Ggra9885.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9885.t1
Unique NameGgra9885.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length547
Homology
BLAST of Ggra9885.t1 vs. uniprot
Match: A0A2V3J5V7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5V7_9FLOR)

HSP 1 Score: 659 bits (1701), Expect = 8.950e-231
Identity = 331/620 (53.39%), Postives = 431/620 (69.52%), Query Frame = 0
Query:    1 MKIAVVGGNLLGCATTLDLALVEEHDQHSLA-SDERFSVTVLERNTVLGGNSLRSVRVDDELEVEVGSYATLPVVEGTYLYDLIDTANDGRGTVGVLSRRVPIPGANVARRGQARAAVVNKPWASGSYRSLVRKYALWDWKNDEFPLVHRGWPFLDLLYRFLNNNVWRTIAFSMFLYSAEQLRSRVSGNINRAIMMAQCMTFLVLTILSPKRVVHMWQQNYSFWGTTAPLLLKYGVTPAIARGSVVGFVKLVSKMNMRNVATCSISVGSLVQRAELDSYLRSTALDYTNQFQYK------------------------------------------------------------------------------LTAIIFCYESKKYNITYSDETSESFDGVILCASPKEGEMMIDTPVGNSLPDLLGYDRDEEAAHESAHEQASYDAAESRNEELNNNPDLQ--IVPPGACSHVAVVVGKARSSFFRFADEKNIPDCIDVMYSPGFSRFERVREISNEKRGVYKVICGEDFKRSSLLEEMFEEDARIEYFEPIAKNPYSTSALPRQKHVDDCMPYIVLGRHFVYAKALRRIAKHPEMDAIAAVNSASLFSNAVHWGSEDGK 539
            M+IAV+GGNLLGCATTLDLALV+E D  + + S   F VT+LE    LGGNSLRS+ ++DE  VEVG+Y TLP++ GTYL DL+ T ND R T+ + ++R+ +PG+ +ARRG A AA +++PW++G+  SLVR YA+WDW+ND++PL H GWP LDLL+RFLNNN+WR+I  +  +YS EQLR+ V G INRA M+AQC+ FLVLT+LSP+R+V MWQ NYSFWGTTAPLL+KYG+TPAI RGS  GFVK +SKMN RNVATCSISVG+LV+RAELDSYLRSTA+D+ NQF+Y                                                                               +TAII+   + +Y+IT++D  SESF+GV+LC SP EG M IDTPVG+SL D+LGY+RD++AA +SA E+A++    + ++   +N  +Q   VPPGAC+H+AV+ GK RSSFFRFADE+ IPD IDV+++P F RFERVREIS ++ GVY V+   DF+ S L E+MFE +A++ +FE +  NPYST++LPR  H+D+CMPY+VLG HF+ AKA R IAKHPEMDAIAAVN+ASLFS  + WG+E+ K
Sbjct:    1 MRIAVIGGNLLGCATTLDLALVQELDNETPSDSTTVFEVTILETQPRLGGNSLRSIALEDESRVEVGAYRTLPILPGTYLNDLVQTVNDERATISIFNKRISLPGSTIARRGHAGAATIHRPWSTGTNGSLVRSYAIWDWQNDQYPLRHSGWPLLDLLHRFLNNNIWRSITLAALIYSIEQLRTVVHGRINRATMLAQCIAFLVLTVLSPQRLVAMWQHNYSFWGTTAPLLIKYGITPAIVRGSTTGFVKHLSKMNTRNVATCSISVGTLVRRAELDSYLRSTAMDFVNQFKYDHEYVHRHIEPVLVQQSLGADINHVNALALQFSLLDSDPVNNDARDRLCTISPDNATLCAALVDAAKATMPVHVKLNTTVTAIIYNERTNEYDITFADGASESFEGVVLCTSPVEGGMTIDTPVGSSLSDMLGYERDKQAAQQSAEEEAAH---RTTSQAGGDNITIQQPAVPPGACTHIAVIAGKPRSSFFRFADERRIPDTIDVLHAPKFCRFERVREISKDEGGVYAVLVAADFESSGLKEQMFEHNAKVLHFESVPSNPYSTTSLPRHAHIDNCMPYVVLGTHFINAKAFRSIAKHPEMDAIAAVNTASLFSRGIQWGTEEDK 617          
BLAST of Ggra9885.t1 vs. uniprot
Match: A0A7S2ZDA5 (Hypothetical protein n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDA5_9RHOD)

HSP 1 Score: 128 bits (322), Expect = 6.030e-28
Identity = 157/614 (25.57%), Postives = 254/614 (41.37%), Query Frame = 0
