Ggra9891.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9891.t1
Unique NameGgra9891.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:40735..41517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ26622
PFAMsVPS28
Max annot lvl35493|Streptophyta
KEGG koko:K12184
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042886,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:1901564,GO:1901565,GO:1901575
Evalue3.53e-33
EggNOG OGsKOG3284@1|root,KOG3284@2759|Eukaryota,37J1D@33090|Viridiplantae,3G92Z@35493|Streptophyta
DescriptionComponent of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9891Ggra9891Gracilaria gracilis GNS1m malegenetig00000009_pilon 40735..41517 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9891.t1.start1Ggra9891.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 40735..40737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9891.t1.CDS1Ggra9891.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 40735..41517 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9891.t1.exon1Ggra9891.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 40735..41517 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9891.t1.stop1Ggra9891.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 41515..41517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9891.t1Ggra9891.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 40735..41517 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9891.t1 ID=Ggra9891.t1|Name=Ggra9891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MAARMPDSAYWQAQAPPAASVPPPASHKPANFTAEIPRPPPLSAPHTSLF
STKPPSGTAVKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQ
NDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKAGV
PATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLM
KTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNG
YAEFERAYND*
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spliced messenger RNA

>Ggra9891.t1 ID=Ggra9891.t1|Name=Ggra9891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000009_pilon:40735..41517+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCGAATGCCCGACTCTGCGTACTGGCAGGcgcaggcgccgcc
ggccgcctccgtgccgccgccgGCTTCGCACAAGCCCGCCAACTTCACGG
CTGAAATCCCGCGCCCGCCGCCGCTTTCCGCCCCGCACACGTCGTTGTTC
TCCACCAAGCCGCCCTCCGGCACCGCCGTCAAGTTGTTTACCGACAAGGC
CGAGAAGGAGATGTACGAGGATATGTCAGCCGTCTTCAGTCTGCTCACCG
CCACCGAACGGCTTGAGAATATCTGGGCCAGACGCGGCGCCATTGCGCAG
AACGATTATGAACAGCAGTGCGAAAAACTCATCCAGCAATTTCGCGTGCT
ACGTACTTCTACAGAGAAATCCATCCCCAACATTGACAAGTTCATTGCCG
AGTACGAGTGCAAGGCGAGCAAAGCGCGCCCAAGGTTGAAGGCCGGCGTT
CCGGCCACCGTGCCCAACGTTAGTAACACCCCGAAGGACCTTGGCAAGTT
TGTCATGCGTTGTACCATGCTGTTCCATTATTGCATATCGTGTATTGATA
TGAATCAGCGTGCTGTCAATGTGCTTTTGCCAGATTTGACATCGCTCATG
AAAACACTGGCCAGGGTGCCGGCGCTCGGAAACAATTTTGAGTTTGGTGA
TAAGATTCGTATGTGGGTTGAGAAGCTCAATGGAATGCCTGCCAATGAAG
AGTTGTCAGAGCAAGATGCGGCGCAGCTCAAGCTCGACTTGGACAACGGC
TATGCCGAGTTTGAACGCGCCTACAACGACTAA
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protein sequence of Ggra9891.t1

