Ggra724.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra724.t1
Unique NameGgra724.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Homology
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BLAST of Ggra724.t1 vs. uniprot
Match: A0A3S2NRX5 (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2NRX5_CHISP)

HSP 1 Score: 72.0 bits (175), Expect = 2.410e-11
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 0 
Query:   42 IICVKCGLRFKDVAEMQKHDTETHLRVQTFECPVCHLTFRDASNANKHFRAVHEGRT------------KGTKCKLCDKPLSSPESLNRHMKNIHHNVRDIPCPKCGMKFKQGAHMRKHVETQH 153
            ++CV CG+RFKD + ++KH       V    C +C  TF +  + N H  + H G              + T C +C K  SS  +L +H+K IH+  +   C  C +KF+Q A + KH+  +H
Sbjct:  733 LVCVHCGVRFKDKSLIKKHIRNGECTVY-IACDLCSETFINMQDFNDHALSAHAGSFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKAIHNEEKPHYCQHCDVKFEQAADLNKHIYMEH 855
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BLAST of Ggra724.t1 vs. uniprot
Match: zinc finger protein 652 isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C94084 (zinc finger protein 652 isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C94084)

HSP 1 Score: 61.6 bits (148), Expect = 8.160e-8
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 0 
Query:   43 ICVKCGLRFKDVAEMQKHDTETHLRVQ--TFECPVCHLTFRDASNANKHFRAVHEGRTKGTKCKLCDKPLSSPESLNRHMKNIHHNVRDIPCPKCGMKFKQGA----HMRKHV 149
            IC  C   F+   E+ KH  E HL+     + CP+CH +F    +   H   +HE       C  C     + ESL RH+++ H N+R + C KC  +F Q      H+R HV
Sbjct:  348 ICTICSGSFESHTEVLKHKLECHLKPDQTNYFCPICHESFSSNRDLVDHIY-IHED-IHCLICVFCSNCFYTEESLRRHLRDAHVNLRKLKCQKCPKQFYQFQAILYHLRTHV 458
The following BLAST results are available for this feature:
BLAST of Ggra724.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3S2NRX52.410e-1131.45Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]
zinc finger protein 652 isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C940848.160e-832.74zinc finger protein 652 isoform X1 n=2 Tax=Copidos... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 42..65
e-value: 2.5
score: 17.1
coord: 130..153
e-value: 0.024
score: 23.8
coord: 71..94
e-value: 0.016
score: 24.4
coord: 101..124
e-value: 0.004
score: 26.4
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 71..94
e-value: 0.002
score: 18.4
coord: 102..124
e-value: 1.9E-4
score: 21.7
coord: 131..153
e-value: 0.0041
score: 17.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 44..65
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 132..153
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 103..125
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 73..94
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 130..153
score: 8.84976
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 71..99
score: 10.741022
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 101..129
score: 9.951263
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 98..156
e-value: 1.4E-11
score: 46.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 9..97
e-value: 7.3E-11
score: 43.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..176
NoneNo IPR availablePANTHERPTHR24406:SF12ZINC FINGER PROTEINcoord: 35..121
NoneNo IPR availablePANTHERPTHR24406:SF12ZINC FINGER PROTEINcoord: 44..168
NoneNo IPR availablePANTHERPTHR24406TRANSCRIPTIONAL REPRESSOR CTCFL-RELATEDcoord: 35..121
coord: 44..168
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 58..108
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 101..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000204_piloncontigtig00000204_pilon:16465..17357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra724.t1Ggra724.t1Gracilaria gracilis GNS1m malemRNAtig00000204_pilon 16465..17357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra724.t1 ID=Ggra724.t1|Name=Ggra724.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MASSPADDVSMSSEQDSSSPSLRSKFSEDSAQPKKQKKKGGIICVKCGLR
FKDVAEMQKHDTETHLRVQTFECPVCHLTFRDASNANKHFRAVHEGRTKG
TKCKLCDKPLSSPESLNRHMKNIHHNVRDIPCPKCGMKFKQGAHMRKHVE
TQHRELFDRHSRTRSSSRRDSNVEHSSRASSSRGFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf