Ggra9892.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9892.t1
Unique NameGgra9892.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:43484..44037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_53186
PFAMszf-RING_2
Max annot lvl2759|Eukaryota
KEGG koko:K19041,ko:K19045
Evalue1.22e-15
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9892Ggra9892Gracilaria gracilis GNS1m malegenetig00000009_pilon 43484..44037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9892.t1Ggra9892.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 43484..44037 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9892.t1.start1Ggra9892.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 43484..43486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9892.t1.CDS1Ggra9892.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 43484..43882 +
Ggra9892.t1.CDS2Ggra9892.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000009_pilon 43975..44037 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9892.t1.exon1Ggra9892.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 43484..43882 +
Ggra9892.t1.exon2Ggra9892.t1.exon2Gracilaria gracilis GNS1m maleexontig00000009_pilon 43975..44037 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9892.t1.intron1Ggra9892.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000009_pilon 43883..43974 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9892.t1.stop1Ggra9892.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 44035..44037 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9892.t1 ID=Ggra9892.t1|Name=Ggra9892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=154bp
MDAIVFDIFDCAPLPVPPPCATSTPPSHANSIQSLLDACSHALKSCLPRR
MHEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGKTQDDIESGLVT
PVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKT
HAC*
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spliced messenger RNA

>Ggra9892.t1 ID=Ggra9892.t1|Name=Ggra9892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000009_pilon:43484..44037+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCTATTGTGTTCGATATCTTTGATTGCGCCCCGCTCCCAGTTCC
ACCACCGTGCGCTACCTCCACTCCGCCATCCCACGCCAACAGCATTCAAT
CGCTGCTCGACGCCTGCTCACACGCCCTCAAATCCTGTCTGCCGAGACGG
ATGCACGAACCTACCGGACCGTTTACCTTGCTGCTCGATATGCTTCTGGG
GCTGTTTGTACCGCACGGGGCTTGCAAGACGATGATTGACAAGCTTCCGC
TCGAAGTTGTTGGCAAAACTCAAGACGATATTGAAAGTGGTCTCGTCACA
CCTGTGTCGCGCGGCGAGAAGTGCGCCATTTGTCTCGGTCCATACGAGGA
CGGCGATGCAGTTCGGCATCTAACCTGCAACCACGCCTTTCATGCCGAGT
GTGTCGATATCTGGCTGGAGAAGAGAAGTCTGTGTCCCATATGCAAAACA
CACGCCTGCTAG
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protein sequence of Ggra9892.t1

>Ggra9892.t1 ID=Ggra9892.t1|Name=Ggra9892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MDAIVFDIFDCAPLPVPPPCATSTPPSHANSIQSLLDACSHALKSCLPRR
MHEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGKTQDDIESGLVT
PVSRGEKCAICLGPYEDGDAVRHLTCNHAFHAECVDIWLEKRSLCPICKT
HAC*
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mRNA from alignment at tig00000009_pilon:43484..44037+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9892.t1 ID=Ggra9892.t1|Name=Ggra9892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp|location=Sequence derived from alignment at tig00000009_pilon:43484..44037+ (Gracilaria gracilis GNS1m male)
ATGGATGCTATTGTGTTCGATATCTTTGATTGCGCCCCGCTCCCAGTTCC
ACCACCGTGCGCTACCTCCACTCCGCCATCCCACGCCAACAGCATTCAAT
CGCTGCTCGACGCCTGCTCACACGCCCTCAAATCCTGTCTGCCGAGACGG
ATGCACGAACCTACCGGACCGTTTACCTTGCTGCTCGATATGCTTCTGGG
GCTGTTTGTACCGCACGGGGCTTGCAAGACGATGATTGACAAGCTTCCGC
TCGAAGTTGTTGGCAAAACTCAAGACGATATTGAAAGTGGTCTCGTCACA
CCTGTGTCGCGCGGCGAGAAGTGCGCCATTTGTCTCGGTCCATACGAGGA
CGGCGATGCAGTTCGGCATCTAACCTGCAACCACGCCTTTCATGCCGAGG
TACGTTTTCCAACTGCTTACTATGTTCCATCGATACGACTCGCCCAACCG
TCTTAATAACTTGTTTTCTTACATTTTCCTTTGTTACACAGTGTGTCGAT
ATCTGGCTGGAGAAGAGAAGTCTGTGTCCCATATGCAAAACACACGCCTG
CTAG
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Coding sequence (CDS) from alignment at tig00000009_pilon:43484..44037+

>Ggra9892.t1 ID=Ggra9892.t1|Name=Ggra9892.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00000009_pilon:43484..44037+ (Gracilaria gracilis GNS1m male)
ATGGATGCTATTGTGTTCGATATCTTTGATTGCGCCCCGCTCCCAGTTCC
ACCACCGTGCGCTACCTCCACTCCGCCATCCCACGCCAACAGCATTCAAT
CGCTGCTCGACGCCTGCTCACACGCCCTCAAATCCTGTCTGCCGAGACGG
ATGCACGAACCTACCGGACCGTTTACCTTGCTGCTCGATATGCTTCTGGG
GCTGTTTGTACCGCACGGGGCTTGCAAGACGATGATTGACAAGCTTCCGC
TCGAAGTTGTTGGCAAAACTCAAGACGATATTGAAAGTGGTCTCGTCACA
CCTGTGTCGCGCGGCGAGAAGTGCGCCATTTGTCTCGGTCCATACGAGGA
CGGCGATGCAGTTCGGCATCTAACCTGCAACCACGCCTTTCATGCCGAGT
GTGTCGATATCTGGCTGGAGAAGAGAAGTCTGTGTCCCATATGCAAAACA
CACGCCTGCTAG
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