Ggra9889.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9889.t1
Unique NameGgra9889.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:37943..38881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705548.1
Preferred nameEXOSC2
PFAMsECR1_N,KH_6
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K03679,ko:K10572
KEGG ReactionR05202
KEGG Pathwayko00562,ko01100,ko03018,ko04070,map00562,map01100,map03018,map04070
KEGG ModuleM00132,M00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0001558,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008298,GO:0008312,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0030307,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0040008,GO:0042254,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045927,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051179,GO:0051252,GO:0051607,GO:0051641,GO:0051704,GO:0051707,GO:0060147,GO:0060149,GO:0060255,GO:0060968,GO:0060969,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071049,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098542,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Evalue5.94e-76
EggNOG OGsCOG1097@1|root,KOG3013@2759|Eukaryota
EC2.7.1.158
Descriptionnuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9889Ggra9889Gracilaria gracilis GNS1m malegenetig00000009_pilon 37943..38881 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9889.t1.start1Ggra9889.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 37943..37945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9889.t1.CDS1Ggra9889.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 37943..38881 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9889.t1.exon1Ggra9889.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 37943..38881 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9889.t1.stop1Ggra9889.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 38879..38881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9889.t1Ggra9889.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 37943..38881 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9889.t1 ID=Ggra9889.t1|Name=Ggra9889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MDIGKASSFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARG
TLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVE
IGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDL
VSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELP
CGVHTILGNNGYVFLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGP
DTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAAEVEAMRLVVD
GIRVRRHCPIGS*
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spliced messenger RNA

>Ggra9889.t1 ID=Ggra9889.t1|Name=Ggra9889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000009_pilon:37943..38881+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCGGTAAGGCAAGTTCGTTCACAATCTTCCGCCCGAAACGCGT
CTCCGACAACACAGACGCGGTGAACCGACTGGCACACGTGCCCATCACGG
CGCCAGGCTCCAGCATTCCCACCGAGGATCACTCCGTGCGAGCGCGGGGA
ACGCTGCTCAGCAGCACCGAGTCCGGGAATGTGCTCACCGCCACGAGGGC
GGGTGTGATTTCACGCGTCAACAAACTGGTCATGGTGATGCCACTTCGCG
CGCGTTACATCCCGGAAACTGGCGATGTTGTGGTTGGTCGCGTGGTCGAA
ATAGGTAACAAACGATACAAGATAGATGTCAATGCTACGAAACATGCGTT
TTTGTTGCTCACTGCGATCAATCTTCCTGGCGGCGTTCAAAGGCGGCGCA
ATCAGGAGGACGAACTCAACATGCGCAAGTACTTCAAGGAAGGTGATCTG
GTCAGTGCCGAAGTTCAGGAACATCGAAAGGATGGTACCGTCGCACTACA
CACGAGAAGTCTTCGCTATGGAAAGTTGGCAGGCGGTCAACTGGTCATGG
TGCAATCCGAGCTCGTGAAGAGGGCAAAGAAACATTTTCATGAACTACCA
TGTGGAGTGCATACTATTCTGGGAAACAATGGGTACGTTTTCTTATCGTC
AATGCAGAAGGGCCCTCTTTCCGTGGAGATGAGACGTCGCATAGCAAGGG
TCTCCAACAGCATACTGGCTTTGGACAGCGAGTTCATAGCAATCGGTCCG
GACACGATTATGGACGTGTATCGGACAAGTTTAACTAACGCTGTGGAAGT
AAAAGACATGTGCAAGCCGGACGTGATGAGGAGTATTTGTATGGGCGCTC
GTTCCATGAGGGATGCTGCTGAAGTGGAAGCGATGCGATTGGTTGTTGAT
GGAATCCGCGTGAGGAGACACTGCCCAATAGGCTCGTAA
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protein sequence of Ggra9889.t1

