Ggra9897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9897.t1
Unique NameGgra9897.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:114900..116855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9897Ggra9897Gracilaria gracilis GNS1m malegenetig00000009_pilon 114900..116855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9897.t1Ggra9897.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 114900..116855 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9897.t1.stop1Ggra9897.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 114900..114902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9897.t1.CDS1Ggra9897.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 114900..115348 -
Ggra9897.t1.CDS2Ggra9897.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000009_pilon 115526..116023 -
Ggra9897.t1.CDS3Ggra9897.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000009_pilon 116241..116244 -
Ggra9897.t1.CDS4Ggra9897.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000009_pilon 116361..116855 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9897.t1.exon1Ggra9897.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 114900..115348 -
Ggra9897.t1.exon2Ggra9897.t1.exon2Gracilaria gracilis GNS1m maleexontig00000009_pilon 115526..116023 -
Ggra9897.t1.exon3Ggra9897.t1.exon3Gracilaria gracilis GNS1m maleexontig00000009_pilon 116241..116244 -
Ggra9897.t1.exon4Ggra9897.t1.exon4Gracilaria gracilis GNS1m maleexontig00000009_pilon 116361..116855 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9897.t1.intron1Ggra9897.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000009_pilon 115349..115525 -
Ggra9897.t1.intron2Ggra9897.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000009_pilon 116024..116240 -
Ggra9897.t1.intron3Ggra9897.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000009_pilon 116245..116360 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9897.t1.start1Ggra9897.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 116853..116855 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9897.t1 ID=Ggra9897.t1|Name=Ggra9897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=482bp
MLALACMCPHMPGASGAENPDCPRPQPRKRKPGRPPTYVFSKPDHELSEN
ERRLKGSVIKRRIRQNRSYHRKKHLRQLAAVNADANSSSPAVSTTDHSTH
VFPPVAGPPPPPLQLPALPSDPSNSARLQFPGPPMPSLSPLPSILPLNQS
PFPSNAAFDVSTSSTIGRFFMDSIAKELLSEHRGSHLPEVQKGFIVNYIQ
KLLSFGPERLHCDGAQRQLAMKLYDNERANMETALRLSESLHTSAEPLLH
RFLSVAATVMRYSVSASTRLQLFRGALQLPCSPAERRIHARIRLALGEAY
LDLLSFTPAKEHLEAAIADLAMYQDSDDSDLSKGKALVAVTRAIDVLVTV
KFEQMPIYADALRALGRVHFRMGNVDKAQKVFLQGLQIVQDWMARPDWHL
APFQHCAHLDVFLVESIAWTFVKQDRIDDAKALFEQAKTQRRMRHLDETR
CVDPFEDAPHPGSLSEQGGTRISWLYTRHLY*
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spliced messenger RNA

>Ggra9897.t1 ID=Ggra9897.t1|Name=Ggra9897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000009_pilon:114900..116855- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCACTTGCTTGTATGTGCCCCCATATGCCCGGCGCCTCCGGCGC
CGAAAACCCCGATTGCCCACGTCCCCAGCCGCGCAAGCGCAAGCCTGGTC
GCCCTCCCACCTACGTCTTCTCCAAGCCCGACCATGAGCTCTCCGAGAAT
GAGCGCCGCCTGAAAGGCTCCGTTATCAAACGCCGCATCCGACAGAATCG
CTCATACCATCGAAAGAAGCACCTTCGACAGCTGGCGGCGGTTAACGCCG
ATGCTAATTCCTCATCTCCAGCTGTCTCCACCACTGACCATTCCACTCAT
GTATTCCCCCCTGTCGCTGGTCCACCACCGCCGCCACTCCAATTGCCGGC
TCTGCCTTCAGATCCCTCCAACTCGGCGCGTCTCCAATTCCCTGGCCCAC
CGATGCCATCACTGTCGCCTTTGCCATCCATCCTACCTCTAAACCAATCT
CCCTTTCCTTCCAATGCTGCATTTGACGTCTCCACTTCCTCTACAATTGG
CCGCTTCTTTATGGACTCAATCGCGAAGGAGCTGCTCTCCGAACATCGAG
GATCCCACCTACCTGAAGTGCAGAAAGGATTCATTGTCAATTACATTCAG
AAACTTCTATCGTTCGGTCCGGAACGTCTACACTGTGATGGGGCTCAACG
ACAACTAGCCATGAAGCTGTACGATAACGAACGCGCAAACATGGAAACCG
CGCTTCGCCTATCGGAATCTCTGCATACATCTGCTGAACCTCTTTTGCAT
CGTTTTCTTTCCGTAGCTGCGACGGTTATGAGATATTCTGTCTCTGCGTC
GACGCGTCTTCAACTCTTCCGCGGTGCTCTACAGCTTCCTTGTTCGCCTG
CAGAACGAAGAATCCATGCTCGTATTCGTCTAGCTCTTGGAGAAGCATAC
CTCGACTTGCTGTCGTTCACTCCAGCGAAGGAGCACTTGGAAGCGGCCAT
TGCCGATCTTGCAATGTATCAAGACAGTGACGATTCAGATCTGAGTAAAG
GAAAAGCTTTGGTCGCTGTGACACGAGCCATTGATGTTCTCGTTACTGTG
AAGTTTGAGCAAATGCCAATATACGCGGATGCTCTGCGTGCCTTGGGACG
TGTCCACTTCCGTATGGGAAATGTCGATAAGGCACAGAAGGTATTCTTGC
AAGGCTTGCAAATTGTACAAGACTGGATGGCTCGCCCAGATTGGCACTTA
GCGCCATTCCAGCATTGTGCGCATCTTGATGTTTTTTTGGTGGAATCAAT
TGCATGGACGTTTGTTAAACAAGATAGGATAGATGATGCCAAGGCTCTGT
TTGAACAGGCCAAGACTCAAAGGAGAATGAGGCATTTGGACGAGACGCGG
TGCGTGGATCCGTTTGAAGATGCTCCCCACCCTGGCAGCTTGTCAGAGCA
AGGTGGTACACGGATTTCATGGCTGTACACCAGACATTTGTACTAA
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protein sequence of Ggra9897.t1

>Ggra9897.t1 ID=Ggra9897.t1|Name=Ggra9897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=482bp
MLALACMCPHMPGASGAENPDCPRPQPRKRKPGRPPTYVFSKPDHELSEN
ERRLKGSVIKRRIRQNRSYHRKKHLRQLAAVNADANSSSPAVSTTDHSTH
VFPPVAGPPPPPLQLPALPSDPSNSARLQFPGPPMPSLSPLPSILPLNQS
PFPSNAAFDVSTSSTIGRFFMDSIAKELLSEHRGSHLPEVQKGFIVNYIQ
KLLSFGPERLHCDGAQRQLAMKLYDNERANMETALRLSESLHTSAEPLLH
RFLSVAATVMRYSVSASTRLQLFRGALQLPCSPAERRIHARIRLALGEAY
LDLLSFTPAKEHLEAAIADLAMYQDSDDSDLSKGKALVAVTRAIDVLVTV
KFEQMPIYADALRALGRVHFRMGNVDKAQKVFLQGLQIVQDWMARPDWHL
APFQHCAHLDVFLVESIAWTFVKQDRIDDAKALFEQAKTQRRMRHLDETR
CVDPFEDAPHPGSLSEQGGTRISWLYTRHLY*
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mRNA from alignment at tig00000009_pilon:114900..116855-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9897.t1 ID=Ggra9897.t1|Name=Ggra9897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1956bp|location=Sequence derived from alignment at tig00000009_pilon:114900..116855- (Gracilaria gracilis GNS1m male)
ATGTTGGCACTTGCTTGTATGTGCCCCCATATGCCCGGCGCCTCCGGCGC
CGAAAACCCCGATTGCCCACGTCCCCAGCCGCGCAAGCGCAAGCCTGGTC
GCCCTCCCACCTACGTCTTCTCCAAGCCCGACCATGAGCTCTCCGAGAAT
GAGCGCCGCCTGAAAGGCTCCGTTATCAAACGCCGCATCCGACAGAATCG
CTCATACCATCGAAAGAAGCACCTTCGACAGCTGGCGGCGGTTAACGCCG
ATGCTAATTCCTCATCTCCAGCTGTCTCCACCACTGACCATTCCACTCAT
GTATTCCCCCCTGTCGCTGGTCCACCACCGCCGCCACTCCAATTGCCGGC
TCTGCCTTCAGATCCCTCCAACTCGGCGCGTCTCCAATTCCCTGGCCCAC
CGATGCCATCACTGTCGCCTTTGCCATCCATCCTACCTCTAAACCAATCT
CCCTTTCCTTCCAATGCTGCATTTGACGTCTCCACTTCCTCTACAGTACT
GTCAACGCATCGGCCAACTTCTCAACTTTGCATCCCATCTACTGATCAAG
ATCCTGCTGCGGAAACCGTCCTAGACATTTCTAACAGACACGCGCTTTCC
GATTCTAACAGATTGGTAAGAAGCGCAGCCACCAGACCGCTCTTAGCATC
ACAACTAGCCACTCGCATTGCTGCCCTTCCAATTGATCATTCCTGCTTAT
CCAAACTGCTAATCTTTCCTTCCACTTTCGATGCCACCTCTGCGCTCGCC
GTTATGAATGTTCGCTTCGACAACGCTTCCACCTTGATTCAATCCCTTGT
CGACACTAATCTGCTATCTGTTGACAACTCAGGCCGCTTCTTTATGGACT
CAATCGCGAAGGAGCTGCTCTCCGAACATCGAGGATCCCACCTACCTGAA
GTGCAGAAAGGATTCATTGTCAATTACATTCAGAAACTTCTATCGTTCGG
TCCGGAACGTCTACACTGTGATGGGGCTCAACGACAACTAGCCATGAAGC
TGTACGATAACGAACGCGCAAACATGGAAACCGCGCTTCGCCTATCGGAA
TCTCTGCATACATCTGCTGAACCTCTTTTGCATCGTTTTCTTTCCGTAGC
TGCGACGGTTATGAGATATTCTGTCTCTGCGTCGACGCGTCTTCAACTCT
TCCGCGGTGCTCTACAGCTTCCTTGTTCGCCTGCAGAACGAAGAATCCAT
GCTCGTATTCGTCTAGCTCTTGGAGAAGCATACCTCGACTTGCTGTCGTT
CACTCCAGCGAAGGAGCACTTGGAAGCGGCCATTGCCGATCTTGCAATGT
ATCAAGACAGTGACGATTCAGATCTGAGTAGTATGTTGGCCCTTCTTCTT
CTTGCGGAGCTCCGAGCATCAGAACGGGAATTTCATCATGCGAAGAATCT
GCTCAGTCAAGCGCTGCAAAGCATGCGCGGTCGCTCCATGCAACGGTCGT
CATATGCTGCATGTTGTTTGCTAACTCTGGCGTCTGTCTACTCGGCAATG
CATGAAGAAGGAAAAGCTTTGGTCGCTGTGACACGAGCCATTGATGTTCT
CGTTACTGTGAAGTTTGAGCAAATGCCAATATACGCGGATGCTCTGCGTG
CCTTGGGACGTGTCCACTTCCGTATGGGAAATGTCGATAAGGCACAGAAG
GTATTCTTGCAAGGCTTGCAAATTGTACAAGACTGGATGGCTCGCCCAGA
TTGGCACTTAGCGCCATTCCAGCATTGTGCGCATCTTGATGTTTTTTTGG
TGGAATCAATTGCATGGACGTTTGTTAAACAAGATAGGATAGATGATGCC
AAGGCTCTGTTTGAACAGGCCAAGACTCAAAGGAGAATGAGGCATTTGGA
CGAGACGCGGTGCGTGGATCCGTTTGAAGATGCTCCCCACCCTGGCAGCT
TGTCAGAGCAAGGTGGTACACGGATTTCATGGCTGTACACCAGACATTTG
TACTAA
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Coding sequence (CDS) from alignment at tig00000009_pilon:114900..116855-

>Ggra9897.t1 ID=Ggra9897.t1|Name=Ggra9897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1446bp|location=Sequence derived from alignment at tig00000009_pilon:114900..116855- (Gracilaria gracilis GNS1m male)
ATGTTGGCACTTGCTTGTATGTGCCCCCATATGCCCGGCGCCTCCGGCGC
CGAAAACCCCGATTGCCCACGTCCCCAGCCGCGCAAGCGCAAGCCTGGTC
GCCCTCCCACCTACGTCTTCTCCAAGCCCGACCATGAGCTCTCCGAGAAT
GAGCGCCGCCTGAAAGGCTCCGTTATCAAACGCCGCATCCGACAGAATCG
CTCATACCATCGAAAGAAGCACCTTCGACAGCTGGCGGCGGTTAACGCCG
ATGCTAATTCCTCATCTCCAGCTGTCTCCACCACTGACCATTCCACTCAT
GTATTCCCCCCTGTCGCTGGTCCACCACCGCCGCCACTCCAATTGCCGGC
TCTGCCTTCAGATCCCTCCAACTCGGCGCGTCTCCAATTCCCTGGCCCAC
CGATGCCATCACTGTCGCCTTTGCCATCCATCCTACCTCTAAACCAATCT
CCCTTTCCTTCCAATGCTGCATTTGACGTCTCCACTTCCTCTACAATTGG
CCGCTTCTTTATGGACTCAATCGCGAAGGAGCTGCTCTCCGAACATCGAG
GATCCCACCTACCTGAAGTGCAGAAAGGATTCATTGTCAATTACATTCAG
AAACTTCTATCGTTCGGTCCGGAACGTCTACACTGTGATGGGGCTCAACG
ACAACTAGCCATGAAGCTGTACGATAACGAACGCGCAAACATGGAAACCG
CGCTTCGCCTATCGGAATCTCTGCATACATCTGCTGAACCTCTTTTGCAT
CGTTTTCTTTCCGTAGCTGCGACGGTTATGAGATATTCTGTCTCTGCGTC
GACGCGTCTTCAACTCTTCCGCGGTGCTCTACAGCTTCCTTGTTCGCCTG
CAGAACGAAGAATCCATGCTCGTATTCGTCTAGCTCTTGGAGAAGCATAC
CTCGACTTGCTGTCGTTCACTCCAGCGAAGGAGCACTTGGAAGCGGCCAT
TGCCGATCTTGCAATGTATCAAGACAGTGACGATTCAGATCTGAGTAAAG
GAAAAGCTTTGGTCGCTGTGACACGAGCCATTGATGTTCTCGTTACTGTG
AAGTTTGAGCAAATGCCAATATACGCGGATGCTCTGCGTGCCTTGGGACG
TGTCCACTTCCGTATGGGAAATGTCGATAAGGCACAGAAGGTATTCTTGC
AAGGCTTGCAAATTGTACAAGACTGGATGGCTCGCCCAGATTGGCACTTA
GCGCCATTCCAGCATTGTGCGCATCTTGATGTTTTTTTGGTGGAATCAAT
TGCATGGACGTTTGTTAAACAAGATAGGATAGATGATGCCAAGGCTCTGT
TTGAACAGGCCAAGACTCAAAGGAGAATGAGGCATTTGGACGAGACGCGG
TGCGTGGATCCGTTTGAAGATGCTCCCCACCCTGGCAGCTTGTCAGAGCA
AGGTGGTACACGGATTTCATGGCTGTACACCAGACATTTGTACTAA
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