Ggra9908.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9908.t1
Unique NameGgra9908.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:63574..64803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9908Ggra9908Gracilaria gracilis GNS1m malegenetig00000887_pilon 63574..64803 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9908.t1.stop1Ggra9908.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 63574..63576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9908.t1.CDS1Ggra9908.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 63574..64803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9908.t1.exon1Ggra9908.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 63574..64803 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9908.t1.start1Ggra9908.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 64801..64803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9908.t1Ggra9908.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 63574..64803 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9908.t1 ID=Ggra9908.t1|Name=Ggra9908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp
MSPPESSSSDEINKLPSVPRVRRSSGAKPPRPSRSGVKNKRDSPVAEKRP
VRQSTRRRVTKRILREDSAHSEDDGNDSYIPLRRTSRRSQKTRKVIEDDD
DDYEEDDDDDEATPDNDNKDLLYGKDDQEVSVDMLDDEDDDDIDLDDEDD
GSKSASVSVSRSKRKRKTIRESSSDSRDVDQGDENGNVDGNEDSNDYTND
SGEGEGSEIITGQKDILAQLEEEVNKEDSEDFKSESSEEPKPKRSRRLTS
RQRALQGESVKLEYSKLDSPKAKKKEVQEDWDHDEEMELKRQQKARLRQM
VSEKRNREKRAAMVDKVLRGVTSKRKKFALATEARAAEVEVRLTQNEMRE
GCMRYVSNQEGSTLSIPKDAVVPPYLSKSLKAVYPPMCKRDPKTGKRVFP
SILTSTSTL*
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spliced messenger RNA

>Ggra9908.t1 ID=Ggra9908.t1|Name=Ggra9908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000887_pilon:63574..64803- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCACCGGAATCTTCTAGCAGCGATGAAATTAATAAGCTCCCCTC
AGTACCGCGTGTTCGTCGAAGCAGCGGTGCCAAGCCCCCGCGACCAAGCC
GCTCCGGAGTAAAGAACAAACGCGATTCCCCCGTTGCCGAGAAACGTCCC
GTTCGACAATCAACGCGTCGCCGCGTTACGAAAAGAATTCTTCGGGAAGA
CTCTGCCCACAGCGAGGATGATGGAAACGATTCTTACATCCCGCTTCGAC
GCACCTCGCGACGCTCCCAGAAAACACGCAAGGTAATAGAAGACGATGAT
GATGATTATGAAGAAGATGATGATGACGACGAAGCCACGCCCGATAATGA
TAATAAGGACCTTCTCTATGGGAAAGATGACCAAGAAGTGAGTGTGGATA
TGTTGGATGACGAAGACGATGATGATATTGATTTAGACGATGAGGACGAT
