Ggra10802.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10802.t1
Unique NameGgra10802.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Homology
BLAST of Ggra10802.t1 vs. uniprot
Match: R7Q5C2 (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 139 bits (350), Expect = 1.390e-36
Identity = 78/206 (37.86%), Postives = 125/206 (60.68%), Query Frame = 0
Query:   49 LVAENSLAASIGVPSLLQLQHKLLDNDGCPARMCFAMDGSESVSVQEYEVQKELVMLIATMVSLHNKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLGNSKFSFLTAGLGACILRVQAGDSLYGN-ILVLGEGHENFARNFLPSVTSKLRTEQVFALGIGHDIDDEIFREITRGNSSNIFRVDSYDVVKDVVDVVVSSICSI 253
            +V +N +AAS+G  ++  LQ ++  +  C   +CFA+DGS S+S +EY+VQK+LV LIA + +  N A FSAVQYG+ +  ++ +T D   F+  V NS L  +  +FLTAGLG CI +V       G  ++VLG+G +N+  + L  V     +  +FA+GIG+ +D +   EIT G  ++++   +Y  V  VV  +V ++CS+
Sbjct:   50 IVQKNPVAASLGAKTIDSLQTEVCRDGSCDISLCFALDGSGSISAEEYQVQKDLVKLIAILAAPAN-ATFSAVQYGLANEFISVSTSDPFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNENPKAGGKKVVVLGDGRDNYMESSLALVLKSAESVDIFAVGIGNSLDTQKLLEITGGQKNHVYTASNYADVGQVVVDLVRALCSV 254          
BLAST of Ggra10802.t1 vs. uniprot
Match: R7Q3A9 (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 109 bits (272), Expect = 3.140e-25
Identity = 70/204 (34.31%), Postives = 115/204 (56.37%), Query Frame = 0
Query:   49 LVAENSLAASIGVPSLLQLQHKLLDNDGCPARMCFAMDGSESVSVQEYEVQKELVMLIATMVSLHNKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLGNSKFSFLTAGLGACILRVQAGDSLYGN-ILVLGEGHENFARNFLPSVTSKLRTEQVFALGIGHDIDDEIFREITRGNSSNIFRVDSYDVVKDVVDVVVSSIC 251
            L+  N LA S+GV  +++L  ++     C  R+CFA+DGS S+S  +++VQ++LV L+A+ V+    A FSAVQYG+ +  ++  T +  +F   V +S    +  +F+ +GLG CI  ++      G  IL+LG+G  NF    LP V S L   Q+ A+GIG   +     +IT G+ S +  V+ Y  ++ +V  +V  +C
Sbjct:   37 LLRGNRLAQSVGVNGIVRLFKEVNRGRRCNMRLCFALDGSGSISPVQFKVQQDLVKLLAS-VAREGGATFSAVQYGLSNTAISTPTGNAPKFRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSNFFTLALPLVLSTLNDIQISAVGIGFPRNSRTLLDIT-GSRSRLCAVNRYSDIRRIVFKLVRGLC 238          
BLAST of Ggra10802.t1 vs. uniprot
Match: A0A2V3IQR5 (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 95.1 bits (235), Expect = 7.340e-20
Identity = 62/217 (28.57%), Postives = 106/217 (48.85%), Query Frame = 0
Query:   45 RTDELVAENSLAASIGVPSLLQLQHKLLDNDGCPARMCFAMDGSESVSVQEYEVQKELVMLIATMVSLHNKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLGNSKFSFLTAGLGACILRVQAGDSLYGNILVLGEGHENFARNFLP----SVTSKLRTEQ---VFALGIGHDIDDEIFREITRGNSSNIFRVDSYDVVKDVVDVVVSSICSIE 254
            R DEL  +  L       + +QL  ++ +   C   +CFA+DGS S+ V E++++K+   L+A +V+   +A F+AVQYG+    ++  T+D   FL  V  +   N+  +F+  GL  CI +         +I++LG+G  NF     P    S+           + A+G+G D DD +   I  G   N+F V  +  V  V+  +V  +C ++
Sbjct:   27 RIDEL--DTPLTKGTANEAEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIA-GGEENVFNVGQWLEVTTVLAELVGEVCGLD 240          
BLAST of Ggra10802.t1 vs. uniprot
Match: A0A2V3ISA4 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 89.7 bits (221), Expect = 7.020e-18
Identity = 55/189 (29.10%), Postives = 101/189 (53.44%), Query Frame = 0
