Ggra9885.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9885.t1
Unique Name	Ggra9885.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:307039..308913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9885	Ggra9885	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 307039..308913 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9885.t1	Ggra9885.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 307039..308913 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9885.t1.start1	Ggra9885.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 307039..307041 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9885.t1.CDS1	Ggra9885.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 307039..307918 +
Ggra9885.t1.CDS2	Ggra9885.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 308153..308913 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9885.t1.exon1	Ggra9885.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 307039..307918 +
Ggra9885.t1.exon2	Ggra9885.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 308153..308913 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9885.t1.intron1	Ggra9885.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000170_pilon 307919..308152 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9885.t1.stop1	Ggra9885.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 308911..308913 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:307039..308913+
coding sequence from alignment at tig00000170_pilon:307039..308913+

mRNA sequence

>Ggra9885.t1 ID=Ggra9885.t1|Name=Ggra9885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp
MKIAVVGGNLLGCATTLDLALVEEHDQHSLASDERFSVTVLERNTVLGGN
SLRSVRVDDELEVEVGSYATLPVVEGTYLYDLIDTANDGRGTVGVLSRRV
PIPGANVARRGQARAAVVNKPWASGSYRSLVRKYALWDWKNDEFPLVHRG
WPFLDLLYRFLNNNVWRTIAFSMFLYSAEQLRSRVSGNINRAIMMAQCMT
FLVLTILSPKRVVHMWQQNYSFWGTTAPLLLKYGVTPAIARGSVVGFVKL
VSKMNMRNVATCSISVGSLVQRAELDSYLRSTALDYTNQFQYKLTAIIFC
YESKKYNITYSDETSESFDGVILCASPKEGEMMIDTPVGNSLPDLLGYDR
DEEAAHESAHEQASYDAAESRNEELNNNPDLQIVPPGACSHVAVVVGKAR
SSFFRFADEKNIPDCIDVMYSPGFSRFERVREISNEKRGVYKVICGEDFK
RSSLLEEMFEEDARIEYFEPIAKNPYSTSALPRQKHVDDCMPYIVLGRHF
VYAKALRRIAKHPEMDAIAAVNSASLFSNAVHWGSEDGKVDGDQQG*

spliced messenger RNA

>Ggra9885.t1 ID=Ggra9885.t1|Name=Ggra9885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000170_pilon:307039..308913+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATTGCTGTGGTAGGCGGAAACTTGCTGGGATGTGCGACAACTTT
GGATCTCGCGCTTGTCGAAGAGCATGACCAACACAGTTTGGCTTCAGATG
AACGCTTTAGCGTAACTGTTCTGGAACGTAATACAGTGCTCGGAGGAAAC
TCGCTGCGTTCTGTTCGCGTTGATGATGAGCTGGAAGTCGAGGTTGGCTC
GTATGCCACCCTGCCGGTCGTCGAAGGTACGTATCTGTACGACCTTATTG
ACACTGCGAATGATGGACGTGGTACGGTTGGAGTCCTCAGTCGGCGAGTG
CCGATCCCGGGCGCTAATGTAGCGAGACGTGGGCAGGCGCGAGCGGCGGT
TGTGAACAAACCGTGGGCGAGTGGATCTTACAGATCGCTGGTTCGAAAAT
ATGCGCTTTGGGATTGGAAGAATGATGAGTTTCCGCTTGTGCATAGGGGA
TGGCCTTTCTTGGATTTGCTTTATCGCTTTTTGAACAACAATGTGTGGCG
AACTATAGCCTTTTCAATGTTTCTATACTCGGCGGAACAACTGAGAAGTC
GCGTTAGCGGGAACATTAATCGAGCTATCATGATGGCTCAATGCATGACT
TTCTTGGTTTTGACCATACTATCTCCGAAACGAGTGGTTCATATGTGGCA
GCAAAACTATTCGTTCTGGGGGACGACTGCGCCGCTCTTGTTAAAGTATG
GTGTTACACCGGCCATTGCTCGTGGAAGTGTGGTTGGTTTTGTCAAATTG
GTTTCCAAGATGAATATGAGAAACGTTGCAACTTGTTCTATCTCCGTCGG
CTCGCTTGTGCAACGAGCTGAACTTGATTCCTATCTGCGAAGCACTGCTC
TGGATTATACCAATCAGTTCCagtacaagcTCACCGCTATCATCTTCTGC
TATGAGTCGAAGAAGTACAACATCACTTATTCTGATGAAACCAGCGAGTC
ATTTGATGGAGTTATTCTGTGCGCATCTCCAAAGGAAGGAGAAATGATGA
TCGACACCCCCGTAGGTAACTCTTTGCCTGACCTGCTAGGATACGATCGT
GACGAAGAGGCAGCACATGAATCCGCACATGAGCAAGCAAGTTACGACGC
TGCCGAATCTAGAAATGAAGAACTCAACAACAATCCTGACCTGCAAATTG
TTCCTCCAGGTGCATGTTCGCACGTCGCTGTTGTCGTGGGAAAAGCGCGC
TCTTCCTTTTTCCGTTTTGCAGACGAGAAGAATATTCCAGATTGCATCGA
CGTCATGTACTCACCGGGATTCTCCCGTTTCGAACGAGTAAGAGAAATAT
CCAACGAGAAACGCGGTGTTTACAAAGTCATCTGCGGTGAGGACTTCAAA
AGGTCAAGTTTGCTGGAAGAAATGTTCGAAGAAGATGCACGCATTGAGTA
TTTTGAACCGATTGCAAAGAATCCCTATTCAACGTCCGCCCTTCCTCGTC
AAAAACATGTAGATGATTGTATGCCGTACATTGTGCTTGGAAGACATTTC
GTGTACGCCAAGGCTTTGCGTCGTATTGCAAAGCACCCGGAAATGGATGC
AATCGCGGCTGTGAATTCTGCGAGCTTGTTTTCTAACGCCGTGCATTGGG
GAAGCGAAGATGGTAAGGTTGATGGAGATCAACAGGGGTAA

protein sequence of Ggra9885.t1

>Ggra9885.t1 ID=Ggra9885.t1|Name=Ggra9885.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MKIAVVGGNLLGCATTLDLALVEEHDQHSLASDERFSVTVLERNTVLGGN
SLRSVRVDDELEVEVGSYATLPVVEGTYLYDLIDTANDGRGTVGVLSRRV
PIPGANVARRGQARAAVVNKPWASGSYRSLVRKYALWDWKNDEFPLVHRG
WPFLDLLYRFLNNNVWRTIAFSMFLYSAEQLRSRVSGNINRAIMMAQCMT
FLVLTILSPKRVVHMWQQNYSFWGTTAPLLLKYGVTPAIARGSVVGFVKL
VSKMNMRNVATCSISVGSLVQRAELDSYLRSTALDYTNQFQYKLTAIIFC
YESKKYNITYSDETSESFDGVILCASPKEGEMMIDTPVGNSLPDLLGYDR
DEEAAHESAHEQASYDAAESRNEELNNNPDLQIVPPGACSHVAVVVGKAR
SSFFRFADEKNIPDCIDVMYSPGFSRFERVREISNEKRGVYKVICGEDFK
RSSLLEEMFEEDARIEYFEPIAKNPYSTSALPRQKHVDDCMPYIVLGRHF
VYAKALRRIAKHPEMDAIAAVNSASLFSNAVHWGSEDGKVDGDQQG*

