Ggra9884.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9884.t1
Unique NameGgra9884.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:305376..306374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9884Ggra9884Gracilaria gracilis GNS1m malegenetig00000170_pilon 305376..306374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9884.t1Ggra9884.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 305376..306374 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9884.t1.start1Ggra9884.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 305376..305378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9884.t1.CDS1Ggra9884.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 305376..305666 +
Ggra9884.t1.CDS2Ggra9884.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000170_pilon 305733..306374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9884.t1.exon1Ggra9884.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 305376..305666 +
Ggra9884.t1.exon2Ggra9884.t1.exon2Gracilaria gracilis GNS1m maleexontig00000170_pilon 305733..306374 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9884.t1.intron1Ggra9884.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000170_pilon 305667..305732 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9884.t1.stop1Ggra9884.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 306372..306374 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9884.t1 ID=Ggra9884.t1|Name=Ggra9884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp
MPAASLLASTSASSPHMPRACKRDAPPAPPPPARPRVLQPRRKRLRNSSH
AAQTCYHVAGPGPPSPSPSLSPSSPPLLPPPSSSPVLPCVSLPDEVLWCR
VIDASPLVWRDVSFRRAAFRRRVVSHDRQLKLSERCGSRAVALAADAGNL
RARFLRTFLFEHQIMRAVTIAQPNASLLVSGNALLQSRPFAPWTDSRPPD
GVWIGVHAARWSETAMGATSVDMEQTSLRSVQPLGHDGTRLPGGALVGII
HVSDAVYFAAGGAASSAPCWIWRIDRAVRLQRAVRCAGFVGLWPMSSFLS
EFVVQTVMSQ*
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spliced messenger RNA

>Ggra9884.t1 ID=Ggra9884.t1|Name=Ggra9884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000170_pilon:305376..306374+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCGCTTCGTTACTCGCGTCCACCTCCGCCTCTTCGCCGCACAT
GCCGCGCGCCTGCAAGCGCGACGCGCCTCCCGCGCCGCCGCCGCCAGCGC
GTCCGCGCGTCCTGCAGCCGCGTCGCAAGCGCCTGCGAAACAGCTCGCAC
GCCGCGCAGACCTGCTACCATGTCGCTGGGCCTGGCCCGccttcaccgtc
cccgtccctgtctccgtcatcgccgccgctgctgccgccgccgtcgtctt
cacccgtccTCCCGTGCGTTTCTCTGCCGGATGAGGTGCTCtggtgccgc
gTTATTGACGCGTCCCCGCTCGTGTGGCGCGATGTGTCCTTCCGTCGCGC
CGCCTTTCGCCGCCGCGTTGTCAGCCATGATCGCCAATTGAAGCTGTCCG
AGCGTTGTGGCAGTCGTGCCGTCGCATTGGCCGCGGACGCTGGCAATTTA
CGCGCTCGCTTCTTGAGAACATTCCTGTTCGAACATCAGATCATGAGGGC
TGTCACCATTGCCCAGCCAAACGCGTCGTTGCTCGTTTCTGGAAACGCTC
TCTTGCAGTCGAGACCGTTCGCTCCGTGGACCGATTCGCGACCGCCCGAC
GGTGTATGGATCGGCGTGCATGCCGCCAGGTGGAGCGAGACCGCCATGGG
AGCCACCAGTGTCGACATGGAGCAGACGTCGTTGAGAAGCGTGCAGCCAC
TTGGCCATGATGGCACGCGATTGCCCGGCGGCGCTCTCGTTGGCATCATT
CATGTCAGTGATGCCGTGTACTTCGCTGCTGGTGGCGCTGCTTCCAGCGC
ACCCTGCTGGATTTGGCGCATCGATCGCGCAGTCAGGTTGCAAAGGGCCG
TCAGATGCGCCGGCTTTGTGGGGCTTTGGCCTATGTCTTCTTTTCTCAGT
GAGTTTGTAGTGCAGACTGTGATGTCACAGTAG
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protein sequence of Ggra9884.t1

