Ggra9958.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9958.t1
Unique NameGgra9958.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length322
Homology
BLAST of Ggra9958.t1 vs. uniprot
Match: A0A2V3ILS4 (ATP-dependent DNA helicase tlh2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILS4_9FLOR)

HSP 1 Score: 142 bits (357), Expect = 6.880e-34
Identity = 103/339 (30.38%), Postives = 169/339 (49.85%), Query Frame = 0
Query:    8 DKLKSTFVLIFSVDNILKDRKLQLPEAHPL-------GSSDLSDNKFFSFITENVRSYLTTVPEISLDIPPSILTWCNVRSKGDRQQ--PFRTVLAKACWQYSSEVVRFVTFLCRASQSCPDY----IYTSTQEALQLYMDYC---------LSHPSSEDPQKDWEMSKRRQFLHNLLRVTLLRSWPSCHSNRMMAVKTFFCTRCVKQDGGEKYRFHEPWEVTKCLAALQYAISCCAIVEVHLAN---SEQDREDSVAHEEPVAEYNV----SKVRDSVMIDRNNVASFVRNILDIAMSFLYQHDINVSFESCPQHSNCGIVRDIHVSMRVIGDKVSNA 317
            +++KSTF+++   DN+L+ R + + EA+ L       G S+  ++     + ++   YLT V  I++DIP  +L W N+R   DR Q      V     ++Y+  + R V F+ ++    P      +++S  + +++  +           +S    E        ++R +    L++  LL S     S   +AVK F C   V    G   RF E WE+T  LAA+QY +S  A  E   A    +E D+  +    + V   +       +R+ V +DRN+ ASFVR+ILD+AMS + + D++VSFE+C  H NCGIV+++HVS+  IG  V  A
Sbjct:  356 NRMKSTFIVLSRFDNVLQKRGITMEEANTLTSLQLDSGGSNQIEDAVVGLVLQDSLQYLTQVASITVDIPFCVLRWLNIR---DRSQGGALTVVEQNTAYKYAKLLARMVMFVKKSRDRVPSLCSAKVFSSGSDYMKVIRELASDVVARGKKISGIQYERVYYGHRDAERYETFRRLVKELLLVSQSIFASEDKLAVKNFVCCSSVLHKSGV-IRFAEAWEITGTLAAIQYCVSVAAAHEYDHAKRLKNEGDQNGTCTEGKEVMCSSTFDEEDLIRNYVSLDRNSSASFVRHILDLAMSLVAKEDLDVSFENCTSHVNCGIVKEVHVSLGDIGLLVKRA 690          
BLAST of Ggra9958.t1 vs. uniprot
Match: A0A2V3IQB5 (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQB5_9FLOR)

HSP 1 Score: 120 bits (300), Expect = 1.680e-26
Identity = 98/324 (30.25%), Postives = 154/324 (47.53%), Query Frame = 0
Query:    2 NGIEG-DDKLKSTFVLIFSVDNILKDRKLQLPEAHPLGSSDLSDNKFFSFITENVRSYLTTVPEISLDIPPSILTWCNVRSKGDRQQPFRTVLAKACWQYSSEVVRFVTFLCRASQSCPDYIYTSTQEALQLYMDYCLSHPSSEDPQKDWEMSKRRQFLHNLLRVTLLRSWPSCHSNRMMAVKTFFCTRCVKQDGGEKYRFHEPWEVTKCLAALQYAISCCAIVEVHLAN---SEQDREDSVAHEEPVAEYNV----SKVRDSVMIDRNNVASFVRNILDIAMSFLYQHDINVSFESCPQHSNCGIVRDIHVSMRVIGDKVSNA 317
            NG +G D+ +KSTF+ +   DN+L+ R + + EA+ L S  +    + +    +    LT V + +      +L    +  K  R +      AK  +   S+ ++ +  L  A  +  + I     E  ++Y D+C               ++R +    L++  LL       S   +AVK F C   V    G   RF E WE+T  LAA+QY +S  A  E   A    +E D   +   E  V   +       +R+ V +DRN+ ASFVR+ILD+AMS + + D++VSFE+C  H NCGIV+++HVS+  IG  V  A
Sbjct:  349 NGTKGLDNPMKSTFIALSRFDNVLQKRGITMEEANTLTSLQIDSGGWLNIRDRSQGGALTVVEQNTAYKYAKVLARMVMFVKKSRDRVPSLGSAKV-FSSGSDYMKVIRELPSAVVARGEKISVIQYE--RVYYDHC--------------DAERYETFRRLVKELLLVPQSIFASEDKLAVKNFVCCSSVHHKSGV-IRFSEAWEITGTLAAIQYCVSVAAAHEYDHAKRLKNEGDHNGTCTEENEVMCSSTFDEEDLIRNYVSLDRNSSASFVRHILDLAMSLVAKEDLDVSFENCTSHVNCGIVKEVHVSLGDIGLLVKRA 654          
BLAST of Ggra9958.t1 vs. uniprot
Match: A0A2V3ID57 (C2H2-type domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID57_9FLOR)