>Ggra9891.t1 ID=Ggra9891.t1|Name=Ggra9891.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MAARMPDSAYWQAQAPPAASVPPPASHKPANFTAEIPRPPPLSAPHTSLF
STKPPSGTAVKLFTDKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQ
NDYEQQCEKLIQQFRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKAGV
PATVPNVSNTPKDLGKFVMRCTMLFHYCISCIDMNQRAVNVLLPDLTSLM
KTLARVPALGNNFEFGDKIRMWVEKLNGMPANEELSEQDAAQLKLDLDNG
YAEFERAYND*
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mRNA from alignment at tig00000009_pilon:40735..41517+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9891.t1 ID=Ggra9891.t1|Name=Ggra9891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000009_pilon:40735..41517+ (Gracilaria gracilis GNS1m male)
ATGGCCGCGCGAATGCCCGACTCTGCGTACTGGCAGGcgcaggcgccgcc
ggccgcctccgtgccgccgccgGCTTCGCACAAGCCCGCCAACTTCACGG
CTGAAATCCCGCGCCCGCCGCCGCTTTCCGCCCCGCACACGTCGTTGTTC
TCCACCAAGCCGCCCTCCGGCACCGCCGTCAAGTTGTTTACCGACAAGGC
CGAGAAGGAGATGTACGAGGATATGTCAGCCGTCTTCAGTCTGCTCACCG
CCACCGAACGGCTTGAGAATATCTGGGCCAGACGCGGCGCCATTGCGCAG
AACGATTATGAACAGCAGTGCGAAAAACTCATCCAGCAATTTCGCGTGCT
ACGTACTTCTACAGAGAAATCCATCCCCAACATTGACAAGTTCATTGCCG
AGTACGAGTGCAAGGCGAGCAAAGCGCGCCCAAGGTTGAAGGCCGGCGTT
CCGGCCACCGTGCCCAACGTTAGTAACACCCCGAAGGACCTTGGCAAGTT
TGTCATGCGTTGTACCATGCTGTTCCATTATTGCATATCGTGTATTGATA
TGAATCAGCGTGCTGTCAATGTGCTTTTGCCAGATTTGACATCGCTCATG
AAAACACTGGCCAGGGTGCCGGCGCTCGGAAACAATTTTGAGTTTGGTGA
TAAGATTCGTATGTGGGTTGAGAAGCTCAATGGAATGCCTGCCAATGAAG
AGTTGTCAGAGCAAGATGCGGCGCAGCTCAAGCTCGACTTGGACAACGGC
TATGCCGAGTTTGAACGCGCCTACAACGACTAA
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Coding sequence (CDS) from alignment at tig00000009_pilon:40735..41517+

>Ggra9891.t1 ID=Ggra9891.t1|Name=Ggra9891.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000009_pilon:40735..41517+ (Gracilaria gracilis GNS1m male)
ATGGCCGCGCGAATGCCCGACTCTGCGTACTGGCAGGcgcaggcgccgcc
ggccgcctccgtgccgccgccgGCTTCGCACAAGCCCGCCAACTTCACGG
CTGAAATCCCGCGCCCGCCGCCGCTTTCCGCCCCGCACACGTCGTTGTTC
TCCACCAAGCCGCCCTCCGGCACCGCCGTCAAGTTGTTTACCGACAAGGC
CGAGAAGGAGATGTACGAGGATATGTCAGCCGTCTTCAGTCTGCTCACCG
CCACCGAACGGCTTGAGAATATCTGGGCCAGACGCGGCGCCATTGCGCAG
AACGATTATGAACAGCAGTGCGAAAAACTCATCCAGCAATTTCGCGTGCT
ACGTACTTCTACAGAGAAATCCATCCCCAACATTGACAAGTTCATTGCCG
AGTACGAGTGCAAGGCGAGCAAAGCGCGCCCAAGGTTGAAGGCCGGCGTT
CCGGCCACCGTGCCCAACGTTAGTAACACCCCGAAGGACCTTGGCAAGTT
TGTCATGCGTTGTACCATGCTGTTCCATTATTGCATATCGTGTATTGATA
TGAATCAGCGTGCTGTCAATGTGCTTTTGCCAGATTTGACATCGCTCATG
AAAACACTGGCCAGGGTGCCGGCGCTCGGAAACAATTTTGAGTTTGGTGA
TAAGATTCGTATGTGGGTTGAGAAGCTCAATGGAATGCCTGCCAATGAAG
AGTTGTCAGAGCAAGATGCGGCGCAGCTCAAGCTCGACTTGGACAACGGC
TATGCCGAGTTTGAACGCGCCTACAACGACTAA
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