>Ggra9889.t1 ID=Ggra9889.t1|Name=Ggra9889.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MDIGKASSFTIFRPKRVSDNTDAVNRLAHVPITAPGSSIPTEDHSVRARG
TLLSSTESGNVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVE
IGNKRYKIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDL
VSAEVQEHRKDGTVALHTRSLRYGKLAGGQLVMVQSELVKRAKKHFHELP
CGVHTILGNNGYVFLSSMQKGPLSVEMRRRIARVSNSILALDSEFIAIGP
DTIMDVYRTSLTNAVEVKDMCKPDVMRSICMGARSMRDAAEVEAMRLVVD
GIRVRRHCPIGS*
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mRNA from alignment at tig00000009_pilon:37943..38881+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9889.t1 ID=Ggra9889.t1|Name=Ggra9889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000009_pilon:37943..38881+ (Gracilaria gracilis GNS1m male)
ATGGACATCGGTAAGGCAAGTTCGTTCACAATCTTCCGCCCGAAACGCGT
CTCCGACAACACAGACGCGGTGAACCGACTGGCACACGTGCCCATCACGG
CGCCAGGCTCCAGCATTCCCACCGAGGATCACTCCGTGCGAGCGCGGGGA
ACGCTGCTCAGCAGCACCGAGTCCGGGAATGTGCTCACCGCCACGAGGGC
GGGTGTGATTTCACGCGTCAACAAACTGGTCATGGTGATGCCACTTCGCG
CGCGTTACATCCCGGAAACTGGCGATGTTGTGGTTGGTCGCGTGGTCGAA
ATAGGTAACAAACGATACAAGATAGATGTCAATGCTACGAAACATGCGTT
TTTGTTGCTCACTGCGATCAATCTTCCTGGCGGCGTTCAAAGGCGGCGCA
ATCAGGAGGACGAACTCAACATGCGCAAGTACTTCAAGGAAGGTGATCTG
GTCAGTGCCGAAGTTCAGGAACATCGAAAGGATGGTACCGTCGCACTACA
CACGAGAAGTCTTCGCTATGGAAAGTTGGCAGGCGGTCAACTGGTCATGG
TGCAATCCGAGCTCGTGAAGAGGGCAAAGAAACATTTTCATGAACTACCA
TGTGGAGTGCATACTATTCTGGGAAACAATGGGTACGTTTTCTTATCGTC
AATGCAGAAGGGCCCTCTTTCCGTGGAGATGAGACGTCGCATAGCAAGGG
TCTCCAACAGCATACTGGCTTTGGACAGCGAGTTCATAGCAATCGGTCCG
GACACGATTATGGACGTGTATCGGACAAGTTTAACTAACGCTGTGGAAGT
AAAAGACATGTGCAAGCCGGACGTGATGAGGAGTATTTGTATGGGCGCTC
GTTCCATGAGGGATGCTGCTGAAGTGGAAGCGATGCGATTGGTTGTTGAT
GGAATCCGCGTGAGGAGACACTGCCCAATAGGCTCGTAA
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Coding sequence (CDS) from alignment at tig00000009_pilon:37943..38881+

>Ggra9889.t1 ID=Ggra9889.t1|Name=Ggra9889.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000009_pilon:37943..38881+ (Gracilaria gracilis GNS1m male)
ATGGACATCGGTAAGGCAAGTTCGTTCACAATCTTCCGCCCGAAACGCGT
CTCCGACAACACAGACGCGGTGAACCGACTGGCACACGTGCCCATCACGG
CGCCAGGCTCCAGCATTCCCACCGAGGATCACTCCGTGCGAGCGCGGGGA
ACGCTGCTCAGCAGCACCGAGTCCGGGAATGTGCTCACCGCCACGAGGGC
GGGTGTGATTTCACGCGTCAACAAACTGGTCATGGTGATGCCACTTCGCG
CGCGTTACATCCCGGAAACTGGCGATGTTGTGGTTGGTCGCGTGGTCGAA
ATAGGTAACAAACGATACAAGATAGATGTCAATGCTACGAAACATGCGTT
TTTGTTGCTCACTGCGATCAATCTTCCTGGCGGCGTTCAAAGGCGGCGCA
ATCAGGAGGACGAACTCAACATGCGCAAGTACTTCAAGGAAGGTGATCTG
GTCAGTGCCGAAGTTCAGGAACATCGAAAGGATGGTACCGTCGCACTACA
CACGAGAAGTCTTCGCTATGGAAAGTTGGCAGGCGGTCAACTGGTCATGG
TGCAATCCGAGCTCGTGAAGAGGGCAAAGAAACATTTTCATGAACTACCA
TGTGGAGTGCATACTATTCTGGGAAACAATGGGTACGTTTTCTTATCGTC
AATGCAGAAGGGCCCTCTTTCCGTGGAGATGAGACGTCGCATAGCAAGGG
TCTCCAACAGCATACTGGCTTTGGACAGCGAGTTCATAGCAATCGGTCCG
GACACGATTATGGACGTGTATCGGACAAGTTTAACTAACGCTGTGGAAGT
AAAAGACATGTGCAAGCCGGACGTGATGAGGAGTATTTGTATGGGCGCTC
GTTCCATGAGGGATGCTGCTGAAGTGGAAGCGATGCGATTGGTTGTTGAT
GGAATCCGCGTGAGGAGACACTGCCCAATAGGCTCGTAA
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