Ggra9891.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9891.t1
Unique NameGgra9891.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Homology
BLAST of Ggra9891.t1 vs. uniprot
Match: A0A2V3ITP2 (Vacuolar protein sorting-associated protein 28-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITP2_9FLOR)

HSP 1 Score: 408 bits (1048), Expect = 6.540e-142
Identity = 211/277 (76.17%), Postives = 228/277 (82.31%), Query Frame = 0
Query:    1 MAARMPDSAYWQAQAPPAASVPPPASHKPANF-----------------TAEIPRPPPLSAPHTSLFSTKPPSGTAVKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKAGVPATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEFERAYND 260
            MA R+P S  W+AQ PPA S+P P+   P                       IP PPPL  PH SLFS +PPSGT VKLF DK++KEMYEDMSAVFSLLTATERLENIWARRGAIAQ+DYEQQCEKLIQQFRVLRTSTEKSIPN+DKFIAEY+CKASKARPRLKAGVPATV  V++TPKDLGKFVMRCT LFHYCISCI+MNQRAVNVLLPDLTSLMKTLARVPALG+NFEF  KIR WVEKLN MPAN++L+EQDAAQLKLDLD GYAEFE AYND
Sbjct:    1 MATRVPPSNVWEAQVPPAVSLPQPSHPHPXXXXXXXXHAQPLQPLYPQQVLHIPGPPPLQTPHMSLFSARPPSGTPVKLFADKSDKEMYEDMSAVFSLLTATERLENIWARRGAIAQHDYEQQCEKLIQQFRVLRTSTEKSIPNLDKFIAEYDCKASKARPRLKAGVPATVAIVTSTPKDLGKFVMRCTSLFHYCISCIEMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFAAKIRTWVEKLNAMPANDDLTEQDAAQLKLDLDTGYAEFESAYND 277          
BLAST of Ggra9891.t1 vs. uniprot
Match: R7QHR5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHR5_CHOCR)

HSP 1 Score: 247 bits (631), Expect = 4.370e-79
Identity = 131/217 (60.37%), Postives = 158/217 (72.81%), Query Frame = 0
Query:   48 SLFSTKPPSGTAVKLFTDKAEKEM----YEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKAGVPATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEFERAYND 260
            S+FS+ PP G  V+L+ DK ++E     YEDMSAVFS++TATERLENIWAR GAI+Q+DYE+QCE LIQQ++VL  ST + IP IDKFI EY+ KASKARPRL  G P TV      PK   KFV RCT LFH+  +CID NQ AV  LLPDL SLMKTL  + +L  +F F  ++  WVEKLN MPA+ EL+  DA+QLKLDLDNGYAE E A ++
Sbjct:   25 SVFSSAPPRGEPVRLYRDKRDEERNTDKYEDMSAVFSVITATERLENIWARWGAISQDDYERQCELLIQQYKVLTASTAEFIPKIDKFIHEYDIKASKARPRLACGYPVTVKGPKE-PKHQNKFVFRCTSLFHHLGTCIDTNQVAVGFLLPDLISLMKTLKSISSLPQDFVFNARVEFWVEKLNAMPASFELTFDDASQLKLDLDNGYAELEAAISN 240          
BLAST of Ggra9891.t1 vs. uniprot
Match: D8RLH9 (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RLH9_SELML)

HSP 1 Score: 130 bits (327), Expect = 1.870e-33
Identity = 79/201 (39.30%), Postives = 117/201 (58.21%), Query Frame = 0
Query:   60 VKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLK-AGVPATVPNVSNTPK--DLGKF---VMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEF 254
            VKL++DK E+EM+E+ + +F+++  TE+LE  + R  A++  DYE  C KLI QFR L+ +    +P++D+F+A Y+     A  RL  +G+PATV + S T    D G     V  C   +   +  + +N  AV+ + P L  L+  L RVP L  +FE   K R W+ KLN M A++EL+EQ A QL  DLD+ Y  F
Sbjct:   24 VKLWSDKREREMFENFADLFAIIKTTEKLEKAYVR-DAMSARDYEPWCTKLIAQFRTLKNALRDVVPDVDRFMAAYKMDCPAAHNRLLVSGIPATVEHKSATSSSFDAGATAVAVAECVQHYITAMDSLKLNMVAVDQIHPLLLDLLSALNRVPQLTADFEGKVKTRDWIAKLNKMGASDELTEQQARQLLFDLDSSYNAF 223          
BLAST of Ggra9891.t1 vs. uniprot
Match: A0A2R6W1H5 (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W1H5_MARPO)

HSP 1 Score: 126 bits (316), Expect = 5.000e-32
Identity = 76/198 (38.38%), Postives = 120/198 (60.61%), Query Frame = 0
Query:   60 VKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLK-AGVPATVPNVSNTPKDLGKFVMRCTMLFHY--CISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEF 254
            VKL+TDK E+EMY++ + +F+++  TE+LE  + R   I+  +YE  C KLI QFR L+T+ + ++P++++F+  Y+     A  RL  +G+PATV + S +  D G  V     + HY   +  + +N  AV+ + P L+ L+ +L+RVP L  +FE   K R W+  LN M A +EL+EQ A QL  DL++ Y  F
Sbjct:    9 VKLWTDKREREMYDNFADLFAIIKTTEKLEKAYVR-DVISAKEYEPACAKLIAQFRTLKTTLKDTVPDVERFMEAYKMDCPAAANRLIISGIPATVEHKSAS-SDSGTAVAVAECVQHYITAMDSLKLNMVAVDQVHPLLSDLVASLSRVPQLSPDFEGKVKGREWITILNKMGAADELNEQQARQLLFDLESSYNAF 204          
BLAST of Ggra9891.t1 vs. uniprot
Match: A0A0U9HKA5 (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKA5_KLENI)

HSP 1 Score: 125 bits (313), Expect = 1.320e-31
Identity = 74/204 (36.27%), Postives = 124/204 (60.78%), Query Frame = 0
Query:   56 SGTAVKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEY--ECKASKARPRLKAGVPATVPNVSNTPKDLGKFVMRCTMLFHYCISCID---MNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEF 254
            +GT +KL+ DKAE+EMYE+ + +++++  TE+LE  + R   I+  +YE  C KLI QFR LRT+ + S+P++++F++ Y  EC A+  R  L++G+PATV +    P +     M       + I+ +D   ++  AV+ + P L+ L+ ++ RVP L  +FE   K + W+ +L  M A++EL+E  A QL  DL++ Y  F
Sbjct:    2 TGTELKLWNDKAEREMYENFADLYAIIKTTEKLEKAYVR-DVISAKEYEPACLKLIAQFRTLRTTLKDSVPDVERFMSAYKLECPAAVNR-LLQSGLPATVEHGRPVPGEGPSSAMAVAETVQHFITAMDSLKLSMVAVDQVYPLLSDLVSSMNRVPQLPPDFEGKVKGKDWISRLAKMSASDELNEGQARQLLFDLESSYTAF 203          
BLAST of Ggra9891.t1 vs. uniprot
Match: I0Z9P7 (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z9P7_COCSC)

HSP 1 Score: 125 bits (313), Expect = 1.510e-31
Identity = 72/201 (35.82%), Postives = 118/201 (58.71%), Query Frame = 0
Query:   59 AVKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRL-KAGVPATV----PNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEF 254
            A+KL++ K E+EMYE+ + +F+++  TE+LE  + R  AI+  DYE  C KLI QFR L  + + ++P+++KF+A+Y  +   A  RL  +G+PATV    P   + P  +   V      F   +  + +N  AV+ L P L  LM+++ +V  L  +F    K++ W+ KL+ MPA++EL E D  QL  +L++ Y +F
Sbjct:    9 AIKLYSSKKEQEMYENFADLFAIVKTTEKLERAYVR-DAISAKDYEPLCAKLIAQFRTLWETLKDTVPDVEKFMADYNMQCPMAAKRLIYSGMPATVEHGKPRCPSHPSSVA--VAETVQHFITAMDSLKLNMVAVDQLYPVLNDLMQSMNKVVQLPGDFAGKVKVKAWITKLHNMPASKELEEADVRQLLFELESSYNDF 206          
BLAST of Ggra9891.t1 vs. uniprot
Match: A0A448Z4F2 (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4F2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.560e-30
Identity = 67/199 (33.67%), Postives = 116/199 (58.29%), Query Frame = 0
Query:   60 VKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVL-RTSTEKSIPNIDKFIAEYECKASKARPRL-KAGVPATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEFER 256
            V+L++   E++ Y+D +A+++++ ATE LE  ++R  AI Q +Y Q+C KLI QFR+  + +  K     + F+  Y+    +A  RL   GVP  +   +    D+   V +    F   +  + +  R V+ L P L+ LM +L ++P + ++FE   K++ W++KLNGM A +E++E+D+ QL +DLD+ Y EF R
Sbjct:   12 VELYSSSRERQAYDDQAALYAIILATEHLERAYSR-DAITQQEYVQECNKLISQFRLAEKAALPKLNMTTESFMELYQMDCPRATERLLNMGVPEPIRTATGQTADVAVTVAKTVENFITAMDAVKIETRFVDELQPLLSDLMDSLTKLPDIPDDFEPNHKVKKWLQKLNGMRAIDEITEEDSRQLSMDLDSAYVEFTR 209          
BLAST of Ggra9891.t1 vs. uniprot
Match: A0A7S4J7U8 (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J7U8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.230e-29
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 0
Query:   60 VKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRL-KAGVPATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEFER 256
            ++LF    E+E Y++++ +++++ ATE LE  +AR  AI Q +Y  +C KLI QFR+   +        + F+  Y+    +A  RL K GVP  +         +   V      F   +  + + QRAV+ L P L+ LM  L R+P   ++FE   KI  W++KLN M A E++ E DA QL LDLD+ YAEF R
Sbjct:   26 IELFESSKEREAYDNLADLYTIILATEHLERSYAR-DAITQKEYTTECNKLISQFRLAEKAALGKTMTTETFMNLYQMDCPRATERLLKMGVPEQIKTSDAAGHHVAVTVAETVQHFITTMDAVKLEQRAVDELQPLLSDLMHALTRLPETPDDFEPNRKISKWLQKLNAMRAVEQIDEDDARQLYLDLDSAYAEFTR 222          
BLAST of Ggra9891.t1 vs. uniprot
Match: A0A6V2IMC3 (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IMC3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.790e-29
Identity = 68/198 (34.34%), Postives = 109/198 (55.05%), Query Frame = 0
Query:   60 VKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKA-GVPATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEFER 256
            ++LF    E+E YE+++ +++++ ATE LE  +AR  AI Q +Y  +C KLI QFR+   +   S    + F+  Y+    +AR RL   GVP  +    ++   +   V      F   +  + + QRAV+ L P L+ LM  L ++P   N+FE   K++ W++ LN M A +++ E DA QL  DLD+ YA+F R
Sbjct:   18 IELFESSKEREAYENLADLYTVIVATEHLERAYAR-DAITQQEYTSECNKLISQFRLAEKAALGSSMTTETFMQLYQMDCPRARERLLIMGVPEQIKTSDDSGHHVAVTVAETVQHFITAMDAVKLEQRAVDELQPLLSDLMDALTQLPETPNDFEPNKKVQTWLQTLNSMRAVDQIDEDDARQLYHDLDSAYADFTR 214          
BLAST of Ggra9891.t1 vs. uniprot
Match: A0A834SMB3 (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834SMB3_9FABA)

HSP 1 Score: 119 bits (297), Expect = 4.560e-29
Identity = 69/199 (34.67%), Postives = 117/199 (58.79%), Query Frame = 0
Query:   60 VKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLK-AGVPATVPN---VSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNGYAEF 254
            VKL++DK E+EMYE+ + +++++ ATE+LE  + R   I+  +YE +C+KLI  F+ L +S + ++PNI++F   Y+     A  RL  +GVPATV +    +++       V  C   F   +  + +N  AV+ + P L+ L  +L ++  L  +FE   K++ W+ +L+ M A +EL+EQ A QL  DL++ Y  F
Sbjct:   20 VKLWSDKREREMYENFAELYAIIKATEKLEKAYVR-DVISSQEYEVECQKLIAHFKTLASSLKDTVPNIERFADTYKMDCPAAINRLLVSGVPATVEHRAAAASSASTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLYGSLNKLGILPPDFEGKTKMKEWIARLSKMGAADELTEQQARQLHFDLESSYNSF 217          
The following BLAST results are available for this feature:
BLAST of Ggra9891.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITP26.540e-14276.17Vacuolar protein sorting-associated protein 28-lik... [more]
R7QHR54.370e-7960.37Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
D8RLH91.870e-3339.30Vacuolar protein sorting-associated protein 28 hom... [more]
A0A2R6W1H55.000e-3238.38Vacuolar protein sorting-associated protein 28 hom... [more]
A0A0U9HKA51.320e-3136.27Vacuolar protein sorting-associated protein 28 hom... [more]
I0Z9P71.510e-3135.82Vacuolar protein sorting-associated protein 28 hom... [more]
A0A448Z4F21.560e-3033.67Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7S4J7U81.230e-2935.86Vacuolar protein sorting-associated protein 28 hom... [more]
A0A6V2IMC32.790e-2934.34Vacuolar protein sorting-associated protein 28 hom... [more]
A0A834SMB34.560e-2934.67Vacuolar protein sorting-associated protein 28 hom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007143Vacuolar protein sorting-associated Vps28PFAMPF03997VPS28coord: 75..256
e-value: 5.4E-40
score: 137.2
IPR007143Vacuolar protein sorting-associated Vps28PANTHERPTHR12937VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28coord: 59..259
IPR038358VPS28, N-terminal domain superfamilyGENE3D1.20.1440.200coord: 60..154
e-value: 7.9E-22
score: 79.5
IPR037206VPS28, C-terminal domain superfamilyGENE3D1.20.120.1130coord: 161..258
e-value: 1.3E-21
score: 78.4
IPR037206VPS28, C-terminal domain superfamilySUPERFAMILY140427VPS28 C-terminal domain-likecoord: 165..256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
IPR017899Vacuolar protein sorting-associated, VPS28, C-terminalPROSITEPS51310VPS28_Ccoord: 163..259
score: 19.879288
IPR017898Vacuolar protein sorting-associated, VPS28, N-terminalPROSITEPS51313VPS28_Ncoord: 49..156
score: 10.457686
IPR037202ESCRT assembly domainSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 59..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:40735..41517 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9891.t1Ggra9891.t1Gracilaria gracilis GNS1m malemRNAtig00000009_pilon 40735..41517 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9891.t1 ID=Ggra9891.t1|Name=Ggra9891.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MAARMPDSAYWQAQAPPAASVPPPASHKPANFTAEIPRPPPLSAPHTSLF
STKPPSGTAVKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQ
NDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKAGV
PATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLM
KTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNG
YAEFERAYND*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007143Vps28
IPR038358VPS28_N_sf
IPR037206VPS28_C_sf
IPR017899VPS28_C
IPR017898VPS28_N
IPR037202ESCRT_assembly_dom