Ggra9892.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9892.t1
Unique NameGgra9892.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Homology
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A2V3IJU4 (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJU4_9FLOR)

HSP 1 Score: 252 bits (643), Expect = 5.220e-84
Identity = 120/153 (78.43%), Postives = 135/153 (88.24%), Query Frame = 0
Query:    1 MDAIVFDIFDCAPLPVPPPCATSTPPSHANSIQSLLDACSHALKSCLPRRMHEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGKTQDDIESGLVTPVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKTHAC 153
            MDA+VFDIFDCAPLPV P  A  TP S   ++QS++ + S+ALK+CLPRRM EPTGPFTLL DMLLG+FVPHGACKTMIDKLPLE+VG+ QDDIES +V PV RG+KCAICLGPYE G++VRHLTCNHAFHAECVDIWLEKRSLCPICKTHAC
Sbjct:    1 MDAVVFDIFDCAPLPVQPCAAAPTPLS---TLQSVVHSFSNALKACLPRRMREPTGPFTLLFDMLLGIFVPHGACKTMIDKLPLEIVGEEQDDIES-VVIPVKRGDKCAICLGPYEQGESVRHLTCNHAFHAECVDIWLEKRSLCPICKTHAC 149          
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A2V3IFI0 (RING finger protein 44 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFI0_9FLOR)

HSP 1 Score: 143 bits (361), Expect = 4.220e-41
Identity = 74/152 (48.68%), Postives = 93/152 (61.18%), Query Frame = 0
Query:    1 MDAIVFDIFDCAPLPVPPPCATSTPPSHANSIQSLLDACSHALKSCLPRRMHEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGKTQDDIESGLVTPVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKTHA 152
            MD I+FD FD A  P P    TS  P  +    S L    HA  SCLPRR++EPT   ++LLDMLL  FV HG  +++I+ LP E V    +  +S   + +S   KCAICL PY+  + VR L CNH FHA+CVD+WL KR+ CPICK HA
Sbjct:    1 MDLILFDFFDIALSPTP----TSHQPCQSEKTPSPLHPFFHAFTSCLPRRINEPTDIPSILLDMLLSNFVQHGLSQSLINALPTETVCSPSNPHQSPSDSHLSSPHKCAICLAPYQPRETVRRLPCNHPFHAQCVDLWLNKRNSCPICKAHA 148          
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A0D2MUW8 (E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUW8_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 6.630e-13
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:  101 PVS-RGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICK 149
            PVS   ++C ICLG YEDG+ ++ L C H++H+EC+D WLEK ++CP+CK
Sbjct:  197 PVSVDADECTICLGSYEDGEVLKQLPCGHSYHSECIDAWLEKSAVCPLCK 246          
BLAST of Ggra9892.t1 vs. uniprot
Match: RING-H2 finger protein ATL14-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E457B (RING-H2 finger protein ATL14-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E457B)

HSP 1 Score: 70.9 bits (172), Expect = 1.240e-12
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0
Query:   88 GKTQDDIESGLVTPVSRGEK-CAICLGPYEDGDAVRHL-TCNHAFHAECVDIWLEKRSLCPICKTHAC 153
            G + DD+E         GEK CA+CL  + +G+  R L TC H+FHA+CVD WL K  +CPIC+T AC
Sbjct:   63 GLSPDDLEKLPCYDFDGGEKDCAVCLESFRNGEKCRLLPTCRHSFHAQCVDYWLVKTPICPICRTRAC 130          
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A8B7C122 (uncharacterized protein LOC103706984 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7C122_PHODC)

HSP 1 Score: 74.3 bits (181), Expect = 1.350e-12
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 0
Query:   73 GACKTMIDKLPLEVVGKTQDDIESGLVTPVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICK 149
            GA ++ ID LP  V+    D I+          E CAICL     GD +RHL C H FH EC+D WL++R+LCPICK
Sbjct:  771 GASESQIDSLPQSVI--QSDSIK----------EACAICLEVPSTGDVIRHLPCLHKFHKECIDTWLKRRTLCPICK 835          
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A6I9SAX1 (uncharacterized protein LOC105059137 isoform X1 n=2 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9SAX1_ELAGV)

HSP 1 Score: 73.9 bits (180), Expect = 1.860e-12
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 0
Query:   73 GACKTMIDKLPLEVVGKTQDDIESGLVTPVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICK 149
            GA ++ ID LP   +    D IE          E CAICL     GD +RHL C H FH EC+D WL +R+LCPICK
Sbjct:  845 GASESQIDSLPQSAI--QSDSIE----------EACAICLEAPSAGDVIRHLPCLHKFHKECIDTWLRRRTLCPICK 909          
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A822XPG5 (RING-type domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XPG5_NELNU)

HSP 1 Score: 66.6 bits (161), Expect = 5.080e-12
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0
Query:  106 EKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKT 150
            E CAICL   + GD +RHL C H FH +C+D WL +++LCP+CK+
Sbjct:    8 EACAICLETPKTGDKIRHLPCLHKFHKDCIDPWLRRKTLCPVCKS 52          
BLAST of Ggra9892.t1 vs. uniprot
Match: U5D0F9 (RING-type domain-containing protein n=4 Tax=Amborella trichopoda TaxID=13333 RepID=U5D0F9_AMBTC)

HSP 1 Score: 72.0 bits (175), Expect = 8.720e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0
Query:   73 GACKTMIDKLPLEVVGKTQDDIESGLVTPVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKT 150
            GA  + I++LP+ ++  T   +E+           CAICL     GD+VRHL C H FH +C+D WL +R LCPICK+
Sbjct:  869 GATTSQINRLPVTLIQPTDTTVEA-----------CAICLEIPSAGDSVRHLPCLHRFHRDCIDSWLTRRPLCPICKS 935          
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A835PV35 (RING-type domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PV35_VANPL)

HSP 1 Score: 71.6 bits (174), Expect = 1.150e-11
Identity = 32/77 (41.56%), Postives = 41/77 (53.25%), Query Frame = 0
Query:   73 GACKTMIDKLPLEVVGKTQDDIESGLVTPVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICK 149
            GA  T I+ LPL V+     +            E CA+CL     GD +RHL C H FH EC+D WL ++ +CPICK
Sbjct:  672 GATDTQINSLPLSVIQNAASE------------EACAVCLETPSLGDTIRHLPCLHKFHKECIDTWLRRKKMCPICK 736          
BLAST of Ggra9892.t1 vs. uniprot
Match: A0A804KN28 ((wild Malaysian banana) hypothetical protein n=4 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KN28_MUSAM)

HSP 1 Score: 71.2 bits (173), Expect = 1.600e-11
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 0
Query:   63 DMLLGLFVPH----GACKTMIDKLPLEVVGKTQDDIESGLVTPVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKT 150
            +MLLGL   +    GA ++ I+ LP  V+ ++  ++E+           C ICL P   GD +RHL C H FH EC+D WL +++LCP+CK+
Sbjct:  771 EMLLGLDEDNHQHSGASESQINILPESVI-QSNGNVEA-----------CVICLEPPTVGDVIRHLPCLHKFHKECIDTWLRRKTLCPVCKS 850          
The following BLAST results are available for this feature:
BLAST of Ggra9892.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJU45.220e-8478.43E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
A0A2V3IFI04.220e-4148.68RING finger protein 44 n=1 Tax=Gracilariopsis chor... [more]
A0A0D2MUW86.630e-1354.00E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium ... [more]
RING-H2 finger protein ATL14-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E457B1.240e-1248.53RING-H2 finger protein ATL14-like n=1 Tax=Asparagu... [more]
A0A8B7C1221.350e-1246.75uncharacterized protein LOC103706984 n=1 Tax=Phoen... [more]
A0A6I9SAX11.860e-1246.75uncharacterized protein LOC105059137 isoform X1 n=... [more]
A0A822XPG55.080e-1253.33RING-type domain-containing protein n=1 Tax=Nelumb... [more]
U5D0F98.720e-1242.31RING-type domain-containing protein n=4 Tax=Ambore... [more]
A0A835PV351.150e-1141.56RING-type domain-containing protein n=1 Tax=Vanill... [more]
A0A804KN281.600e-1139.13(wild Malaysian banana) hypothetical protein n=4 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 108..148
e-value: 2.1E-7
score: 40.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 107..149
e-value: 2.5E-13
score: 50.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 108..149
score: 12.194218
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 70..152
e-value: 8.1E-19
score: 69.1
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 71..150
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 107..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:43484..44037 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9892.t1Ggra9892.t1Gracilaria gracilis GNS1m malemRNAtig00000009_pilon 43484..44037 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9892.t1 ID=Ggra9892.t1|Name=Ggra9892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MDAIVFDIFDCAPLPVPPPCATSTPPSHANSIQSLLDACSHALKSCLPRR
MHEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGKTQDDIESGLVT
PVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKT
HAC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD