Ggra9889.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9889.t1
Unique NameGgra9889.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Homology
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A2V3ITR4 (Exosome complex component RRP4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITR4_9FLOR)

HSP 1 Score: 487 bits (1254), Expect = 3.740e-172
Identity = 245/285 (85.96%), Postives = 268/285 (94.04%), Query Frame = 0
Query:    6 ASSFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAA 290
            ++SFTI RPKR+SDN + V+RL+HVPIT+PGS IPTEDHSVRARGTLLS  ESGNVLTATRAGVISRVNKLVMVMPLR+RYIPETGDVVVGRVVEI NKRYK+DVNATKHAFLLLTAINLPGGV RRRNQEDELNMR+YFKEGDLVSAEVQE RKDG+VALHTRSLRYGKL+ GQLV VQSELVKRAKKHFHELPCGVHTILGNNG++FLS  +KG +S+EMRRRIARV+NSILALDSEFIAIGPDTIMDVY+TSL N VEVKDMC PDV++SIC+GARSMR+AA
Sbjct:    8 SASFTILRPKRLSDNAEPVSRLSHVPITSPGSVIPTEDHSVRARGTLLSCGESGNVLTATRAGVISRVNKLVMVMPLRSRYIPETGDVVVGRVVEIANKRYKMDVNATKHAFLLLTAINLPGGVHRRRNQEDELNMRQYFKEGDLVSAEVQERRKDGSVALHTRSLRYGKLSAGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGFIFLSQTRKGAISLEMRRRIARVANSILALDSEFIAIGPDTIMDVYQTSLANGVEVKDMCTPDVVKSICVGARSMREAA 292          
BLAST of Ggra9889.t1 vs. uniprot
Match: R7Q340 (KH_dom_type_1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q340_CHOCR)

HSP 1 Score: 365 bits (936), Expect = 7.520e-124
Identity = 189/286 (66.08%), Postives = 225/286 (78.67%), Query Frame = 0
Query:    8 SFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQK---GPLSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAA 290
            +F+I RP   S    A   L+H+PIT PGS+IPTED SVRARGTLLS+T S  VLTAT AGVI+RVNKLVMV PLRA+YIPETGDVV+GRV ++  +R+++DVNA +HA LLL+A+NLPGG+QRRR  +DELNMR +F EGDLVSAEVQE   DG VALHTRSLRYGKL+GG  V VQ ELVKRAKKHFH L CGVH ILGNNGY+FL+   +   G  + EMR+ +ARV N++LALD+EFIAIGPDTIM VY  S+   VE++DM +PD+   IC GARSMR AA
Sbjct:    5 TFSIVRPPPPST---ASAPLSHIPITIPGSTIPTEDLSVRARGTLLSTTGSTRVLTATVAGVITRVNKLVMVRPLRAKYIPETGDVVIGRVTDLAGRRWRLDVNAARHAILLLSAVNLPGGIQRRRTYQDELNMRAFFTEGDLVSAEVQEQWDDGCVALHTRSLRYGKLSGGTFVPVQPELVKRAKKHFHRLDCGVHAILGNNGYIFLAERAEKEGGATTPEMRKMVARVRNAVLALDTEFIAIGPDTIMSVYDASIEEGVELRDMTRPDITAKICEGARSMRAAA 287          
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A2V3IQJ5 (Exosome complex component RRP4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQJ5_9FLOR)

HSP 1 Score: 354 bits (908), Expect = 9.760e-119
Identity = 193/289 (66.78%), Postives = 226/289 (78.20%), Query Frame = 0
Query:    6 ASSFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYG----KLAGGQLVMVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAA 290
            ++SFTI RPKR+SDN +AV+RL+HVPIT+PGS I TEDHSVR R TLLS  ESGNVLTATRAG ISRVNKLVMV+PL +RYI ETGDVV GRVVEI +KRYK+DVNATK AFLLLTAI LPGGV RRRNQEDELNMR+Y     ++ + ++    + T A  +    YG     + GGQLV +QSELVKRAKKHFHELPCGVH  L +NG+VFLS  +K  + +++  RI RVSN+ILALDSEF AIGPDTIM  Y TS  N +EVKDMC PDV++ I MGARSMR+AA
Sbjct:    8 SASFTILRPKRLSDNAEAVSRLSHVPITSPGSVILTEDHSVRVRRTLLSCGESGNVLTATRAGFISRVNKLVMVVPLCSRYILETGDVVGGRVVEIASKRYKMDVNATKLAFLLLTAIKLPGGVHRRRNQEDELNMREYCISKRVIWSVLKFRNDEKTAASPSTRECYGIESCPVDGGQLVTLQSELVKRAKKHFHELPCGVHMTLRDNGFVFLSQTRKNAILLQIWWRIGRVSNNILALDSEFNAIGPDTIMYAYETSPANGMEVKDMCTPDVVKIIGMGARSMREAA 296          
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A2V3IW84 (Exosome complex component RRP4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW84_9FLOR)

