Ggra9897.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9897.t1
Unique NameGgra9897.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length482
Homology
BLAST of Ggra9897.t1 vs. uniprot
Match: A0A2V3IM95 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM95_9FLOR)

HSP 1 Score: 421 bits (1082), Expect = 1.860e-137
Identity = 279/641 (43.53%), Postives = 327/641 (51.01%), Query Frame = 0
Query:   30 RKPGRPPTYVFSKPDHELSENERRLKGSVIKRRIRQNRSYHRKKHLRQLAA---------VNADANSS---------------SPAVSTTDHSTHVFPPVAGPPPP--------------PLQLPALPSDPSNSAR----LQFPGPPMPSLSPLPSILPLNQSPFP-----------SNAAFDVSTSSTI-----------------------------------------------------------------------------GRFFMDSIAKELLSEHRGSHLPEVQKGFIVNYIQKLLSFGPERLHCDGAQRQLAMKLYDNERANMETALRLSESLHTSAEPLLHRFLSVAATVMRYSVSASTRLQLFRGALQLPCSPAERRIHARIRLALGEAYLDLLSFTPAKEHLEAAIADLAMYQDSDDSDL-----------------------------------------------------------SKGKALVAVTRAIDVLVTVKFEQMPIYADALRALGRVHFRMGNVDKAQKVFLQGLQIVQDWMARPDWHLAPFQHCAHLDVFLVESIAWTFVKQDRIDDAKALFEQAKTQRRMRHLDETRCVDPFEDAPHPGSLSEQGGTRISWLYTRHLY 481
            RKPGRPPTYVFSKPDHELSENERRLKGSVIKRRIRQNRSYHRKK  RQL A         V   A+SS                P  S   HST V PP    PP               P  LP  P  PS +A     LQ P    PS SP     PLNQ P P           S+A  DVS  ST+                                                                             GR+ +  + + LLSE   SH P VQ+ F+ ++I +L +F   +L CDGA RQLAMK YD E +NMETAL+L+E+LH+ ++PLL+ FLSVAATVMRYSV A  RL +F  AL+       +   AR+RLALGEAYLD LSF PAK+HLE A+ADLA+++  DD+DL                                                            + KALVAVTRAI +LV VKFE+MPIYADALRALG V FRMG V++AQK F Q L IVQDW ARPDW  AP QHC HLDVFL+E IAWTFVKQ+ ++DA+ LF+QAK QRR R LDET CVDP ED  H    + +   R + +YTRHLY
Sbjct:   75 RKPGRPPTYVFSKPDHELSENERRLKGSVIKRRIRQNRSYHRKKRQRQLQAETSARLAHTVPTTAHSSLPNPLSSHHASLPPAPPPYSAPMHSTAVHPPSGAIPPLSTLPSSFPLSHSPFPAPLPFDPPAPSPTASAAQLLQQP----PSSSP-----PLNQPPLPGHAPAAAHSALSDAVLDVSYQSTLTKPNNILNASNRPLLTAQLTARTATLPIDPTSLPNLLLFPSSFQPDSALAMLGLSHSQNPSVIQSMVDANILSTVPSGRYILHPVTRALLSEQHTSHPPHVQQAFVHHFINRLRAFNAHQLTCDGAHRQLAMKEYDQEHSNMETALQLAETLHSCSQPLLYHFLSVAATVMRYSVPAYARLDIFHNALERSFPSTVKTDQARLRLALGEAYLDQLSFAPAKDHLEVALADLAIHRSRDDTDLHSILALLLLAEFRASEHEFENSKRLLTQALQSMRDGPMQRSSFAACCLLTLSSVYCALNEENKALVAVTRAIGILVAVKFERMPIYADALRALGCVRFRMGQVNEAQKQFTQALHIVQDWKARPDWQQAPVQHCVHLDVFLIELIAWTFVKQNMMNDAETLFQQAKAQRRARQLDETTCVDPSEDLAHLSGTNSKHRERKASIYTRHLY 706          
BLAST of Ggra9897.t1 vs. uniprot
Match: A0A1X6NZQ9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZQ9_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 2.070e-11
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 0
Query:  335 KALVAVTRAIDVLVTVKFEQMPIYADALRALGRVHFRMGNVDKAQKVFLQGLQIVQDWMARPDWHLAPFQHCAHLDVFLVESIAWTFVKQDRIDDAKALFEQAKTQRRMRHLDETRCVDPFEDAPHPGSL 464
            KA   V++ +DVL T+++ +MPI+ADAL +   V   +G+   A++ F   L++V +W  +  W   P QHC  LD++L+E +A     Q R++DA  + ++A+  R  R L   R        P  G L
Sbjct:  910 KARSVVSQLLDVLDTMRYSKMPIFADALGSQAMVSLALGDAAAAERQFSAALEVVAEWGTKT-WGSLPVQHCLDLDLWLLEGLARAMRVQGRVEDAAYVTQKAREGRVSRQLGPPRSGRVSSRQPAGGVL 1038          
BLAST of Ggra9897.t1 vs. uniprot
Match: A0A6T6LM98 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6LM98_9RHOD)

HSP 1 Score: 72.0 bits (175), Expect = 4.170e-11
Identity = 49/153 (32.03%), Postives = 73/153 (47.71%), Query Frame = 0
Query:  335 KALVAVTRAIDVLVTVKFEQMPIYADALRALGRVHFRMGNVDKAQKVFLQGLQIVQDWMARPDWHLAPFQHCAHLDVFLVESIAWTFVKQDRIDDAK---ALFEQAKTQRRMRHLDETRCVDPFEDAPHPGSLSEQGGTRI--SWLYT-RHLY 481
            +A    T  ++ L  +++++MPIYADAL  L  V    G+   A + F  GL+IV  W ++  W   P QHC  LD++L+E +A +   Q    DAK    L   A+  RR++ L                +    GG  +  +WL T RHLY
Sbjct:   42 RANYVATELLNTLHAMRYDKMPIYADALGVLAMVRMAAGDYTDAARQFGSGLEIVAGWGSK-SWTSVPVQHCLDLDIWLMEGLAISLNLQGLEKDAKYMVTLASDARLSRRLKSL----------------TYDILGGEHVVPTWLTTSRHLY 177          
BLAST of Ggra9897.t1 vs. uniprot
Match: A0A2V3IDM7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDM7_9FLOR)

HSP 1 Score: 70.1 bits (170), Expect = 4.760e-9
Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 0
Query:   23 PRPQ-PRKRKPGRPPTYVFSKPDHELSENERRLKGSVIKRRIRQNRSYHRKKHLRQLAAVNADANSSSPAV--STTDHSTHVFPP--VAGPPPPPLQL 115
            P PQ PR R+PGRP TYVF KPDH L+E ER+ K ++ KRR+RQNRSYHR+K  R    +   A  SSP V       S  + PP  +AG    PL+L
Sbjct:   21 PTPQRPRHRRPGRPATYVFDKPDHLLTEKERKHKIAIEKRRLRQNRSYHRRKAQRNAQRL---AAPSSPQVVPQAPQSSQPILPPSLIAGFSQNPLEL 115          
BLAST of Ggra9897.t1 vs. uniprot
Match: A0A7S0G253 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G253_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 6.110e-8
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 0
Query:   30 RKPGRPPTYVFSKPDHELSENERRLKGSVIKRRIRQNRSYHRKKHLR 76
            R+PGRP TY+F +PD EL+E +R+LK +V+KRR RQNRSY R+K ++
Sbjct:   20 RRPGRPATYIFDRPDDELTEEDRKLKNAVLKRRSRQNRSYQRRKMMK 66          
BLAST of Ggra9897.t1 vs. uniprot
Match: A0A5J4Z1G7 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1G7_PORPP)

HSP 1 Score: 65.1 bits (157), Expect = 1.920e-7
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   29 KRKPGRPPTYVFSKPDHELSENERRLKGSVIKRRIRQNRSYHRKKHLRQ 77
            KRK GRP  YVF +PD EL+E ER+LK S++KRR RQN+SYHRK+ L Q
Sbjct:    7 KRKAGRPQMYVFDRPDAELTEAERKLKSSILKRRQRQNQSYHRKRALLQ 55          
The following BLAST results are available for this feature:
BLAST of Ggra9897.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IM951.860e-13743.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NZQ92.070e-1133.08Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6T6LM984.170e-1132.03Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IDM74.760e-950.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0G2536.110e-859.57Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A5J4Z1G71.920e-765.31Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 215..450
e-value: 3.8E-11
score: 44.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 290..438
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..118
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..481
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 359..392
score: 8.5849

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:114900..116855 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9897.t1Ggra9897.t1Gracilaria gracilis GNS1m malemRNAtig00000009_pilon 114900..116855 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9897.t1 ID=Ggra9897.t1|Name=Ggra9897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=482bp
MLALACMCPHMPGASGAENPDCPRPQPRKRKPGRPPTYVFSKPDHELSEN
ERRLKGSVIKRRIRQNRSYHRKKHLRQLAAVNADANSSSPAVSTTDHSTH
VFPPVAGPPPPPLQLPALPSDPSNSARLQFPGPPMPSLSPLPSILPLNQS
PFPSNAAFDVSTSSTIGRFFMDSIAKELLSEHRGSHLPEVQKGFIVNYIQ
KLLSFGPERLHCDGAQRQLAMKLYDNERANMETALRLSESLHTSAEPLLH
RFLSVAATVMRYSVSASTRLQLFRGALQLPCSPAERRIHARIRLALGEAY
LDLLSFTPAKEHLEAAIADLAMYQDSDDSDLSKGKALVAVTRAIDVLVTV
KFEQMPIYADALRALGRVHFRMGNVDKAQKVFLQGLQIVQDWMARPDWHL
APFQHCAHLDVFLVESIAWTFVKQDRIDDAKALFEQAKTQRRMRHLDETR
CVDPFEDAPHPGSLSEQGGTRISWLYTRHLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat