Ggra9908.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9908.t1
Unique NameGgra9908.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Homology
BLAST of Ggra9908.t1 vs. uniprot
Match: A0A2V3J1X8 (PAPA-1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1X8_9FLOR)

HSP 1 Score: 385 bits (988), Expect = 2.110e-128
Identity = 288/408 (70.59%), Postives = 319/408 (78.19%), Query Frame = 0
Query:    5 ESSSSDEINKLPSVPRVRRSSGAKPPRP--SRSGVKN-KRDSPVAEKRPVRQSTRRRVTKRILREDSAHSE-DDGNDSYIPLRRTSRRSQKTRXXXXXXXXXXXXXXXXXXATPDNDNKDLLYGKDDQEVSVDMLDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------TIRESSSDSRDVDQGDENXXXXXXXXXXXXXXXSGEGEGSEIITGQKDILAQLEEEVNKEDSEDFKSESSEEPKPKRSRRLTSRQRALQGESVKLEYSKLDSPKAKKKEVQEDWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFALATEARAAEVEVRLTQNEMREGCMRYVSNQEGSTLSIPKDAVVPPYLSKSLKAVYPPMCKRDPKTGKRV 398
            ES SSDE+NKLP+VPRVRRSSGAKPP P  SRS  K+ KR+S +AEKRP+RQS RRR++KR  REDS +SE +D ++S++ +RRTSRR QKTR    XXXXXXXX       T D D+ +    K++ E S  + D+ XXXXXXXXXXXXXXXXXXXXXXXX               TIRESSSD R        XXXXXXXXXX     S E EG EII GQ DILAQLEEE N  DSEDFKSESSEE KP +SRRLTSRQRALQGE+VKLEYSKL+SPK KKKEVQE+WDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKF LATEARAA+VEVRL QNEMR+GCMRYVSN+ G TLSIPKDA  P YL +SLKAVYPP C+RDPKTGKR+
Sbjct:    2 ESFSSDEVNKLPAVPRVRRSSGAKPPAPRSSRSASKSSKRESSIAEKRPIRQSARRRISKRSFREDSVNSEYEDNDESHVVVRRTSRRIQKTRKVIEXXXXXXXXIVH----TEDKDDSET---KEENESSPGIGDEXXXXXXXXXXXXXXXXXXXXXXXXXKSASIYSRRAKKRRKTIRESSSDGRG--NSXXXXXXXXXXXXXDLGNESAEAEGVEIIKGQNDILAQLEEEGNDNDSEDFKSESSEEVKPMKSRRLTSRQRALQGENVKLEYSKLESPKTKKKEVQEEWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFTLATEARAAQVEVRLAQNEMRDGCMRYVSNKNGITLSIPKDASTPSYLGRSLKAVYPPKCERDPKTGKRL 400          
BLAST of Ggra9908.t1 vs. uniprot
Match: R7QG84 (PAPA-1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG84_CHOCR)

HSP 1 Score: 201 bits (511), Expect = 3.530e-57
Identity = 116/191 (60.73%), Postives = 147/191 (76.96%), Query Frame = 0
Query:  212 GQKDILAQLEEEVNKEDSED--FKSESSEEPKPKRSRRLTSRQRALQGESVKLEYSKLDSPKAKKKEVQED-WDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFALATEARAAEVEVRLTQNEMREGCMRYVSNQEGSTLSIPKDAVVPPYLSKSLKAVYPPMCKRDPKTGKRVF 399
            G+  ILA+LEE    +D  D     +S  E   K++ RLT RQRA+QGE+VKLEY+KL+SPKAKK    E+ W +DEE ELK+QQ+ARLRQM+ EKRN+EKRAAMVDKVLRGVTSKRKK  +A+E R A+V  RL++NEMR+GC+R+VSN  G++LSIP++   P YL +SLKAVYP  C RDP+TGKR+F
Sbjct:  189 GRDKILAELEEAEAMDDGSDPLDSDDSVVEKGTKKTERLTRRQRAMQGENVKLEYTKLESPKAKKAAPPEEAWSNDEEAELKKQQRARLRQMIHEKRNKEKRAAMVDKVLRGVTSKRKKLTMASEERVAKVGTRLSKNEMRKGCIRFVSNPTGTSLSIPEEDDAPAYLQESLKAVYPKPCLRDPRTGKRIF 379          
BLAST of Ggra9908.t1 vs. uniprot
Match: A0A1X6PFD6 (PAPA-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFD6_PORUM)

