Ggra724.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra724.t1
Unique NameGgra724.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000204_piloncontigtig00000204_pilon:16465..17357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34740.HMEL003966-PA
PFAMszf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl33208|Metazoa
KEGG koko:K09228
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007610,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009636,GO:0009987,GO:0010033,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0030534,GO:0032501,GO:0035556,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045471,GO:0046677,GO:0048149,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0097159,GO:0097305,GO:1901363,GO:1901700
Evalue1.2e-10
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3AJRV@33154|Opisthokonta,3C007@33208|Metazoa,3DGG0@33213|Bilateria,422BE@6656|Arthropoda,3SNWB@50557|Insecta,445DJ@7088|Lepidoptera
DescriptionZinc-finger associated domain (zf-AD)
COG categoryS
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra724Ggra724Gracilaria gracilis GNS1m malegenetig00000204_pilon 16465..17357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra724.t1Ggra724.t1Gracilaria gracilis GNS1m malepolypeptidetig00000204_pilon 16465..17357 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra724.t1.start1Ggra724.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000204_pilon 16465..16467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra724.t1.CDS1Ggra724.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000204_pilon 16465..16641 +
Ggra724.t1.CDS2Ggra724.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000204_pilon 16757..16845 +
Ggra724.t1.CDS3Ggra724.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000204_pilon 16971..17008 +
Ggra724.t1.CDS4Ggra724.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000204_pilon 17101..17357 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra724.t1.exon1Ggra724.t1.exon1Gracilaria gracilis GNS1m maleexontig00000204_pilon 16465..16641 +
Ggra724.t1.exon2Ggra724.t1.exon2Gracilaria gracilis GNS1m maleexontig00000204_pilon 16757..16845 +
Ggra724.t1.exon3Ggra724.t1.exon3Gracilaria gracilis GNS1m maleexontig00000204_pilon 16971..17008 +
Ggra724.t1.exon4Ggra724.t1.exon4Gracilaria gracilis GNS1m maleexontig00000204_pilon 17101..17357 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra724.t1.intron1Ggra724.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000204_pilon 16642..16756 +
Ggra724.t1.intron2Ggra724.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000204_pilon 16846..16970 +
Ggra724.t1.intron3Ggra724.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000204_pilon 17009..17100 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra724.t1.stop1Ggra724.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000204_pilon 17355..17357 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra724.t1 ID=Ggra724.t1|Name=Ggra724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=187bp
MASSPADDVSMSSEQDSSSPSLRSKFSEDSAQPKKQKKKGGIICVKCGLR
FKDVAEMQKHDTETHLRVQTFECPVCHLTFRDASNANKHFRAVHEGRTKG
TKCKLCDKPLSSPESLNRHMKNIHHNVRDIPCPKCGMKFKQGAHMRKHVE
TQHRELFDRHSRTRSSSRRDSNVEHSSRASSSRGFR*
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spliced messenger RNA

>Ggra724.t1 ID=Ggra724.t1|Name=Ggra724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000204_pilon:16465..17357+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAAGCCCAGCCGATGATGTGAGCATGAGCTCCGAGCAAGATTC
TTCGTCGCCATCATTGCGTTCCAAATTCTCCGAAGACAGTGCGCAACCCA
AGAAGCAAAAAAAAAAGGGGGGGATAATATGCGTCAAGTGCGGGCTGAGG
TTCAAGGATGTCGCAGAAATGCAAAAGCATGATACTGAGACACATTTGAG
AGTTCAGACTTTTGAATGTCCAGTATGTCATTTGACGTTCCGAGACGCAT
CAAACGCCAACAAACATTTCAGAGCAGTGCACGAGGGTAGAACAAAAGGT
ACAAAGTGTAAATTGTGTGATAAACCGCTTTCGAGTCCAGAAAGTCTGAA
TAGACACATGAAGAATATTCATCACAACGTTCGAGATATTCCGTGTCCCA
AATGTGGGATGAAGTTTAAGCAAGGGGCCCATATGAGGAAGCACGTTGAA
ACTCAACATCGTGAACTTTTCGACCGTCATTCGAGAACTAGGTCTTCTTC
TCGGCGGGATTCGAATGTGGAACATTCAAGTCGTGCATCTTCCTCTCGCG
GCTTCCGTTGA
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protein sequence of Ggra724.t1

>Ggra724.t1 ID=Ggra724.t1|Name=Ggra724.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MASSPADDVSMSSEQDSSSPSLRSKFSEDSAQPKKQKKKGGIICVKCGLR
FKDVAEMQKHDTETHLRVQTFECPVCHLTFRDASNANKHFRAVHEGRTKG
TKCKLCDKPLSSPESLNRHMKNIHHNVRDIPCPKCGMKFKQGAHMRKHVE
TQHRELFDRHSRTRSSSRRDSNVEHSSRASSSRGFR*
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mRNA from alignment at tig00000204_pilon:16465..17357+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra724.t1 ID=Ggra724.t1|Name=Ggra724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=893bp|location=Sequence derived from alignment at tig00000204_pilon:16465..17357+ (Gracilaria gracilis GNS1m male)
ATGGCTTCAAGCCCAGCCGATGATGTGAGCATGAGCTCCGAGCAAGATTC
TTCGTCGCCATCATTGCGTTCCAAATTCTCCGAAGACAGTGCGCAACCCA
AGAAGCAAAAAAAAAAGGGGGGGATAATATGCGTCAAGTGCGGGCTGAGG
TTCAAGGATGTCGCAGAAATGCAAAAGGTAAGCTTTGGAAATTACTTCTA
GTGTCCGTTCTTGTCTTCAACGAAGCTGACAATGAAACCCAATGAAAATG
GAATGTTCTGCTCGCAACAAATCGCATTCCAACCACCCACAGCATGATAC
TGAGACACATTTGAGAGTTCAGACTTTTGAATGTCCAGTATGTCATTTGA
CGTTCCGAGACGCATCAAACGCCAACAAACAGTAAGTAGAACGTTATGGT
ATAGTTGCTACACAAAAGGCTTAGTATAGGGGGAGCCAAGTGTCGATCTA
ACCTCAGATCCTTTTTCGTCCTTTGTGTTGTCCACTTTCTACTACGGAAA
ACGCAGTTTCAGAGCAGTGCACGAGGGTAGAACAAAAGGTACAAGTAAGT
GATATCAGTATATACAAGCCCTGCACTAAAGTCAACAGCTACTGACTGAA
AGATGTGCAAAACTTCTTCTTTGTCTTGAAATGCAGAGTGTAAATTGTGT
GATAAACCGCTTTCGAGTCCAGAAAGTCTGAATAGACACATGAAGAATAT
TCATCACAACGTTCGAGATATTCCGTGTCCCAAATGTGGGATGAAGTTTA
AGCAAGGGGCCCATATGAGGAAGCACGTTGAAACTCAACATCGTGAACTT
TTCGACCGTCATTCGAGAACTAGGTCTTCTTCTCGGCGGGATTCGAATGT
GGAACATTCAAGTCGTGCATCTTCCTCTCGCGGCTTCCGTTGA
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Coding sequence (CDS) from alignment at tig00000204_pilon:16465..17357+

>Ggra724.t1 ID=Ggra724.t1|Name=Ggra724.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000204_pilon:16465..17357+ (Gracilaria gracilis GNS1m male)
ATGGCTTCAAGCCCAGCCGATGATGTGAGCATGAGCTCCGAGCAAGATTC
TTCGTCGCCATCATTGCGTTCCAAATTCTCCGAAGACAGTGCGCAACCCA
AGAAGCAAAAAAAAAAGGGGGGGATAATATGCGTCAAGTGCGGGCTGAGG
TTCAAGGATGTCGCAGAAATGCAAAAGCATGATACTGAGACACATTTGAG
AGTTCAGACTTTTGAATGTCCAGTATGTCATTTGACGTTCCGAGACGCAT
CAAACGCCAACAAACATTTCAGAGCAGTGCACGAGGGTAGAACAAAAGGT
ACAAAGTGTAAATTGTGTGATAAACCGCTTTCGAGTCCAGAAAGTCTGAA
TAGACACATGAAGAATATTCATCACAACGTTCGAGATATTCCGTGTCCCA
AATGTGGGATGAAGTTTAAGCAAGGGGCCCATATGAGGAAGCACGTTGAA
ACTCAACATCGTGAACTTTTCGACCGTCATTCGAGAACTAGGTCTTCTTC
TCGGCGGGATTCGAATGTGGAACATTCAAGTCGTGCATCTTCCTCTCGCG
GCTTCCGTTGA
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