Ggra9884.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9884.t1
Unique Name	Ggra9884.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	311

Homology

[Close]

BLAST of Ggra9884.t1 vs. uniprot
Match: A0A2V3J5P1 (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5P1_9FLOR)

HSP 1 Score: 268 bits (685), Expect = 2.540e-85
Identity = 161/297 (54.21%), Postives = 184/297 (61.95%), Query Frame = 0

Query:   43 KRLRNSSHAAQTCYHVAGPGPPSPSPSLSPSSPPLLPPPSSSPVLPCVSLPDEVL----------------------WCRVIDASPLVWRDVSFRRAAFRRRVVSHDRQLKLSERCGSRAVALAADAGNLRARFLRTFLFEHQIMRAVTIAQPNASLLVSGNALLQSRPFAPWTDSRPP--DGVWIGVHAARWSETAMG---ATSVDMEQTSLRSVQPLGHDGT--RLPGGALVGIIHVSDAVYFAAGGAASSAPCWIWRIDRAVRLQRAVRCAGFVGLWPMSSFLSEFVVQTVMSQ 310
            KR R+    AQT YHVAGPGPP      SP+S                SLPDEVL                      WCRVIDA+P VWR VSFRRAAF R VV+H   L+L  R GS  V+LAA AGN  ARFL+ FLF++ ++RA+TIAQP ASLLVSG   LQSRPF PW     P  DGVW+ VHAARWS+       A S     + L   +  G   T  +LPGGALVG+IHVS AV+  AG AASSAPCWIWRIDRAVRL RAVRCAGFVGLWPMS+FL++FVV  +  Q
Sbjct:   45 KRARHRPPIAQTRYHVAGPGPPHXX-XXSPTS----------------SLPDEVLVTIFRFIDDASLLAQLRTVSTQWCRVIDANPSVWRSVSFRRAAFSRSVVAHGDALRLGARSGSATVSLAAAAGNHWARFLKHFLFDNHVLRAITIAQPCASLLVSGTQYLQSRPFPPWQGCHAPPLDGVWVAVHAARWSDAPPANPPALSPSHRASRLSHPRTPGGVATAPKLPGGALVGLIHVSGAVH-CAGAAASSAPCWIWRIDRAVRLNRAVRCAGFVGLWPMSTFLTDFVVSAIHRQ 323

The following BLAST results are available for this feature:

BLAST of Ggra9884.t1 vs. uniprot

BLAST of Ggra9884.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J5P1	2.540e-85	54.21	F-box domain-containing protein n=1 Tax=Gracilario...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..78
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..310
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:305376..306374 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9884.t1	Ggra9884.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000170_pilon 305376..306374 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9884.t1 ID=Ggra9884.t1|Name=Ggra9884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MPAASLLASTSASSPHMPRACKRDAPPAPPPPARPRVLQPRRKRLRNSSH
AAQTCYHVAGPGPPSPSPSLSPSSPPLLPPPSSSPVLPCVSLPDEVLWCR
VIDASPLVWRDVSFRRAAFRRRVVSHDRQLKLSERCGSRAVALAADAGNL
RARFLRTFLFEHQIMRAVTIAQPNASLLVSGNALLQSRPFAPWTDSRPPD
GVWIGVHAARWSETAMGATSVDMEQTSLRSVQPLGHDGTRLPGGALVGII
HVSDAVYFAAGGAASSAPCWIWRIDRAVRLQRAVRCAGFVGLWPMSSFLS
EFVVQTVMSQ*