mRNA from alignment at tig00000170_pilon:307039..308913+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9885.t1 ID=Ggra9885.t1|Name=Ggra9885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1875bp|location=Sequence derived from alignment at tig00000170_pilon:307039..308913+ (Gracilaria gracilis GNS1m male)
ATGAAGATTGCTGTGGTAGGCGGAAACTTGCTGGGATGTGCGACAACTTT
GGATCTCGCGCTTGTCGAAGAGCATGACCAACACAGTTTGGCTTCAGATG
AACGCTTTAGCGTAACTGTTCTGGAACGTAATACAGTGCTCGGAGGAAAC
TCGCTGCGTTCTGTTCGCGTTGATGATGAGCTGGAAGTCGAGGTTGGCTC
GTATGCCACCCTGCCGGTCGTCGAAGGTACGTATCTGTACGACCTTATTG
ACACTGCGAATGATGGACGTGGTACGGTTGGAGTCCTCAGTCGGCGAGTG
CCGATCCCGGGCGCTAATGTAGCGAGACGTGGGCAGGCGCGAGCGGCGGT
TGTGAACAAACCGTGGGCGAGTGGATCTTACAGATCGCTGGTTCGAAAAT
ATGCGCTTTGGGATTGGAAGAATGATGAGTTTCCGCTTGTGCATAGGGGA
TGGCCTTTCTTGGATTTGCTTTATCGCTTTTTGAACAACAATGTGTGGCG
AACTATAGCCTTTTCAATGTTTCTATACTCGGCGGAACAACTGAGAAGTC
GCGTTAGCGGGAACATTAATCGAGCTATCATGATGGCTCAATGCATGACT
TTCTTGGTTTTGACCATACTATCTCCGAAACGAGTGGTTCATATGTGGCA
GCAAAACTATTCGTTCTGGGGGACGACTGCGCCGCTCTTGTTAAAGTATG
GTGTTACACCGGCCATTGCTCGTGGAAGTGTGGTTGGTTTTGTCAAATTG
GTTTCCAAGATGAATATGAGAAACGTTGCAACTTGTTCTATCTCCGTCGG
CTCGCTTGTGCAACGAGCTGAACTTGATTCCTATCTGCGAAGCACTGCTC
TGGATTATACCAATCAGTTCCagtacaagcgtgaatatgtcgatcgccat
atcgcaccgaccgtgattcagcagcacacaggggcaaacatgaagcaggt
caatgctctggcgttgcagttcgccatgctggattgtgaccccatgaaca
gtgatggaaaagatcgcctctgtactataactccgaatagcgcctcattg
tgtcaggccttgattgaggctgcaaaggcaactatgtctgtcgaagtgaa
gctgaataccgaAGTCACCGCTATCATCTTCTGCTATGAGTCGAAGAAGT
ACAACATCACTTATTCTGATGAAACCAGCGAGTCATTTGATGGAGTTATT
CTGTGCGCATCTCCAAAGGAAGGAGAAATGATGATCGACACCCCCGTAGG
TAACTCTTTGCCTGACCTGCTAGGATACGATCGTGACGAAGAGGCAGCAC
ATGAATCCGCACATGAGCAAGCAAGTTACGACGCTGCCGAATCTAGAAAT
GAAGAACTCAACAACAATCCTGACCTGCAAATTGTTCCTCCAGGTGCATG
TTCGCACGTCGCTGTTGTCGTGGGAAAAGCGCGCTCTTCCTTTTTCCGTT
TTGCAGACGAGAAGAATATTCCAGATTGCATCGACGTCATGTACTCACCG
GGATTCTCCCGTTTCGAACGAGTAAGAGAAATATCCAACGAGAAACGCGG
TGTTTACAAAGTCATCTGCGGTGAGGACTTCAAAAGGTCAAGTTTGCTGG
AAGAAATGTTCGAAGAAGATGCACGCATTGAGTATTTTGAACCGATTGCA
AAGAATCCCTATTCAACGTCCGCCCTTCCTCGTCAAAAACATGTAGATGA
TTGTATGCCGTACATTGTGCTTGGAAGACATTTCGTGTACGCCAAGGCTT
TGCGTCGTATTGCAAAGCACCCGGAAATGGATGCAATCGCGGCTGTGAAT
TCTGCGAGCTTGTTTTCTAACGCCGTGCATTGGGGAAGCGAAGATGGTAA
GGTTGATGGAGATCAACAGGGGTAA

