAST of Ggra790.t1 vs. uniprot
Match: A0A2V3IHW5 (CSC1-like protein ERD4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHW5_9FLOR)

HSP 1 Score: 68.6 bits (166), Expect = 5.690e-10
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0 
Query:   61 HYNHTPLVLLPKPSALPLAWVKHTLLHLESDVVRTHDLDAAFFIRFLATQTKFW 114
            +Y+ TPL +LP PS  PL+W++ TL + E D +RTH LD AFFIRFLATQ K +
Sbjct:   61 NYDQTPLQVLPSPSPRPLSWLRSTLNYSEQDTIRTHGLDVAFFIRFLATQAKIF 114
[Close]
BLAST of Ggra790.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 58.9 bits (141), Expect = 9.020e-7
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0 
Query:  148 INLKAQYVDLIVTMLSGVAELCLYGSTFAFNSYAECDALKRRKQVRVR 195
            I LK+Q+V LIVT++SG+AEL L+G+   FN Y+EC AL++ +QV VR
Sbjct:    4 IPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVR 51
[Close]
BLAST of Ggra790.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-6
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 0 
Query:  145 MFLINLKAQYVDLIVTMLSGVAELCLYGSTFAFNSYAECDALKRRKQVRVRH 196
            M LI LK+QY  LIVT++SG+AEL L  +   FN Y EC AL+   +V VRH
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRH 52
The following BLAST results are available for this feature:
BLAST of Ggra790.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHW55.690e-1057.41CSC1-like protein ERD4 n=1 Tax=Gracilariopsis chor... [more]
A0A2V3IT059.020e-756.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C22.140e-653.85Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..206
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availableTMHMMTMhelixcoord: 120..142
NoneNo IPR availableTMHMMTMhelixcoord: 157..179
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000218_piloncontigtig00000218_pilon:59434..60600 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra790.t1Ggra790.t1Gracilaria gracilis GNS1m malemRNAtig00000218_pilon 59434..60600 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra790.t1 ID=Ggra790.t1|Name=Ggra790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MFAFVTPVVACTTAVIIVPNCRYVHAKPACSVKWRPAKQANVPSTPPHNA
IATASRTPPWHYNHTPLVLLPKPSALPLAWVKHTLLHLESDVVRTHDLDA
AFFIRFLATQTKFWRTRLLWLLSPACTSLDGQLVLVSASAYFSEMFLINL
KAQYVDLIVTMLSGVAELCLYGSTFAFNSYAECDALKRRKQVRVRHKKWF
CLQPHN*
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