HSP 1 Score: 88.6 bits (218), Expect = 1.090e-15
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 0
Query:  279 EDWDHD---EEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFALATEARAAEVEVRLTQNEMREGCMRYVSNQEGSTLSIPKDAVVPPYLSKSLKAVYPPM-CKRDPKTGKRVF 399
            ED D D   EE  L+++Q ARLR++  EK+ +EKR A +++VLRGVT+KRKK   A+EA  A+    L  N  R G +R++SN+ G +LS      +PP ++  L    PP  C  DPKTGKRVF
Sbjct:  248 EDGDGDADAEEAVLRKEQVARLRRITHEKKRQEKRVATIERVLRGVTTKRKKAVAASEAVVADARDSLAVNRPRPGAVRHISNRGGESLSFVAGDALPPLVAVGLPRRAPPRPCTWDPKTGKRVF 372          
BLAST of Ggra9908.t1 vs. uniprot
Match: A0A7S0T9H4 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T9H4_9RHOD)

HSP 1 Score: 57.8 bits (138), Expect = 6.910e-6
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 0
Query:  248 LTSRQRALQG----ESVKLE-YSKLDSPKAKKKEVQEDWDHDEEMELKRQQKARLRQMVSEKRNREKRAAMVDKVLRGVTSKRKKFALATEARAAEVEVRLTQNEMREGCMRYVSNQEGSTLSIPKD---AVVPPYLSKSLK------AVYPPMCKRDPKTGKRVFPSILTS 405
            +T+RQRA+ G    E V L  +       A K++ + D +  E  E KR Q +RLR + SEK+ +E++ A ++KVLRG + ++++     E R    E     + +     R  + ++GS L +  D       PYLS  LK         PP+C RDPKTGKR+ P   T+
Sbjct:   66 MTARQRAMAGHEAPELVDLSHFYATQGIGAGKQQRELDPERKERRERKRLQASRLRAINSEKKRQERQEATIEKVLRGASRRQRQ---GEETRKLRQEQASNVDTIAPRHARLWAQKDGSQLVVFPDYSEIQTDPYLSHFLKYETAPNVPRPPVCARDPKTGKRILPVTTTA 234          
The following BLAST results are available for this feature:
BLAST of Ggra9908.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J1X82.110e-12870.59PAPA-1 domain-containing protein n=1 Tax=Gracilari... [more]
R7QG843.530e-5760.73PAPA-1 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A1X6PFD61.090e-1545.60PAPA-1 domain-containing protein n=1 Tax=Porphyra ... [more]
A0A7S0T9H46.910e-633.14Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 287..307
NoneNo IPR availableCOILSCoilCoilcoord: 210..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..130
NoneNo IPR availablePANTHERPTHR21561:SF12INO80 COMPLEX SUBUNIT Bcoord: 27..386
IPR006880INO80 complex subunit B-like conserved regionSMARTSM01406PAPA_1_2coord: 286..370
e-value: 3.0E-6
score: 36.8
IPR006880INO80 complex subunit B-like conserved regionPFAMPF04795PAPA-1coord: 286..369
e-value: 5.1E-12
score: 46.4
IPR029523INO80 complex, subunit Ies2PANTHERPTHR21561INO80 COMPLEX SUBUNIT Bcoord: 27..386

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:63574..64803 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9908.t1Ggra9908.t1Gracilaria gracilis GNS1m malemRNAtig00000887_pilon 63574..64803 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9908.t1 ID=Ggra9908.t1|Name=Ggra9908.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MSPPESSSSDEINKLPSVPRVRRSSGAKPPRPSRSGVKNKRDSPVAEKRP
VRQSTRRRVTKRILREDSAHSEDDGNDSYIPLRRTSRRSQKTRKVIEDDD
DDYEEDDDDDEATPDNDNKDLLYGKDDQEVSVDMLDDEDDDDIDLDDEDD
GSKSASVSVSRSKRKRKTIRESSSDSRDVDQGDENGNVDGNEDSNDYTND
SGEGEGSEIITGQKDILAQLEEEVNKEDSEDFKSESSEEPKPKRSRRLTS
RQRALQGESVKLEYSKLDSPKAKKKEVQEDWDHDEEMELKRQQKARLRQM
VSEKRNREKRAAMVDKVLRGVTSKRKKFALATEARAAEVEVRLTQNEMRE
GCMRYVSNQEGSTLSIPKDAVVPPYLSKSLKAVYPPMCKRDPKTGKRVFP
SILTSTSTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006880INO80B_C
IPR029523INO80B/Ies2