Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 3067.XP_002947992.1 |
| PFAMs | Sin_N,ubiquitin |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 8.39e-07 |
| EggNOG OGs | 2E3C4@1|root,2SAFQ@2759|Eukaryota |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9989.t1.stop1 | Ggra9989.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000213_pilon 118522..118524 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9989.t1.start1 | Ggra9989.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000213_pilon 119974..119976 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp
MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLS
TTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGT
PHTIHLVVSTPQQPRSSPQSTSPSNATNTSASTSDGAATGAQAPRLPHFA
YNGHFLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM
HAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNV
PHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRH
GIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGR
LYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQPQQPQQ
PQQPQQPQQPGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLP
AWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD* back to topspliced messenger RNA >Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA back to topprotein sequence of Ggra9989.t1 >Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=485bp
MSSPDSPVVGVNAANEQSAPKKSSDEADVVIKNPTDGPGTLPFSLSLSLS
TTVAELKNELSSKYPGSPPVRAQRLIYAGKLLRDGQKLREFLSPLQQPGT
PHTIHLVVSTPQQPRSSPQSTSPSNATNTSASTSDGAATGAQAPRLPHFA
YNGHFLGGQVPLPLQEALYAQHLQLVESLLARTLQNGPGAQPDPHMLAQM
HAADIAAAAAAGNTPDGGAQPYAVPPPLQPGNGVFPGMMRMHPPVHVQNV
PHMNMGAAQHTQTQQRAQQTQQQNAHPQPPHAQQPRRFNGFQLDVHFGRH
GIQNGMRNPVNAQNQPHVRQFVFQIEINWALMAKLMFLVYFFGHEGNSGR
LYGLIILALGIYMWQTGHLRWLRRLINTALPSPGRLIENLFPQQPQQPQQ
PQQPQQPQQPGTEQVASESPPARRNPYGYPALVLSFVYSFLYGFICSLLP
AWNPQPLPRIDQIAQNPERPQEEPNAAVNHNHLD* back to topmRNA from alignment at tig00000213_pilon:118522..119976- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA back to topCoding sequence (CDS) from alignment at tig00000213_pilon:118522..119976- >Ggra9989.t1 ID=Ggra9989.t1|Name=Ggra9989.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1455bp|location=Sequence derived from alignment at tig00000213_pilon:118522..119976- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCAGACTCTCCCGTTGTCGGCGTCAACGCAGCAAATGAACA
GTCCGCTCCAAAGAAGTCGAGTGACGAAGCTGATGTTGTTATAAAGAACC
CCACTGATGGACCTGGAACGCTACCATTTTCTCTCAGTTTGTCTCTATCT
ACTACCGTTGCTGAGCTCAAGAACGAGCTGAGTTCAAAGTATCCAGGTTC
GCCCCCTGTTCGAGCTCAGCGCCTGATATATGCTGGAAAGCTTTTGCGAG
ATGGTCAGAAGCTTCGTGAATTTCTTTCACCTCTTCAACAACCTGGAACA
CCGCATACCATTCATCTGGTGGTATCAACTCCCCAACAACCTCGTTCATC
CCCCCAGAGTACTTCGCCTTCAAACGCGACTAATACATCTGCATCTACTT
CCGATGGTGCGGCAACCGGCGCGCAGGCACCTCGGCTTCCCCACTTTGCC
TACAATGGACACTTTTTGGGAGGGCAGGTACCTCTGCCTCTTCAAGAAGC
CCTGTACGCCCAGCATTTGCAGCTTGTGGAATCCCTTCTCGCACGAACGT
TGCAAAACGGCCCCGGCGCGCAACCGGATCCTCATATGTTAGCCCAGATG
CATGCCGCGGATATTGCTGCGGCTGCGGCTGCTGGCAACACCCCCGACGG
TGGAGCGCAACCGTATGCTGTACCACCTCCGCTCCAACCTGGGAACGGCG
TGTTTCCGGGCATGATGCGCATGCACCCTCCAGTTCATGTCCAGAACGTA
CCGCATATGAATATGGGTGCTGCGCAGCACACTCAAACACAACAACGCGC
TCAACAAACTCAGCAGCAGAATGCACATCCCCAACCTCCTCATGCGCAAC
AGCCTAGGCGCTTTAATGGGTTTCAGTTGGATGTACATTTTGGAAGACAT
GGCATACAAAACGGTATGCGGAACCCAGTCAACGCTCAAAACCAGCCTCA
TGTGAGACAGTTCGTCTTCCAGATTGAGATTAACTGGGCTCTGATGGCAA
AACTGATGTTCCTAGTGTACTTCTTCGGCCATGAAGGAAACTCTGGTCGG
TTATATGGTCTCATCATTTTAGCATTGGGTATCTATATGTGGCAGACGGG
TCATCTCAGATGGTTACGTCGACTGATTAATACTGCTTTGCCAAGCCCGG
GAAGATTAATCGAGAACTTGTTTCCTCAGCAACCTCAGCAACCTCAGCAA
CCTCAGCAACCTCAGCAACCTCAGCAACCTGGTACAGAACAAGTCGCATC
GGAATCTCCACCAGCACGACGCAACCCGTATGGTTATCCGGCCCTGGTGC
TCTCGTTCGTATATTCGTTTCTTTATGGGTTTATTTGCTCTTTGTTGCCG
GCCTGGAATCCTCAGCCACTCCCGCGAATTGATCAGATAGCTCAAAACCC
TGAGCGCCCGCAAGAAGAGCCAAACGCCGCTGTAAATCACAACCATCTGG
ATTAA back to top
|