Ggra9845.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9845.t1
Unique NameGgra9845.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Homology
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A2V3J5I5 (Myb-like protein I n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5I5_9FLOR)

HSP 1 Score: 281 bits (720), Expect = 4.710e-90
Identity = 200/360 (55.56%), Postives = 223/360 (61.94%), Query Frame = 0
Query:    1 MVDTAHAPNYDSLIDRQHKRIVELEADLARCTTHIRKLKLKTRVQDPSSVFAAHDLARLHAAHMHAMLAMAPSLHPITAPHPLQMAAAAXXXA----ANMPLVPG------------AGSQMQGAMHFSGAQLFAGAAAATGGDEEDKAGKSRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXEPQDAAQSESTCPMDDVNDCASSPVSIDDEDCASEEVCVTDVNDRLMSNTAPAPVTSTSCAGMKKDSSLTNLADYDDFMRRITTAVQD---DRGQMFDDRDADLDVDILNGAQKNGQFDDSLLADL 341
            M DTA APNYDSLIDRQHKRI+ELEADLA CT  IR LK  +R  D +S++ AHDLARLHAA MHAMLAM P L  +   HPL  A   XXX     A+MP                A  ++  A   S   LFA A      D+EDKAGK+RYWTAKEHQQFLYAVKLFG KNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKK                           E  DAAQS +                    DC +E+V +T V+DRLMS   PAPV+  S  G+KK+SSLTNLADYDDFMRRITT VQD   D   MFD  ++DLDVDIL+ A K+  FDDSLLADL
Sbjct:    1 MADTAVAPNYDSLIDRQHKRILELEADLASCTDQIRVLK--SRGLDMASLYTAHDLARLHAAQMHAMLAMTP-LPALATAHPLHAAXXXXXXXXXXXAHMPXXXXXXXXXXXXXXXXASPRLNTAPSTS--NLFARARGGAS-DDEDKAGKTRYWTAKEHQQFLYAVKLFGPKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKKRRGQALATATASACNKPKTSTVRVIKSE--DAAQSANV-------------------DC-NEDVQMTSVSDRLMSQVIPAPVSLGS--GLKKNSSLTNLADYDDFMRRITT-VQDTRPDASGMFDHGNSDLDVDILDAASKSNHFDDSLLADL 329          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S0BTN9 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BTN9_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 8.680e-16
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0
Query:  131 DKAGKSRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREA 189
            D  G  RYWTA EH  FL A + FG++NYVAISQFVGTRTPKQVRTH QKY+++L RE+
Sbjct:  104 DAVGNPRYWTADEHSNFLVACEKFGSRNYVAISQFVGTRTPKQVRTHVQKYEVRLIRES 162          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S3ELC7 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELC7_9RHOD)

HSP 1 Score: 85.5 bits (210), Expect = 1.640e-15
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 0
Query:  131 DKAGKSRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREA 189
            D  G  RYWTA EH +FL A + FG++NYVAISQFVG+RTPKQVRTH QKY+++L RE+
Sbjct:  104 DAGGNPRYWTADEHSRFLVACEKFGSRNYVAISQFVGSRTPKQVRTHVQKYEVRLMRES 162          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S0BIZ1 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIZ1_9RHOD)

HSP 1 Score: 80.1 bits (196), Expect = 1.660e-14
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0
Query:  137 RYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREA 189
            RYWT +EH++FL   KL+G KNY AIS  VGTRTPKQVRTHAQKY+M+L RE+
Sbjct:    6 RYWTEEEHRKFLEGRKLYGPKNYAAISAVVGTRTPKQVRTHAQKYEMRLVRES 58          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S1TD26 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD26_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 1.780e-14
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0
Query:  135 KSRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKK 191
            ++RYWT +EH++FL  VKL+G KNY+AIS+ V TRTPKQVRTHAQK+Q +LEREA K
Sbjct:  247 QTRYWTPEEHERFLRGVKLYGDKNYIAISKIVVTRTPKQVRTHAQKFQKRLEREASK 303          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S2ZYC5 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYC5_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 1.180e-12
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0
Query:  137 RYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREA 189
            RYWT +EH++FL   KL+G KNY AIS  V TRTPKQVRTHAQKY+M+L RE+
Sbjct:  112 RYWTEEEHRKFLEGRKLYGPKNYAAISAVVRTRTPKQVRTHAQKYEMRLVRES 164          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S1XF31 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF31_9RHOD)