GGGTCTAAGAGCGCGTCTGTCTCGGTTTCGCGTTCCAAGAGGAAACGTAA
GACTATTAGGGAAAGTAGCAGTGATAGCAGAGACGTCGATCAGGGTGATG
AGAATGGGAATGTCGATGGCAACGAAGACAGCAACGATTACACGAACGAT
AGTGGTGAAGGGGAAGGCAGTGAAATCATCACAGGACAGAAGGACATCCT
CGCCCAATTAGAGGAAGAAGTTAATAAAGAAGATTCTGAGGATTTCAAGA
GCGAGTCTTCAGAGGAACCCAAACCGAAAAGGTCTAGAAGGTTAACAAGT
AGGCAAAGAGCATTACAAGGTGAGAGTGTGAAACTTGAGTATTCAAAGCT
AGACTCCCCGAAGGCGAAGAAGAAAGAGGTTCAAGAAGACTGGGACCATG
ATGAAGAAATGGAGTTGAAGCGACAGCAAAAGGCAAGACTTCGTCAAATG
GTGTCCGAGAAAAGAAACAGGGAGAAGCGAGCAGCTATGGTAGACAAAGT
GCTAAGAGGAGTGACCTCCAAGAGGAAGAAGTTTGCTTTAGCAACTGAGG
CAAGGGCGGCAGAAGTTGAAGTACGTCTAACACAGAATGAAATGAGAGAA
GGATGCATGCGGTATGTCAGTAACCAGGAGGGGTCTACACTTTCCATCCC
GAAAGATGCTGTTGTTCCACCGTACTTGAGCAAGAGCCTGAAAGCGGTTT
ATCCCCCGATGTGCAAGCGAGATCCGAAGACAGGGAAGAGGGTGTTTCCT
AGCATTTTAACTTCGACCTCAACACTCTAA
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protein sequence of Ggra9908.t1

>Ggra9908.t1 ID=Ggra9908.t1|Name=Ggra9908.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MSPPESSSSDEINKLPSVPRVRRSSGAKPPRPSRSGVKNKRDSPVAEKRP
VRQSTRRRVTKRILREDSAHSEDDGNDSYIPLRRTSRRSQKTRKVIEDDD
DDYEEDDDDDEATPDNDNKDLLYGKDDQEVSVDMLDDEDDDDIDLDDEDD
GSKSASVSVSRSKRKRKTIRESSSDSRDVDQGDENGNVDGNEDSNDYTND
SGEGEGSEIITGQKDILAQLEEEVNKEDSEDFKSESSEEPKPKRSRRLTS
RQRALQGESVKLEYSKLDSPKAKKKEVQEDWDHDEEMELKRQQKARLRQM
VSEKRNREKRAAMVDKVLRGVTSKRKKFALATEARAAEVEVRLTQNEMRE
GCMRYVSNQEGSTLSIPKDAVVPPYLSKSLKAVYPPMCKRDPKTGKRVFP
SILTSTSTL*
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mRNA from alignment at tig00000887_pilon:63574..64803-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9908.t1 ID=Ggra9908.t1|Name=Ggra9908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000887_pilon:63574..64803- (Gracilaria gracilis GNS1m male)
ATGTCGCCACCGGAATCTTCTAGCAGCGATGAAATTAATAAGCTCCCCTC
AGTACCGCGTGTTCGTCGAAGCAGCGGTGCCAAGCCCCCGCGACCAAGCC
GCTCCGGAGTAAAGAACAAACGCGATTCCCCCGTTGCCGAGAAACGTCCC
GTTCGACAATCAACGCGTCGCCGCGTTACGAAAAGAATTCTTCGGGAAGA
CTCTGCCCACAGCGAGGATGATGGAAACGATTCTTACATCCCGCTTCGAC
GCACCTCGCGACGCTCCCAGAAAACACGCAAGGTAATAGAAGACGATGAT
GATGATTATGAAGAAGATGATGATGACGACGAAGCCACGCCCGATAATGA
TAATAAGGACCTTCTCTATGGGAAAGATGACCAAGAAGTGAGTGTGGATA
TGTTGGATGACGAAGACGATGATGATATTGATTTAGACGATGAGGACGAT
GGGTCTAAGAGCGCGTCTGTCTCGGTTTCGCGTTCCAAGAGGAAACGTAA
GACTATTAGGGAAAGTAGCAGTGATAGCAGAGACGTCGATCAGGGTGATG
AGAATGGGAATGTCGATGGCAACGAAGACAGCAACGATTACACGAACGAT
AGTGGTGAAGGGGAAGGCAGTGAAATCATCACAGGACAGAAGGACATCCT
CGCCCAATTAGAGGAAGAAGTTAATAAAGAAGATTCTGAGGATTTCAAGA
GCGAGTCTTCAGAGGAACCCAAACCGAAAAGGTCTAGAAGGTTAACAAGT
AGGCAAAGAGCATTACAAGGTGAGAGTGTGAAACTTGAGTATTCAAAGCT
AGACTCCCCGAAGGCGAAGAAGAAAGAGGTTCAAGAAGACTGGGACCATG
ATGAAGAAATGGAGTTGAAGCGACAGCAAAAGGCAAGACTTCGTCAAATG
GTGTCCGAGAAAAGAAACAGGGAGAAGCGAGCAGCTATGGTAGACAAAGT
GCTAAGAGGAGTGACCTCCAAGAGGAAGAAGTTTGCTTTAGCAACTGAGG
CAAGGGCGGCAGAAGTTGAAGTACGTCTAACACAGAATGAAATGAGAGAA
GGATGCATGCGGTATGTCAGTAACCAGGAGGGGTCTACACTTTCCATCCC
GAAAGATGCTGTTGTTCCACCGTACTTGAGCAAGAGCCTGAAAGCGGTTT
ATCCCCCGATGTGCAAGCGAGATCCGAAGACAGGGAAGAGGGTGTTTCCT
AGCATTTTAACTTCGACCTCAACACTCTAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:63574..64803-

>Ggra9908.t1 ID=Ggra9908.t1|Name=Ggra9908.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000887_pilon:63574..64803- (Gracilaria gracilis GNS1m male)
ATGTCGCCACCGGAATCTTCTAGCAGCGATGAAATTAATAAGCTCCCCTC
AGTACCGCGTGTTCGTCGAAGCAGCGGTGCCAAGCCCCCGCGACCAAGCC
GCTCCGGAGTAAAGAACAAACGCGATTCCCCCGTTGCCGAGAAACGTCCC
GTTCGACAATCAACGCGTCGCCGCGTTACGAAAAGAATTCTTCGGGAAGA
CTCTGCCCACAGCGAGGATGATGGAAACGATTCTTACATCCCGCTTCGAC
GCACCTCGCGACGCTCCCAGAAAACACGCAAGGTAATAGAAGACGATGAT
GATGATTATGAAGAAGATGATGATGACGACGAAGCCACGCCCGATAATGA
TAATAAGGACCTTCTCTATGGGAAAGATGACCAAGAAGTGAGTGTGGATA
TGTTGGATGACGAAGACGATGATGATATTGATTTAGACGATGAGGACGAT
GGGTCTAAGAGCGCGTCTGTCTCGGTTTCGCGTTCCAAGAGGAAACGTAA
GACTATTAGGGAAAGTAGCAGTGATAGCAGAGACGTCGATCAGGGTGATG
AGAATGGGAATGTCGATGGCAACGAAGACAGCAACGATTACACGAACGAT
AGTGGTGAAGGGGAAGGCAGTGAAATCATCACAGGACAGAAGGACATCCT
CGCCCAATTAGAGGAAGAAGTTAATAAAGAAGATTCTGAGGATTTCAAGA
GCGAGTCTTCAGAGGAACCCAAACCGAAAAGGTCTAGAAGGTTAACAAGT
AGGCAAAGAGCATTACAAGGTGAGAGTGTGAAACTTGAGTATTCAAAGCT
AGACTCCCCGAAGGCGAAGAAGAAAGAGGTTCAAGAAGACTGGGACCATG
ATGAAGAAATGGAGTTGAAGCGACAGCAAAAGGCAAGACTTCGTCAAATG
GTGTCCGAGAAAAGAAACAGGGAGAAGCGAGCAGCTATGGTAGACAAAGT
GCTAAGAGGAGTGACCTCCAAGAGGAAGAAGTTTGCTTTAGCAACTGAGG
CAAGGGCGGCAGAAGTTGAAGTACGTCTAACACAGAATGAAATGAGAGAA
GGATGCATGCGGTATGTCAGTAACCAGGAGGGGTCTACACTTTCCATCCC
GAAAGATGCTGTTGTTCCACCGTACTTGAGCAAGAGCCTGAAAGCGGTTT
ATCCCCCGATGTGCAAGCGAGATCCGAAGACAGGGAAGAGGGTGTTTCCT
AGCATTTTAACTTCGACCTCAACACTCTAA
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