HSP 1 Score: 349 bits (896), Expect = 6.450e-117
Identity = 193/285 (67.72%), Postives = 215/285 (75.44%), Query Frame = 0
Query:    6 ASSFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAA 290
            ++SFTI RPKR+SDN +AV+RL+HVPIT+PGS I  EDHSVRAR TLLS  ES NVLTAT AGVISRVNKLVMVMPLR+RYI ETG VV GRVVEI +KRYK+DVNATK AFLLLTAI LPG V RRRNQEDELNMR+YFKEGDL                              LV +QSELVKRAKKHFHELPCGVH  L NNG+VFLS  +K  + +E+  RIARVSN+ILALDSEF  IGPDTIM  Y TSL N +EVKDMC PDV++ I MGAR MR+AA
Sbjct:    8 SASFTILRPKRLSDNAEAVSRLSHVPITSPGSVILAEDHSVRARRTLLSCGESENVLTATHAGVISRVNKLVMVMPLRSRYILETGVVVGGRVVEIASKRYKMDVNATKIAFLLLTAIKLPGNVHRRRNQEDELNMREYFKEGDL------------------------------LVTLQSELVKRAKKHFHELPCGVHMTLHNNGFVFLSQTRKDAILLEIWWRIARVSNNILALDSEFNEIGPDTIMYAYETSLANGMEVKDMCTPDVVKIIGMGARPMREAA 262          
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A2V3IDP5 (Exosome complex component rrp4 n=5 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDP5_9FLOR)

HSP 1 Score: 264 bits (674), Expect = 2.300e-85
Identity = 139/175 (79.43%), Postives = 156/175 (89.14%), Query Frame = 0
Query:    6 ASSFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQ 180
            ++SFTI RPKR+SDN +AV+RL+HVPIT+PGS I TEDHSVRAR TLLS  ESGNVLTATRAGVISRVNKLVMVMPLR+ YI ETGDVV GRVVEI +K YK+DVNATK AFLLLTAI LPGGV+RRRNQEDE+NMR+ F+EGDLVSAEVQE RKDG+VALH R LRY KL+GG+
Sbjct:    8 SASFTILRPKRLSDNAEAVSRLSHVPITSPGSVILTEDHSVRARRTLLSCGESGNVLTATRAGVISRVNKLVMVMPLRSPYILETGDVVGGRVVEISSKLYKMDVNATKLAFLLLTAIKLPGGVRRRRNQEDEINMRESFREGDLVSAEVQERRKDGSVALHARMLRYRKLSGGR 182          
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A1X6NNN7 (KH_dom_type_1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNN7_PORUM)

HSP 1 Score: 251 bits (642), Expect = 2.910e-78
Identity = 153/335 (45.67%), Postives = 192/335 (57.31%), Query Frame = 0
Query:   13 RPKRVSDNTDAV-------NRLAHVPITAPGSSIPTEDHSVRARGTLLSST------------------ESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELPCGVHTILGNNGYVFLS-------------SMQKGP-------------------LSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAA 290
            RP R  + T AV       + L+HVP+   G  I  E   +R  GT L++                   + G  L AT  GV+ RVN+LV V PLR+RY P+ GDVVV RVV+I  KR++ DV   +HA L L+A+NLPGGVQRRR   DE NMR+ F+EGDL+SAEVQE R DG +ALHTRSL+YGKL GG LV+    LVKR+KKHFH L CGV  ILGNNGY++LS             +M++                     L VE+R  +ARV N+I ALD +F+AI   TIMDV+  S T  V+V DM +P V+  I   AR  R  A
Sbjct:   30 RPARAMEVTRAVRPPPRSTDHLSHVPVVVTGDGIAVEPGFLRGHGTQLTAAGVAXXXXXXXXXXXXXTPDDGRALRATLTGVVKRVNQLVAVAPLRSRYAPQVGDVVVARVVDIAAKRWRCDVAGQQHAALALSAVNLPGGVQRRRTAADERNMRELFEEGDLLSAEVQELRHDGGIALHTRSLKYGKLVGGVLVVASPALVKRSKKHFHLLGCGVWAILGNNGYIWLSPTDPAGGRGAARDAMEEADESDGGAADGGDAAAPVDAELGVEVRLTLARVRNAIAALDQQFVAIHAATIMDVFDASETAGVDVADMSRPAVVELITATARERRVVA 364          
BLAST of Ggra9889.t1 vs. uniprot
Match: M2XZF0 (Ribosomal RNA-processing protein 4 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XZF0_GALSU)

HSP 1 Score: 243 bits (620), Expect = 8.530e-76
Identity = 126/272 (46.32%), Postives = 178/272 (65.44%), Query Frame = 0
Query:   34 APGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELPCGVHTILGNNGYV-----------------FLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRD 288
            APG  I +++  VR  GT++     G  LT+T AG++ RVNKLV V+P+RARY  E GDV+VGR+ +I ++R+K+DVN+ + A LLL+A+NLPGGVQRRR  EDEL MR++F + DL+SAEVQE ++DG + LHTRSL+YGKL  G  + V  +LVKR+KKHFH L CGVH ILG+NGYV                 F    +    ++E R  + RV NSI  LD  F++I P+TIM +Y  ++   + V+ M +PD++  I    ++ ++
Sbjct:   32 APGDDILSQESVVRGHGTMV----QGTRLTSTVAGIVERVNKLVAVLPIRARYSAEVGDVIVGRIRDIVSRRWKVDVNSRQDAVLLLSAVNLPGGVQRRRTYEDELKMREFFDQDDLISAEVQELKQDGLIMLHTRSLKYGKLENGIFISVTPQLVKRSKKHFHRLSCGVHIILGDNGYVWIYVDDAAYGEDEEEANFSKRRENDKSNLEQRLSLIRVRNSICILDLYFLSIQPETIMLIYEETIRRNIPVQHMLRPDIINDIYRTVKNTKE 299          
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A3P3YCJ4 (Ribosomal RNA-processing protein 4 n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YCJ4_PLABS)

HSP 1 Score: 235 bits (599), Expect = 1.550e-72
Identity = 130/274 (47.45%), Postives = 174/274 (63.50%), Query Frame = 0
Query:   14 PKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELP-CGVHTILGNNGYVFLSSMQKGP---LSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGA 283
            P R    T ++  L   P  +PG  I TE   +   GT L   E    L AT AG + +VNKL+ V PL  RY  + GDVV+GRV ++G+KR+K+D+N+ +   L+L++I+LPGGVQRRR QED L MR++F+EGDL+SAEVQ    DG VALHTRS +YGKL  GQ V+V+  LVKR K+HF  LP C V  ILGNNGY++++    G     S E R+++ARV  SI+ALD  F+AI PD++MDVY  S+   V   D+   D +  +   A
Sbjct:   29 PCRTLYRTMSIRSLHANPFVSPGEVITTESGFLWGHGTKLG--EEDKQLRATVAGFVEQVNKLLTVRPLTQRYAGDIGDVVIGRVTQVGDKRWKVDINSRQDGILMLSSIHLPGGVQRRRTQEDSLQMREFFEEGDLISAEVQNFYHDGAVALHTRSSKYGKLNRGQFVVVRQALVKRCKQHFVTLPDCNVDIILGNNGYIWITESSDGSGAGESAERRQQMARVRQSIVALDRMFVAIFPDSVMDVYHDSIDLGVSPADITHRDYIHRVTQKA 300          
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A0H5R9W4 (Ribosomal RNA-processing protein 4 (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R9W4_9EUKA)

HSP 1 Score: 220 bits (561), Expect = 2.870e-67
Identity = 121/245 (49.39%), Postives = 156/245 (63.67%), Query Frame = 0
Query:   31 PITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELP-CGVHTILGNNGYVFLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPD 274
            P  APG  I TE   +   GT L   E+  +L A+ AG + +VNKL+ V PL  RY  E GDV+VGRVV IG+KR+++D+N+ +   L+L+AI+LPGGVQRRR  ED L MR  F EGDL+SAEVQ    DG +ALHTR+ +YG L  G  V+V+  LVKR K+HF  LP   V  I GNNGY+++      P S E   R+ARV   I+ALD  F++I PDT+MDVY  SL   V   ++  PD
Sbjct:   13 PFVAPGDVITTESGFLWGHGTKLD--ETNKLLRASVAGFVEQVNKLLTVRPLTQRYSGEIGDVIVGRVVGIGDKRWRLDINSRQDGVLMLSAIHLPGGVQRRRTDEDSLQMRSVFDEGDLISAEVQSFYADGAIALHTRTSKYGLLGKGMFVVVRQSLVKRCKQHFVRLPQVEVDVIFGNNGYIWIGEGDS-PASAEQLERMARVRRCIVALDRMFVSIFPDTVMDVYGDSLEMGVPASEITHPD 254          
BLAST of Ggra9889.t1 vs. uniprot
Match: A0A0L0HQ67 (Ribosomal RNA-processing protein 4 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HQ67_SPIPD)

HSP 1 Score: 220 bits (561), Expect = 7.150e-67
Identity = 125/279 (44.80%), Postives = 171/279 (61.29%), Query Frame = 0
Query:   32 ITAPGSSIPTEDHSVRARGTLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSM-----------------QKGPLSVEMRRRIARVSNSILALDSEFIAIGPDTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAAEVE 293
            I  PG  +  +   +R  GT    TE  + L A+ AGV+ RVNKL+ V PLR RY  E GDVVVGR+ E+G +R+K+D+NA + A LLL+++NLPGGVQRR+ + DEL MR +F EGD++SAEVQ   +DG  +LHTRS++YGKL  G LV+V S LVKR K HF  LPCGV  ILG NGY++++                   +  P+S   R+ IARV +SI+AL      I    I+  +  S+ + V  KDM KPD+ + I + AR+    A ++
Sbjct:   31 IVTPGEVVTRDTAFMRGHGTY---TED-DALVASMAGVVDRVNKLISVRPLRTRYNGEIGDVVVGRITEVGPRRWKVDINARQDAVLLLSSVNLPGGVQRRKTESDELQMRSFFGEGDMLSAEVQAFFQDGAASLHTRSIKYGKLRNGSLVIVPSALVKRTKSHFATLPCGVDVILGLNGYIWVAKHVAISPEIVNQPDALYHNENEPISDAERQTIARVCSSIVALSRHNNFINDTMIVYTFEASMGHPV--KDMLKPDICQQIVLAARAQFREASLQ 303          
The following BLAST results are available for this feature:
BLAST of Ggra9889.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITR43.740e-17285.96Exosome complex component RRP4 n=1 Tax=Gracilariop... [more]
R7Q3407.520e-12466.08KH_dom_type_1 domain-containing protein n=1 Tax=Ch... [more]
A0A2V3IQJ59.760e-11966.78Exosome complex component RRP4 n=1 Tax=Gracilariop... [more]
A0A2V3IW846.450e-11767.72Exosome complex component RRP4 n=1 Tax=Gracilariop... [more]
A0A2V3IDP52.300e-8579.43Exosome complex component rrp4 n=5 Tax=Gracilariop... [more]
A0A1X6NNN72.910e-7845.67KH_dom_type_1 domain-containing protein n=1 Tax=Po... [more]
M2XZF08.530e-7646.32Ribosomal RNA-processing protein 4 n=1 Tax=Galdier... [more]
A0A3P3YCJ41.550e-7247.45Ribosomal RNA-processing protein 4 n=2 Tax=Plasmod... [more]
A0A0H5R9W42.870e-6749.39Ribosomal RNA-processing protein 4 (Fragment) n=1 ... [more]
A0A0L0HQ677.150e-6744.80Ribosomal RNA-processing protein 4 n=2 Tax=Spizell... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 89..169
e-value: 0.0038
score: 26.5
NoneNo IPR availableGENE3D2.40.50.140coord: 87..177
e-value: 7.3E-21
score: 75.9
NoneNo IPR availableGENE3D2.40.50.100coord: 32..86
e-value: 5.8E-15
score: 56.6
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 22..277
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 85..176
e-value: 2.97554E-35
score: 121.117
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 179..218
e-value: 2.5E-8
score: 34.3
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 22..277
IPR003029S1 domainPROSITEPS50126S1coord: 91..169
score: 9.041821
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 179..285
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 84..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:37943..38881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9889.t1Ggra9889.t1Gracilaria gracilis GNS1m malemRNAtig00000009_pilon 37943..38881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9889.t1 ID=Ggra9889.t1|Name=Ggra9889.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MDIGKASSFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARG
TLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVE
IGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDL
VSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELP
CGVHTILGNNGYVFLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGP
DTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAAEVEAMRLVVD
GIRVRRHCPIGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR004088KH_dom_type_1
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR003029S1_domain
IPR036612KH_dom_type_1_sf
IPR012340NA-bd_OB-fold