Query:   70 KLLDNDGCPARMCFAMDGSESVSVQEYEVQKELVMLIATMVSLHNKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLGNSKFSFLTAGLGACILRVQAGDSLYGNILVLGEGHENFARNFLP----SVTSKLRTE---QVFALGIGHDIDDEIFREITRGNSSNIFRVDSYDVVKDVVDVVVSSIC 251
            ++++  GC   +CFA+DGS S++  E+++Q + V LI  +VSL  ++ +SA+QYG+    ++  T+D + FL  V+ +    S  +F+  G+G C+ + +        I++LG+G   F     P    S+ ++   E    + A+G+  D   E+  EIT G+   +F V  +  V DV+  +V  +C
Sbjct:   47 EIVEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTT-ELLEEIT-GDPDRVFSVADWMSVVDVLADLVEQVC 233          
BLAST of Ggra10802.t1 vs. uniprot
Match: A0A2V3ID60 (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 69.7 bits (169), Expect = 1.170e-10
Identity = 51/203 (25.12%), Postives = 98/203 (48.28%), Query Frame = 0
Query:   49 LVAENSLAASIGVPSLLQLQHKLLDNDGCPARMCFAMDGSESVSVQEYEVQKELVMLIATMVSLH-NKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLGNSKFSFLTAGLGACILRVQAGDSLYGNILVLGEGHENFARNFLPSVTSKLR----TEQVFALGIGHDIDDEIFREITRGNSSNIFRVDSY-DVVKDVVDV 245
            LV      +++ +   LQ   ++++ +GC   +CFA+DGS SV+  +YE+QK+ V L++ ++      + FSAVQYG     ++  T+ I  F   V  S +   + S +  G+  C  ++         I+V G+G E  ++    S+ +  +      ++  +G+G   +  + + I       +F +D Y D +  VVD+
Sbjct:   16 LVTAIPFESNMNMRMRLQGVRRMVERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPVKIIVFGDGRET-SKTDAVSIAASFKDFHPNGRLSTVGVGFP-NTVLLKTIAEAGGGRLFEIDEYIDALDLVVDL 216          
The following BLAST results are available for this feature:
BLAST of Ggra10802.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
R7Q5C21.390e-3637.86VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
R7Q3A93.140e-2534.31VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3IQR57.340e-2028.57Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3ISA47.020e-1829.10VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ID601.170e-1025.12Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 78..251
e-value: 9.5E-7
score: 38.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 82..244
e-value: 1.6E-6
score: 28.5
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 80..246
score: 10.693128
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 74..256
e-value: 1.3E-11
score: 46.5
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 77..253
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..257
NoneNo IPR availableCDDcd00198vWFAcoord: 79..231
e-value: 1.45025E-6
score: 45.2494

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000198_piloncontigtig00000198_pilon:53059..53832 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10802.t1Ggra10802.t1Gracilaria gracilis GNS1m malemRNAtig00000198_pilon 53059..53832 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10802.t1 ID=Ggra10802.t1|Name=Ggra10802.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MFIVANMFDRRSMLTVAVLFLTLSVGVSVEFSAENSKYEGWIRSRTDELV
AENSLAASIGVPSLLQLQHKLLDNDGCPARMCFAMDGSESVSVQEYEVQK
ELVMLIATMVSLHNKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLG
NSKFSFLTAGLGACILRVQAGDSLYGNILVLGEGHENFARNFLPSVTSKL
RTEQVFALGIGHDIDDEIFREITRGNSSNIFRVDSYDVVKDVVDVVVSSI
CSIERDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf