Ggra9981.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9981.t1
Unique NameGgra9981.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:94113..94928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709398.1
PFAMsGot1
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016192,GO:0051179,GO:0051234
Evalue1.89e-10
EggNOG OGsCOG5102@1|root,KOG2887@2759|Eukaryota
Descriptionvesicle-mediated transport
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9981Ggra9981Gracilaria gracilis GNS1m malegenetig00000213_pilon 94113..94928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9981.t1Ggra9981.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 94113..94928 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9981.t1.start1Ggra9981.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 94113..94115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9981.t1.CDS1Ggra9981.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 94113..94572 +
Ggra9981.t1.CDS2Ggra9981.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 94665..94730 +
Ggra9981.t1.CDS3Ggra9981.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000213_pilon 94840..94928 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9981.t1.exon1Ggra9981.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 94113..94572 +
Ggra9981.t1.exon2Ggra9981.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 94665..94730 +
Ggra9981.t1.exon3Ggra9981.t1.exon3Gracilaria gracilis GNS1m maleexontig00000213_pilon 94840..94928 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9981.t1.intron1Ggra9981.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 94573..94664 +
Ggra9981.t1.intron2Ggra9981.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000213_pilon 94731..94839 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9981.t1.stop1Ggra9981.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 94926..94928 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9981.t1 ID=Ggra9981.t1|Name=Ggra9981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MGLLEGLNSLQGAPLPAPSTSNTSNVSNDPLSSFSASAKSLFGDLSNTLA
PSLETLNDTAKQSVSSVRRFISDEVPEDEEAPAQMTLSEEINTMFNLTMM
QRIALFVMIFGTGVLLIGMSFSFLPLIVVVPHKFAASFALGNVLAITSTW
VLVAFFGGKLRYLLVIVAIIAEVASLIWYALSYIPYGRHMISRLVGVMGI
SFGS*
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spliced messenger RNA

>Ggra9981.t1 ID=Ggra9981.t1|Name=Ggra9981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000213_pilon:94113..94928+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTTGCTGGAAGGTCTCAACTCTCTGCAAGGCGCGCCGTTGCCGGC
TCCTTCTACGTCGAATACGTCCAATGTCAGTAACGATCCTTTGTCGTCGT
TTTCGGCGTCGGCCAAGAGCTTGTTTGGCGACTTGTCAAACACGCTAGCG
CCTTCGTTAGAGACTCTAAATGACACTGCGAAACAGTCGGTCAGCTCTGT
TCGTCGCTTTATTTCGGATGAGGTGCCTGAGGATGAAGAGGCGCCGGCGC
AAATGACGCTTTCAGAAGAGATAAACACCATGTTTAATCTCACCATGATG
CAGAGAATCGCCTTGTTCGTCATGATTTTCGGCACCGGTGTGTTGCTTAT
TGGCATGTCATTCTCGTTCCTTCCGCTTATAGTAGTTGTTCCTCACAAGT
TCGCCGCCAGCTTTGCGCTGGGAAACGTCTTGGCCATCACGAGCACATGG
GTTCTTGTGGCCTTTTTCGGCGGAAAACTGCGCTATTTGTTGGTTATAGT
GGCCATCATCGCCGAGGTAGCATCACTGATATGGTATGCGCTAAGTTATA
TCCCGTATGGGAGACACATGATATCCAGACTTGTGGGAGTGATGGGCATC
TCGTTCGGATCATGA
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protein sequence of Ggra9981.t1

>Ggra9981.t1 ID=Ggra9981.t1|Name=Ggra9981.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MGLLEGLNSLQGAPLPAPSTSNTSNVSNDPLSSFSASAKSLFGDLSNTLA
PSLETLNDTAKQSVSSVRRFISDEVPEDEEAPAQMTLSEEINTMFNLTMM
QRIALFVMIFGTGVLLIGMSFSFLPLIVVVPHKFAASFALGNVLAITSTW
VLVAFFGGKLRYLLVIVAIIAEVASLIWYALSYIPYGRHMISRLVGVMGI
SFGS*
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mRNA from alignment at tig00000213_pilon:94113..94928+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9981.t1 ID=Ggra9981.t1|Name=Ggra9981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000213_pilon:94113..94928+ (Gracilaria gracilis GNS1m male)
ATGGGGTTGCTGGAAGGTCTCAACTCTCTGCAAGGCGCGCCGTTGCCGGC
TCCTTCTACGTCGAATACGTCCAATGTCAGTAACGATCCTTTGTCGTCGT
TTTCGGCGTCGGCCAAGAGCTTGTTTGGCGACTTGTCAAACACGCTAGCG
CCTTCGTTAGAGACTCTAAATGACACTGCGAAACAGTCGGTCAGCTCTGT
TCGTCGCTTTATTTCGGATGAGGTGCCTGAGGATGAAGAGGCGCCGGCGC
AAATGACGCTTTCAGAAGAGATAAACACCATGTTTAATCTCACCATGATG
CAGAGAATCGCCTTGTTCGTCATGATTTTCGGCACCGGTGTGTTGCTTAT
TGGCATGTCATTCTCGTTCCTTCCGCTTATAGTAGTTGTTCCTCACAAGT
TCGCCGCCAGCTTTGCGCTGGGAAACGTCTTGGCCATCACGAGCACATGG
GTTCTTGTGGGTCCTAAAGCTCAACTTCAGAACATGTTCAGTCCCGTGCG
AGCGGTAGCTTCGGCGGTATACTTGTTTTCGCTGGTGTTCACACTTTTGC
AGCCTTTTTCGGCGGAAAACTGCGCTATTTGTTGGTTATAGTGGCCATCA
TCGCCGAGGTAGCATCACGTAAGTTTGGTCCAACGCAAAGCACGAACAAG
TGCCTTTCCTTTTTTGCGCTAAGCGTGCTTCCTAGCGTACTAACTGCGTT
TTGTTGTTTCCCTTGTGCGACGTACAGTGATATGGTATGCGCTAAGTTAT
ATCCCGTATGGGAGACACATGATATCCAGACTTGTGGGAGTGATGGGCAT
CTCGTTCGGATCATGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:94113..94928+

>Ggra9981.t1 ID=Ggra9981.t1|Name=Ggra9981.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000213_pilon:94113..94928+ (Gracilaria gracilis GNS1m male)
ATGGGGTTGCTGGAAGGTCTCAACTCTCTGCAAGGCGCGCCGTTGCCGGC
TCCTTCTACGTCGAATACGTCCAATGTCAGTAACGATCCTTTGTCGTCGT
TTTCGGCGTCGGCCAAGAGCTTGTTTGGCGACTTGTCAAACACGCTAGCG
CCTTCGTTAGAGACTCTAAATGACACTGCGAAACAGTCGGTCAGCTCTGT
TCGTCGCTTTATTTCGGATGAGGTGCCTGAGGATGAAGAGGCGCCGGCGC
AAATGACGCTTTCAGAAGAGATAAACACCATGTTTAATCTCACCATGATG
CAGAGAATCGCCTTGTTCGTCATGATTTTCGGCACCGGTGTGTTGCTTAT
TGGCATGTCATTCTCGTTCCTTCCGCTTATAGTAGTTGTTCCTCACAAGT
TCGCCGCCAGCTTTGCGCTGGGAAACGTCTTGGCCATCACGAGCACATGG
GTTCTTGTGGCCTTTTTCGGCGGAAAACTGCGCTATTTGTTGGTTATAGT
GGCCATCATCGCCGAGGTAGCATCACTGATATGGTATGCGCTAAGTTATA
TCCCGTATGGGAGACACATGATATCCAGACTTGTGGGAGTGATGGGCATC
TCGTTCGGATCATGA
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