HSP 1 Score: 104 bits (259), Expect = 3.880e-21
Identity = 87/324 (26.85%), Postives = 150/324 (46.30%), Query Frame = 0
Query:    7 DDKLKSTFVLIFSVDNILKDRKLQLPEAHPLGSSDL----SDNKFFSFITENVRSYLTTVPEISLDIPPSILTWCNVRSKGDRQQPFRTVLAKACWQYSSEVVRFVTFLCRASQSCPDYIYTSTQEALQLYMDYCLSHPSSEDPQKDWEMSKRRQFLHNLLRVTLLRSW-PSCHSNRMMAVKTFFCTRCVKQDGGEK----YRFHEPWEVTKCLAALQYAISCCAIVEVHLANSE--QDREDSVAHEEPVAEYNVSKVRDSVMIDRNNVASFVRNILDIAMSFLYQHDINVSFESCPQHSNCGIVRDIHVSMRVIGDKVSNALT 319
            D+K ++ F+    +D  L+  ++ + +A  L  + L     +N  FS ++ N+  Y+   P I   +PP  L   N R+       F+TV      +Y+ +V R + F+  A+    D +  S  +         ++ P+         M K    LH  L+  LL+S  P   ++R++      C   +K    E     Y++     +T  LAALQYA++  AI E+H       Q+ E +V+         ++ +  S+ +  N   SF+RN L++AMS   +  +NVSF  C  H+NCGIV+D+H+S+  +G+ V    T
Sbjct:  298 DEKCRNYFIQSTKLDLALESLRISMEDAVFLSGAKLVEARGNNPDFSKLSANIVQYMQRTPSIMSTLPPFFLHSLNQRTNF----AFKTVRLDTLQRYALDVARLLFFVANANTRSHDLVPKSVAKMTV----EVITIPN---------MMKN---LHASLKACLLQSLQPYTPTSRLLVRNFVACASVLKFTDCELDKPIYKYAAAEAITHLLAALQYAVAASAIHELHTLGQSGVQNTETNVSE--------MASLTTSLDMQANTAFSFIRNTLNVAMSIARKESLNVSFLPCTIHTNCGIVKDVHLSLSQVGNLVQELNT 593          
The following BLAST results are available for this feature:
BLAST of Ggra9958.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ILS46.880e-3430.38ATP-dependent DNA helicase tlh2 n=1 Tax=Gracilario... [more]
A0A2V3IQB51.680e-2630.25C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3ID573.880e-2126.85C2H2-type domain-containing protein n=2 Tax=Gracil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:387742..388707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9958.t1Ggra9958.t1Gracilaria gracilis GNS1m malemRNAtig00000887_pilon 387742..388707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9958.t1 ID=Ggra9958.t1|Name=Ggra9958.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=322bp
MNGIEGDDKLKSTFVLIFSVDNILKDRKLQLPEAHPLGSSDLSDNKFFSF
ITENVRSYLTTVPEISLDIPPSILTWCNVRSKGDRQQPFRTVLAKACWQY
SSEVVRFVTFLCRASQSCPDYIYTSTQEALQLYMDYCLSHPSSEDPQKDW
EMSKRRQFLHNLLRVTLLRSWPSCHSNRMMAVKTFFCTRCVKQDGGEKYR
FHEPWEVTKCLAALQYAISCCAIVEVHLANSEQDREDSVAHEEPVAEYNV
SKVRDSVMIDRNNVASFVRNILDIAMSFLYQHDINVSFESCPQHSNCGIV
RDIHVSMRVIGDKVSNALTHK*
back to top