HSP 1 Score: 73.6 bits (179), Expect = 1.860e-12
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 0
Query:  135 KSRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLERE 188
            +SRYWT +EHQ+F+ A++ FG K+  AIS FVGTR P QVRTHAQKY ++L++E
Sbjct:   70 QSRYWTPEEHQRFIEAIQKFGPKDVRAISNFVGTRNPTQVRTHAQKYFLRLQKE 123          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A6T6PSU7 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6PSU7_9RHOD)

HSP 1 Score: 75.5 bits (184), Expect = 4.050e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0
Query:  137 RYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREA 189
            RYWT +EH++FL   KL+G KNY AIS  V +RTPKQVRTHAQKY+M+L RE+
Sbjct:  111 RYWTEEEHRKFLEGRKLYGPKNYAAISAVVRSRTPKQVRTHAQKYEMRLVRES 163          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S1T4I5 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4I5_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 5.590e-12
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 0
Query:  128 DEEDKAGKSRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLERE 188
            D+  + G +RYW+ +EH +FL  V LFG KN+V I+  VGTRTP+QVRTH+QKY+++L R+
Sbjct:   87 DDSRQEGTTRYWSKEEHDRFLKGVGLFGPKNFVEIAALVGTRTPQQVRTHSQKYEIRLMRK 147          
BLAST of Ggra9845.t1 vs. uniprot
Match: A0A7S0ZBK5 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBK5_9RHOD)

HSP 1 Score: 73.9 bits (180), Expect = 1.490e-11
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0
Query:  133 AGKSRYWTAKEHQQFLYAVKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKK 191
            AG+SRYWT  EH+ FL A+K++G K+   IS+FVGTR   QVRTH QKY MKL REAK+
Sbjct:   71 AGQSRYWTNDEHRLFLEALKIYGHKDLRGISEFVGTRNMTQVRTHTQKYFMKLMREAKR 129          
The following BLAST results are available for this feature:
BLAST of Ggra9845.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5I54.710e-9055.56Myb-like protein I n=1 Tax=Gracilariopsis chorda T... [more]
A0A7S0BTN98.680e-1667.80Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3ELC71.640e-1566.10Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BIZ11.660e-1469.81Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TD261.780e-1468.42Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S2ZYC51.180e-1267.92Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1XF311.860e-1261.11Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A6T6PSU74.050e-1266.04Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1T4I55.590e-1254.10Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0ZBK51.490e-1162.71Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..41
NoneNo IPR availableGENE3D1.10.10.60coord: 139..185
e-value: 1.0E-12
score: 49.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..244
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 129..265
NoneNo IPR availablePANTHERPTHR12802:SF125SUBFAMILY NOT NAMEDcoord: 129..265
IPR001005SANT/Myb domainSMARTSM00717santcoord: 135..184
e-value: 7.3E-11
score: 52.1
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 139..181
e-value: 2.47754E-11
score: 56.0446
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 138..181
e-value: 1.4E-11
score: 44.4
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 139..186
score: 14.071039
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 137..184
e-value: 4.6E-9
score: 34.4
IPR017884SANT domainPROSITEPS51293SANTcoord: 139..188
score: 9.209505
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 135..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:58924..59949 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9845.t1Ggra9845.t1Gracilaria gracilis GNS1m malemRNAtig00000170_pilon 58924..59949 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9845.t1 ID=Ggra9845.t1|Name=Ggra9845.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MVDTAHAPNYDSLIDRQHKRIVELEADLARCTTHIRKLKLKTRVQDPSSV
FAAHDLARLHAAHMHAMLAMAPSLHPITAPHPLQMAAAAAAAAANMPLVP
GAGSQMQGAMHFSGAQLFAGAAAATGGDEEDKAGKSRYWTAKEHQQFLYA
VKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKKRRNQALAAA
AAAAAAASSSASAVQKKEEPQDAAQSESTCPMDDVNDCASSPVSIDDEDC
ASEEVCVTDVNDRLMSNTAPAPVTSTSCAGMKKDSSLTNLADYDDFMRRI
TTAVQDDRGQMFDDRDADLDVDILNGAQKNGQFDDSLLADL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR017884SANT_dom
IPR009057Homeobox-like_sf