Coding sequence (CDS) from alignment at tig00000170_pilon:307039..308913+

>Ggra9885.t1 ID=Ggra9885.t1|Name=Ggra9885.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000170_pilon:307039..308913+ (Gracilaria gracilis GNS1m male)
ATGAAGATTGCTGTGGTAGGCGGAAACTTGCTGGGATGTGCGACAACTTT
GGATCTCGCGCTTGTCGAAGAGCATGACCAACACAGTTTGGCTTCAGATG
AACGCTTTAGCGTAACTGTTCTGGAACGTAATACAGTGCTCGGAGGAAAC
TCGCTGCGTTCTGTTCGCGTTGATGATGAGCTGGAAGTCGAGGTTGGCTC
GTATGCCACCCTGCCGGTCGTCGAAGGTACGTATCTGTACGACCTTATTG
ACACTGCGAATGATGGACGTGGTACGGTTGGAGTCCTCAGTCGGCGAGTG
CCGATCCCGGGCGCTAATGTAGCGAGACGTGGGCAGGCGCGAGCGGCGGT
TGTGAACAAACCGTGGGCGAGTGGATCTTACAGATCGCTGGTTCGAAAAT
ATGCGCTTTGGGATTGGAAGAATGATGAGTTTCCGCTTGTGCATAGGGGA
TGGCCTTTCTTGGATTTGCTTTATCGCTTTTTGAACAACAATGTGTGGCG
AACTATAGCCTTTTCAATGTTTCTATACTCGGCGGAACAACTGAGAAGTC
GCGTTAGCGGGAACATTAATCGAGCTATCATGATGGCTCAATGCATGACT
TTCTTGGTTTTGACCATACTATCTCCGAAACGAGTGGTTCATATGTGGCA
GCAAAACTATTCGTTCTGGGGGACGACTGCGCCGCTCTTGTTAAAGTATG
GTGTTACACCGGCCATTGCTCGTGGAAGTGTGGTTGGTTTTGTCAAATTG
GTTTCCAAGATGAATATGAGAAACGTTGCAACTTGTTCTATCTCCGTCGG
CTCGCTTGTGCAACGAGCTGAACTTGATTCCTATCTGCGAAGCACTGCTC
TGGATTATACCAATCAGTTCCagtacaagcTCACCGCTATCATCTTCTGC
TATGAGTCGAAGAAGTACAACATCACTTATTCTGATGAAACCAGCGAGTC
ATTTGATGGAGTTATTCTGTGCGCATCTCCAAAGGAAGGAGAAATGATGA
TCGACACCCCCGTAGGTAACTCTTTGCCTGACCTGCTAGGATACGATCGT
GACGAAGAGGCAGCACATGAATCCGCACATGAGCAAGCAAGTTACGACGC
TGCCGAATCTAGAAATGAAGAACTCAACAACAATCCTGACCTGCAAATTG
TTCCTCCAGGTGCATGTTCGCACGTCGCTGTTGTCGTGGGAAAAGCGCGC
TCTTCCTTTTTCCGTTTTGCAGACGAGAAGAATATTCCAGATTGCATCGA
CGTCATGTACTCACCGGGATTCTCCCGTTTCGAACGAGTAAGAGAAATAT
CCAACGAGAAACGCGGTGTTTACAAAGTCATCTGCGGTGAGGACTTCAAA
AGGTCAAGTTTGCTGGAAGAAATGTTCGAAGAAGATGCACGCATTGAGTA
TTTTGAACCGATTGCAAAGAATCCCTATTCAACGTCCGCCCTTCCTCGTC
AAAAACATGTAGATGATTGTATGCCGTACATTGTGCTTGGAAGACATTTC
GTGTACGCCAAGGCTTTGCGTCGTATTGCAAAGCACCCGGAAATGGATGC
AATCGCGGCTGTGAATTCTGCGAGCTTGTTTTCTAACGCCGTGCATTGGG
GAAGCGAAGATGGTAAGGTTGATGGAGATCAACAGGGGTAA