Ggra9958.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9958.t1
Unique NameGgra9958.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:387742..388707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9958Ggra9958Gracilaria gracilis GNS1m malegenetig00000887_pilon 387742..388707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9958.t1.stop1Ggra9958.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 387742..387744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9958.t1.CDS1Ggra9958.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 387742..388707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9958.t1.exon1Ggra9958.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 387742..388707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9958.t1.start1Ggra9958.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 388705..388707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9958.t1Ggra9958.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 387742..388707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9958.t1 ID=Ggra9958.t1|Name=Ggra9958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=322bp
MNGIEGDDKLKSTFVLIFSVDNILKDRKLQLPEAHPLGSSDLSDNKFFSF
ITENVRSYLTTVPEISLDIPPSILTWCNVRSKGDRQQPFRTVLAKACWQY
SSEVVRFVTFLCRASQSCPDYIYTSTQEALQLYMDYCLSHPSSEDPQKDW
EMSKRRQFLHNLLRVTLLRSWPSCHSNRMMAVKTFFCTRCVKQDGGEKYR
FHEPWEVTKCLAALQYAISCCAIVEVHLANSEQDREDSVAHEEPVAEYNV
SKVRDSVMIDRNNVASFVRNILDIAMSFLYQHDINVSFESCPQHSNCGIV
RDIHVSMRVIGDKVSNALTHK*
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spliced messenger RNA

>Ggra9958.t1 ID=Ggra9958.t1|Name=Ggra9958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000887_pilon:387742..388707- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGTATTGAAGGAGATGACAAGCTGAAATCCACATTTGTTTTAAT
CTTCAGCGTTGATAACATTCTAAAAGATCGCAAGCTTCAACTTCCAGAAG
CCCATCCGCTCGGATCCAGTGACTTGTCTGACAACAAGTTCTTCTCATTC
ATCACCGAAAACGTTCGCTCATATCTAACGACAGTCCCTGAAATCAGTCT
GGATATCCCCCCCTCCATTCTAACATGGTGCAATGTAAGATCAAAGGGCG
ATCGCCAGCAGCCGTTTAGAACAGTTTTGGCGAAGGCTTGTTGGCAGTAC
TCGTCAGAAGTAGTCCGTTTTGTGACGTTTCTATGCCGAGCAAGTCAATC
ATGCCCAGATTACATATATACCAGCACTCAAGAGGCTCTCCAACTATATA
TGGACTATTGTTTGTCTCATCCAAGTTCGGAAGACCCACAGAAAGATTGG
GAAATGTCAAAGAGAAGGCAATTTTTGCATAATCTGCTAAGGGTCACTCT
TCTGCGATCCTGGCCCTCGTGTCACTCTAATCGTATGATGGCTGTGAAGA
CCTTCTTCTGTACGAGGTGTGTGAAACAGGATGGAGGGGAAAAGTATAGG
TTTCATGAACCATGGGAAGTAACAAAATGCCTTGCAGCACTTCAGTATGC
AATTAGTTGCTGCGCAATAGTTGAAGTTCACCTGGCCAATTCAGAGCAAG
ATCGTGAAGATTCCGTTGCACATGAAGAACCTGTTGCTGAGTATAATGTC
TCGAAAGTCCGTGACTCCGTCATGATCGATCGCAATAATGTGGCCTCATT
TGTGAGGAATATTCTGGATATTGCAATGTCCTTCTTGTACCAACACGACA
TTAACGTCTCCTTCGAATCTTGTCCGCAACATTCAAATTGTGGAATTGTG
CGGGACATTCACGTATCAATGCGTGTTATCGGTGATAAGGTATCAAATGC
TCTCACACACAAATAG
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protein sequence of Ggra9958.t1

>Ggra9958.t1 ID=Ggra9958.t1|Name=Ggra9958.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=322bp
MNGIEGDDKLKSTFVLIFSVDNILKDRKLQLPEAHPLGSSDLSDNKFFSF
ITENVRSYLTTVPEISLDIPPSILTWCNVRSKGDRQQPFRTVLAKACWQY
SSEVVRFVTFLCRASQSCPDYIYTSTQEALQLYMDYCLSHPSSEDPQKDW
EMSKRRQFLHNLLRVTLLRSWPSCHSNRMMAVKTFFCTRCVKQDGGEKYR
FHEPWEVTKCLAALQYAISCCAIVEVHLANSEQDREDSVAHEEPVAEYNV
SKVRDSVMIDRNNVASFVRNILDIAMSFLYQHDINVSFESCPQHSNCGIV
RDIHVSMRVIGDKVSNALTHK*
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mRNA from alignment at tig00000887_pilon:387742..388707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9958.t1 ID=Ggra9958.t1|Name=Ggra9958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000887_pilon:387742..388707- (Gracilaria gracilis GNS1m male)
ATGAATGGTATTGAAGGAGATGACAAGCTGAAATCCACATTTGTTTTAAT
CTTCAGCGTTGATAACATTCTAAAAGATCGCAAGCTTCAACTTCCAGAAG
CCCATCCGCTCGGATCCAGTGACTTGTCTGACAACAAGTTCTTCTCATTC
ATCACCGAAAACGTTCGCTCATATCTAACGACAGTCCCTGAAATCAGTCT
GGATATCCCCCCCTCCATTCTAACATGGTGCAATGTAAGATCAAAGGGCG
ATCGCCAGCAGCCGTTTAGAACAGTTTTGGCGAAGGCTTGTTGGCAGTAC
TCGTCAGAAGTAGTCCGTTTTGTGACGTTTCTATGCCGAGCAAGTCAATC
ATGCCCAGATTACATATATACCAGCACTCAAGAGGCTCTCCAACTATATA
TGGACTATTGTTTGTCTCATCCAAGTTCGGAAGACCCACAGAAAGATTGG
GAAATGTCAAAGAGAAGGCAATTTTTGCATAATCTGCTAAGGGTCACTCT
TCTGCGATCCTGGCCCTCGTGTCACTCTAATCGTATGATGGCTGTGAAGA
CCTTCTTCTGTACGAGGTGTGTGAAACAGGATGGAGGGGAAAAGTATAGG
TTTCATGAACCATGGGAAGTAACAAAATGCCTTGCAGCACTTCAGTATGC
AATTAGTTGCTGCGCAATAGTTGAAGTTCACCTGGCCAATTCAGAGCAAG
ATCGTGAAGATTCCGTTGCACATGAAGAACCTGTTGCTGAGTATAATGTC
TCGAAAGTCCGTGACTCCGTCATGATCGATCGCAATAATGTGGCCTCATT
TGTGAGGAATATTCTGGATATTGCAATGTCCTTCTTGTACCAACACGACA
TTAACGTCTCCTTCGAATCTTGTCCGCAACATTCAAATTGTGGAATTGTG
CGGGACATTCACGTATCAATGCGTGTTATCGGTGATAAGGTATCAAATGC
TCTCACACACAAATAG
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Coding sequence (CDS) from alignment at tig00000887_pilon:387742..388707-

>Ggra9958.t1 ID=Ggra9958.t1|Name=Ggra9958.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=966bp|location=Sequence derived from alignment at tig00000887_pilon:387742..388707- (Gracilaria gracilis GNS1m male)
ATGAATGGTATTGAAGGAGATGACAAGCTGAAATCCACATTTGTTTTAAT
CTTCAGCGTTGATAACATTCTAAAAGATCGCAAGCTTCAACTTCCAGAAG
CCCATCCGCTCGGATCCAGTGACTTGTCTGACAACAAGTTCTTCTCATTC
ATCACCGAAAACGTTCGCTCATATCTAACGACAGTCCCTGAAATCAGTCT
GGATATCCCCCCCTCCATTCTAACATGGTGCAATGTAAGATCAAAGGGCG
ATCGCCAGCAGCCGTTTAGAACAGTTTTGGCGAAGGCTTGTTGGCAGTAC
TCGTCAGAAGTAGTCCGTTTTGTGACGTTTCTATGCCGAGCAAGTCAATC
ATGCCCAGATTACATATATACCAGCACTCAAGAGGCTCTCCAACTATATA
TGGACTATTGTTTGTCTCATCCAAGTTCGGAAGACCCACAGAAAGATTGG
GAAATGTCAAAGAGAAGGCAATTTTTGCATAATCTGCTAAGGGTCACTCT
TCTGCGATCCTGGCCCTCGTGTCACTCTAATCGTATGATGGCTGTGAAGA
CCTTCTTCTGTACGAGGTGTGTGAAACAGGATGGAGGGGAAAAGTATAGG
TTTCATGAACCATGGGAAGTAACAAAATGCCTTGCAGCACTTCAGTATGC
AATTAGTTGCTGCGCAATAGTTGAAGTTCACCTGGCCAATTCAGAGCAAG
ATCGTGAAGATTCCGTTGCACATGAAGAACCTGTTGCTGAGTATAATGTC
TCGAAAGTCCGTGACTCCGTCATGATCGATCGCAATAATGTGGCCTCATT
TGTGAGGAATATTCTGGATATTGCAATGTCCTTCTTGTACCAACACGACA
TTAACGTCTCCTTCGAATCTTGTCCGCAACATTCAAATTGTGGAATTGTG
CGGGACATTCACGTATCAATGCGTGTTATCGGTGATAAGGTATCAAATGC
TCTCACACACAAATAG
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