Ggra9982.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9982.t1
Unique NameGgra9982.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:94991..95424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003057152.1
PFAMsDUF4787
Max annot lvl2759|Eukaryota
KEGG koko:K03686
Evalue2.44e-12
EggNOG OGs2BRQZ@1|root,2S1X1@2759|Eukaryota
DescriptionDomain of unknown function (DUF4787)
COG categoryS
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9982Ggra9982Gracilaria gracilis GNS1m malegenetig00000213_pilon 94991..95424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9982.t1Ggra9982.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 94991..95424 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9982.t1.stop1Ggra9982.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 94991..94993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9982.t1.CDS1Ggra9982.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 94991..95104 -
Ggra9982.t1.CDS2Ggra9982.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 95185..95424 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9982.t1.exon1Ggra9982.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 94991..95104 -
Ggra9982.t1.exon2Ggra9982.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 95185..95424 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9982.t1.intron1Ggra9982.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 95105..95184 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9982.t1.start1Ggra9982.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 95422..95424 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9982.t1 ID=Ggra9982.t1|Name=Ggra9982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=118bp
MSCPSALAKLVVLVLLVGSVSARLNQKTNHQIWRRLRNVRDHCTKHIYTC
DVPQVGEDNQNCVLRCVSAECYHHVYSQQPLEEGEIDHARMRAFMKCAHT
AELLDRKRQSSLQDPQA*
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spliced messenger RNA

>Ggra9982.t1 ID=Ggra9982.t1|Name=Ggra9982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000213_pilon:94991..95424- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTGTCCATCGGCTCTTGCGAAGCTTGTTGTCCTCGTCCTGCTTGT
TGGCTCTGTATCGGCGCGTCTTAATCAGAAGACCAACCATCAGATCTGGC
GTCGTTTGCGCAATGTTCGAGATCATTGTACCAAACACATATACACTTGC
GATGTTCCCCAAGTAGGCGAGGACAATCAGAACTGCGTTTTACGGTGCGT
TTCTGCCGAGTGTTATCATCATGTCTACTCTCAGCAGCCACTCGAAGAAG
GTGAAATCGACCATGCTCGCATGCGCGCATTCATGAAATGCGCTCATACT
GCGGAGCTGCTCGACAGGAAAAGGCAGTCATCTCTTCAAGACCCCCAAGC
ATAG
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protein sequence of Ggra9982.t1

>Ggra9982.t1 ID=Ggra9982.t1|Name=Ggra9982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MSCPSALAKLVVLVLLVGSVSARLNQKTNHQIWRRLRNVRDHCTKHIYTC
DVPQVGEDNQNCVLRCVSAECYHHVYSQQPLEEGEIDHARMRAFMKCAHT
AELLDRKRQSSLQDPQA*
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mRNA from alignment at tig00000213_pilon:94991..95424-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9982.t1 ID=Ggra9982.t1|Name=Ggra9982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp|location=Sequence derived from alignment at tig00000213_pilon:94991..95424- (Gracilaria gracilis GNS1m male)
ATGTCTTGTCCATCGGCTCTTGCGAAGCTTGTTGTCCTCGTCCTGCTTGT
TGGCTCTGTATCGGCGCGTCTTAATCAGAAGACCAACCATCAGATCTGGC
GTCGTTTGCGCAATGTTCGAGATCATTGTACCAAACACATATACACTTGC
GATGTTCCCCAAGTAGGCGAGGACAATCAGAACTGCGTTTTACGGTGCGT
TTCTGCCGAGTGTTATCATCATGTCTACTCTCAGCAGCCAGTAAGTGAAA
ACAATTTCCCGTTCGCTCATACCGTTCCAAACCCTCACTCATCGCCCGGC
ACAATCTTAATATCTCACAGCTCGAAGAAGGTGAAATCGACCATGCTCGC
ATGCGCGCATTCATGAAATGCGCTCATACTGCGGAGCTGCTCGACAGGAA
AAGGCAGTCATCTCTTCAAGACCCCCAAGCATAG
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Coding sequence (CDS) from alignment at tig00000213_pilon:94991..95424-

>Ggra9982.t1 ID=Ggra9982.t1|Name=Ggra9982.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00000213_pilon:94991..95424- (Gracilaria gracilis GNS1m male)
ATGTCTTGTCCATCGGCTCTTGCGAAGCTTGTTGTCCTCGTCCTGCTTGT
TGGCTCTGTATCGGCGCGTCTTAATCAGAAGACCAACCATCAGATCTGGC
GTCGTTTGCGCAATGTTCGAGATCATTGTACCAAACACATATACACTTGC
GATGTTCCCCAAGTAGGCGAGGACAATCAGAACTGCGTTTTACGGTGCGT
TTCTGCCGAGTGTTATCATCATGTCTACTCTCAGCAGCCACTCGAAGAAG
GTGAAATCGACCATGCTCGCATGCGCGCATTCATGAAATGCGCTCATACT
GCGGAGCTGCTCGACAGGAAAAGGCAGTCATCTCTTCAAGACCCCCAAGC
ATAG
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