>Ggra9884.t1 ID=Ggra9884.t1|Name=Ggra9884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MPAASLLASTSASSPHMPRACKRDAPPAPPPPARPRVLQPRRKRLRNSSH
AAQTCYHVAGPGPPSPSPSLSPSSPPLLPPPSSSPVLPCVSLPDEVLWCR
VIDASPLVWRDVSFRRAAFRRRVVSHDRQLKLSERCGSRAVALAADAGNL
RARFLRTFLFEHQIMRAVTIAQPNASLLVSGNALLQSRPFAPWTDSRPPD
GVWIGVHAARWSETAMGATSVDMEQTSLRSVQPLGHDGTRLPGGALVGII
HVSDAVYFAAGGAASSAPCWIWRIDRAVRLQRAVRCAGFVGLWPMSSFLS
EFVVQTVMSQ*
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mRNA from alignment at tig00000170_pilon:305376..306374+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9884.t1 ID=Ggra9884.t1|Name=Ggra9884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000170_pilon:305376..306374+ (Gracilaria gracilis GNS1m male)
ATGCCTGCCGCTTCGTTACTCGCGTCCACCTCCGCCTCTTCGCCGCACAT
GCCGCGCGCCTGCAAGCGCGACGCGCCTCCCGCGCCGCCGCCGCCAGCGC
GTCCGCGCGTCCTGCAGCCGCGTCGCAAGCGCCTGCGAAACAGCTCGCAC
GCCGCGCAGACCTGCTACCATGTCGCTGGGCCTGGCCCGccttcaccgtc
cccgtccctgtctccgtcatcgccgccgctgctgccgccgccgtcgtctt
cacccgtccTCCCGTGCGTTTCTCTGCCGGATGAGGTGCTCGTGTGCAtc
ctgcgtttcgttgatgacgcgtgcttgctcgcgcgattgcgcactgtgtg
cacgcagtggtgccgcgTTATTGACGCGTCCCCGCTCGTGTGGCGCGATG
TGTCCTTCCGTCGCGCCGCCTTTCGCCGCCGCGTTGTCAGCCATGATCGC
CAATTGAAGCTGTCCGAGCGTTGTGGCAGTCGTGCCGTCGCATTGGCCGC
GGACGCTGGCAATTTACGCGCTCGCTTCTTGAGAACATTCCTGTTCGAAC
ATCAGATCATGAGGGCTGTCACCATTGCCCAGCCAAACGCGTCGTTGCTC
GTTTCTGGAAACGCTCTCTTGCAGTCGAGACCGTTCGCTCCGTGGACCGA
TTCGCGACCGCCCGACGGTGTATGGATCGGCGTGCATGCCGCCAGGTGGA
GCGAGACCGCCATGGGAGCCACCAGTGTCGACATGGAGCAGACGTCGTTG
AGAAGCGTGCAGCCACTTGGCCATGATGGCACGCGATTGCCCGGCGGCGC
TCTCGTTGGCATCATTCATGTCAGTGATGCCGTGTACTTCGCTGCTGGTG
GCGCTGCTTCCAGCGCACCCTGCTGGATTTGGCGCATCGATCGCGCAGTC
AGGTTGCAAAGGGCCGTCAGATGCGCCGGCTTTGTGGGGCTTTGGCCTAT
GTCTTCTTTTCTCAGTGAGTTTGTAGTGCAGACTGTGATGTCACAGTAG
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Coding sequence (CDS) from alignment at tig00000170_pilon:305376..306374+

>Ggra9884.t1 ID=Ggra9884.t1|Name=Ggra9884.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000170_pilon:305376..306374+ (Gracilaria gracilis GNS1m male)
ATGCCTGCCGCTTCGTTACTCGCGTCCACCTCCGCCTCTTCGCCGCACAT
GCCGCGCGCCTGCAAGCGCGACGCGCCTCCCGCGCCGCCGCCGCCAGCGC
GTCCGCGCGTCCTGCAGCCGCGTCGCAAGCGCCTGCGAAACAGCTCGCAC
GCCGCGCAGACCTGCTACCATGTCGCTGGGCCTGGCCCGccttcaccgtc
cccgtccctgtctccgtcatcgccgccgctgctgccgccgccgtcgtctt
cacccgtccTCCCGTGCGTTTCTCTGCCGGATGAGGTGCTCtggtgccgc
gTTATTGACGCGTCCCCGCTCGTGTGGCGCGATGTGTCCTTCCGTCGCGC
CGCCTTTCGCCGCCGCGTTGTCAGCCATGATCGCCAATTGAAGCTGTCCG
AGCGTTGTGGCAGTCGTGCCGTCGCATTGGCCGCGGACGCTGGCAATTTA
CGCGCTCGCTTCTTGAGAACATTCCTGTTCGAACATCAGATCATGAGGGC
TGTCACCATTGCCCAGCCAAACGCGTCGTTGCTCGTTTCTGGAAACGCTC
TCTTGCAGTCGAGACCGTTCGCTCCGTGGACCGATTCGCGACCGCCCGAC
GGTGTATGGATCGGCGTGCATGCCGCCAGGTGGAGCGAGACCGCCATGGG
AGCCACCAGTGTCGACATGGAGCAGACGTCGTTGAGAAGCGTGCAGCCAC
TTGGCCATGATGGCACGCGATTGCCCGGCGGCGCTCTCGTTGGCATCATT
CATGTCAGTGATGCCGTGTACTTCGCTGCTGGTGGCGCTGCTTCCAGCGC
ACCCTGCTGGATTTGGCGCATCGATCGCGCAGTCAGGTTGCAAAGGGCCG
TCAGATGCGCCGGCTTTGTGGGGCTTTGGCCTATGTCTTCTTTTCTCAGT
GAGTTTGTAGTGCAGACTGTGATGTCACAGTAG
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