Query:    1 MKIAVVGGNLLGCATTLDL--------------ALVEEHDQHSLASD-ERFSVTVLERNTVLGGNSLRSVRVDDELEVEVGSYATLPVVEGTYLYDLIDTANDGRGTVGVLSRRVPIPGANVARRGQARAAVVNKPWASGSYRSLVRKYALWDWKNDEFPLVHRGWPFLDLLYRFLNNNVWRTIAFSMFL------YSAEQLRSRVSGNINRAIMMAQCMTFLVLTILSPKRVVHMWQQNYSFWGTTAPLLLKYGVTPAIARGSVVGFVKLVSKMNMRNVATCSISVGSLVQRAELDSYLRSTALDYTNQFQYKLTAIIFCYESKKYNITYSDETSESFD----GVILC---ASPKEGEMMIDTPVGNS-LPDLLGYD------------RDEEAAHESAHEQA---SYDA---AESRNEELN--------NNPDLQIVPPGACSH----------------------VAVVVGKARSSFFRFADEKNIPDCIDVMYSPGFSRFERVREISNEKRGVYKVICGEDFKRSS-LLEEMFEEDARIEYFEPIAKNPYSTSALPRQKHVDDCMPYIVLGRHFVYAKALRRIAKHPEMDAIAAVNSASLFSNAVHWGSE 536
            M++A+VGGNL GCAT   L              A  +E D   L    E F VT+ E+++VLGGN L++  ++D + VE G  +TL   +G Y+ +++D  +                              +++ W  G+    VR +A++D  N E+   H G+  LD+L       V  +  F+ FL      ++    R  +SG      + A    F+ L +L P+R +    ++ +FW +    L+ YG T A++RG+  GF      M   N  T SI++G L  R  L SY  + A      F++ L A +  Y   +  + Y++    + D      +LC   A   EG+ ++    GN+ L + LG              +   A    + +QA   SY     AE   EE N        N  +L    PG  +                       +A+V G              +PD I       + + E V E  ++K  ++ VIC E+ K    L+ E+F     ++  E  ++  Y T         +D +P ++LG  F+ A  + R++  PE D I+A N+ASLFS  V+W  E
Sbjct:    1 MRVAIVGGNLTGCATAWFLEKSYADLRKEYELRARCQEDDSDVLPPPPENFKVTIFEKSSVLGGNKLQTEIIED-VAVEAGRNSTLHS-DGVYVGEVLDQMSS--------------------------ELELDRFWLEGTGYHSVRSFAIYDADNSEYLFRHGGYWGLDIL------KVVASSIFTRFLLLVGCGFALYHGRFEMSGLARLKTIAAAVFVFISL-VLFPRRFLASVNRSLAFWSSAIVGLMTYGTTAALSRGASKGFTDHFKAMLKANATTKSITLGHLFNRCGLGSYSSTDAESAFRSFKF-LPAFVRHYSDTQLQVDYANSQLAAKDVSTLAAMLCQQRADVSEGDKVLRIRGGNAKLCEALGRGSRQMLNAAAVKIKKRSAEEIESGKQAYILSYKIPAQAEPVEEEFNGIVLACSPNMEELTFETPGMDNSGDVFGYTKEILTTQTPRNRSRWLALVAGTLNHRCLGHLIADTVPDMILSTSGKDWLKIECVAE--SKKGKIWSVICTEEPKAGEGLIAELFTNVREMKVRER-SQPKYKTREFINGVDGND-VPSLILGTRFINAAGMDRLSCDPETDIISAWNAASLFSVGVNWMEE 574          
BLAST of Ggra9885.t1 vs. uniprot
Match: A0A7S3E6H6 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6H6_9RHOD)

HSP 1 Score: 100 bits (249), Expect = 1.450e-19
Identity = 96/362 (26.52%), Postives = 159/362 (43.92%), Query Frame = 0
Query:    1 MKIAVVGGNLLGCATTLDL--------------ALVEEHDQHSLASD-ERFSVTVLERNTVLGGNSLRSVRVDDELEVEVGSYATLPVVEGTYLYDLIDTANDGRGTVGVLSRRVPIPGANVARRGQARAAVVNKPWASGSYRSLVRKYALWDWKNDEFPLVHRGWPFLDLLYRFLNNNVWRTIAFSMFL------YSAEQLRSRVSGNINRAIMMAQCMTFLVLTILSPKRVVHMWQQNYSFWGTTAPLLLKYGVTPAIARGSVVGFVKLVSKMNMRNVATCSISVGSLVQRAELDSYLRSTALDYTNQFQYKLTAIIFCYESKKYNITYSDETSESFD----GVILC---ASPKEGEMMI 334
            M++A+VGGNL GCAT   L              A  +E D   L    E F VT+ E+++VLGGN L++  ++D + VE G  +TL   +G Y+ +++D  +                              +++ W  G+    VR +A++D  N E+   H G+  LD+L       V  +  F+ FL      ++    R  +SG      + A    F+ L +L P+R +    ++ +FW +    L+ YG T A++RG+  GF      M   N  T SI++G L  R  L SY  + A      F++ L A +  Y   +  + Y++    + D      +LC   A   EG+ ++
Sbjct:    1 MRVAIVGGNLTGCATAWFLEKSYADLRKEYELRARCQEDDSDVLPPPPENFKVTIFEKSSVLGGNKLQTEIIED-VAVEAGRNSTLHS-DGVYVGEVLDQMSS--------------------------ELELDRFWLEGTGYHSVRSFAIYDADNSEYLFRHGGYWGLDIL------KVVASSIFTRFLLLVGCGFALYHGRFEMSGLARLKTIAAAVFVFISL-VLFPRRFLASVNRSLAFWSSAIVGLMTYGTTAALSRGASKGFTDHFKAMLKANATTKSITLGHLFNRCGLGSYSSTDAESAFRSFKF-LPAFVRHYSDTQLQVDYANSQLAAKDVSTLAAMLCQQRADVSEGDKVL 326          
The following BLAST results are available for this feature:
BLAST of Ggra9885.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J5V78.950e-23153.39Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S2ZDA56.030e-2825.57Hypothetical protein n=5 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E6H61.450e-1926.52Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 358..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..368
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..380
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 229..248
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 192..209
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..191
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 210..228
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 249..546
IPR036188FAD/NAD(P)-binding domain superfamilySUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 1..326

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:307039..308913 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9885.t1Ggra9885.t1Gracilaria gracilis GNS1m malemRNAtig00000170_pilon 307039..308913 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9885.t1 ID=Ggra9885.t1|Name=Ggra9885.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MKIAVVGGNLLGCATTLDLALVEEHDQHSLASDERFSVTVLERNTVLGGN
SLRSVRVDDELEVEVGSYATLPVVEGTYLYDLIDTANDGRGTVGVLSRRV
PIPGANVARRGQARAAVVNKPWASGSYRSLVRKYALWDWKNDEFPLVHRG
WPFLDLLYRFLNNNVWRTIAFSMFLYSAEQLRSRVSGNINRAIMMAQCMT
FLVLTILSPKRVVHMWQQNYSFWGTTAPLLLKYGVTPAIARGSVVGFVKL
VSKMNMRNVATCSISVGSLVQRAELDSYLRSTALDYTNQFQYKLTAIIFC
YESKKYNITYSDETSESFDGVILCASPKEGEMMIDTPVGNSLPDLLGYDR
DEEAAHESAHEQASYDAAESRNEELNNNPDLQIVPPGACSHVAVVVGKAR
SSFFRFADEKNIPDCIDVMYSPGFSRFERVREISNEKRGVYKVICGEDFK
RSSLLEEMFEEDARIEYFEPIAKNPYSTSALPRQKHVDDCMPYIVLGRHF
VYAKALRRIAKHPEMDAIAAVNSASLFSNAVHWGSEDGKVDGDQQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf