Ggra9845.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9845.t1
Unique NameGgra9845.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:58924..59949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708380.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
Evalue2.89e-11
EggNOG OGs2D27E@1|root,2S4XT@2759|Eukaryota
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9845Ggra9845Gracilaria gracilis GNS1m malegenetig00000170_pilon 58924..59949 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9845.t1.stop1Ggra9845.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 58924..58926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9845.t1.CDS1Ggra9845.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 58924..59949 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9845.t1.exon1Ggra9845.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 58924..59949 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9845.t1.start1Ggra9845.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 59947..59949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9845.t1Ggra9845.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 58924..59949 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9845.t1 ID=Ggra9845.t1|Name=Ggra9845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MVDTAHAPNYDSLIDRQHKRIVELEADLARCTTHIRKLKLKTRVQDPSSV
FAAHDLARLHAAHMHAMLAMAPSLHPITAPHPLQMAAAAAAAAANMPLVP
GAGSQMQGAMHFSGAQLFAGAAAATGGDEEDKAGKSRYWTAKEHQQFLYA
VKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKKRRNQALAAA
AAAAAAASSSASAVQKKEEPQDAAQSESTCPMDDVNDCASSPVSIDDEDC
ASEEVCVTDVNDRLMSNTAPAPVTSTSCAGMKKDSSLTNLADYDDFMRRI
TTAVQDDRGQMFDDRDADLDVDILNGAQKNGQFDDSLLADL*
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spliced messenger RNA

>Ggra9845.t1 ID=Ggra9845.t1|Name=Ggra9845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000170_pilon:58924..59949- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGACACCGCCCACGCCCCCAACTACGACTCGCTCATCGATCGTCA
ACACAAGCGCATCGTCGAGTTGGAAGCCGACCTCGCGCGCTGCACCACCC
ACATCCGCAAGCTGAAGCTCAAGACTCGCGTGCAGGACCCGTCCTCCGTG
TTCGCCGCCCACGATCTGGCCCGCCTGCACGCGGCGCACATGCATGCCAT
GCTGGCCATGGCGCCTTCATTGCACCCGATCACCGCGCCACACCCGTTGC
AAATGGCCGCTGCCGCCGCCGCCGCTGCCGCCAACATGCCGCTCGTGCCC
GGCGCTGGCTCGCAGATGCAGGGCGCCATGCACTTTTCGGGCGCGCAGCT
GTTTGCGGGCGCTGCTGCTGCTACTGGTGGCGACGAAGAGGATAAGGCGG
GCAAGAGTCGATACTGGACCGCTAAGGAACATCAACAGTTTTTGTACGCT
GTCAAGCTGTTTGGCGCGAAGAATTATGTCGCTATCAGTCAGTTTGTTGG
CACCAGAACACCCAAACAGGTTCGCACTCATGCGCAAAAGTATCAGATGA
AGCTGGAGAGGGAGGCGAAGAAGAGGAGGAATCAGGCGTTGGCTGCCGCC
GCTGCCGCTGCTGCTGCCGCCTCTTCGTCGGCTAGTGCGGTGCAGAAGAA
GGAGGAGCCGCAGGATGCCGCGCAGAGTGAGAGCACTTGCCCCATGGATG
ATGTGAATGATTGTGCTTCCTCTCCTGTGTCGATTGATGACGAGGACTGT
GCCAGTGAAGAGGTTTGTGTGACGGATGTGAACGATCGATTGATGAGTAA
TACCGCGCCTGCTCCGGTCACTTCCACGTCGTGTGCAGGAATGAAGAAGG
ACTCTAGTTTGACCAATTTGGCCGATTATGACGACTTTATGAGACGAATC
ACTACGGCGGTGCAGGATGATCGCGGTCAGATGTTTGACGACAGGGATGC
GGACTTGGACGTGGACATTTTGAACGGCGCTCAGAAGAATGGACAGTTTG
ATGACTCCCTTCTGGCCGATCTTTGA
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protein sequence of Ggra9845.t1

>Ggra9845.t1 ID=Ggra9845.t1|Name=Ggra9845.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MVDTAHAPNYDSLIDRQHKRIVELEADLARCTTHIRKLKLKTRVQDPSSV
FAAHDLARLHAAHMHAMLAMAPSLHPITAPHPLQMAAAAAAAAANMPLVP
GAGSQMQGAMHFSGAQLFAGAAAATGGDEEDKAGKSRYWTAKEHQQFLYA
VKLFGAKNYVAISQFVGTRTPKQVRTHAQKYQMKLEREAKKRRNQALAAA
AAAAAAASSSASAVQKKEEPQDAAQSESTCPMDDVNDCASSPVSIDDEDC
ASEEVCVTDVNDRLMSNTAPAPVTSTSCAGMKKDSSLTNLADYDDFMRRI
TTAVQDDRGQMFDDRDADLDVDILNGAQKNGQFDDSLLADL*
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mRNA from alignment at tig00000170_pilon:58924..59949-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9845.t1 ID=Ggra9845.t1|Name=Ggra9845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000170_pilon:58924..59949- (Gracilaria gracilis GNS1m male)
ATGGTTGACACCGCCCACGCCCCCAACTACGACTCGCTCATCGATCGTCA
ACACAAGCGCATCGTCGAGTTGGAAGCCGACCTCGCGCGCTGCACCACCC
ACATCCGCAAGCTGAAGCTCAAGACTCGCGTGCAGGACCCGTCCTCCGTG
TTCGCCGCCCACGATCTGGCCCGCCTGCACGCGGCGCACATGCATGCCAT
GCTGGCCATGGCGCCTTCATTGCACCCGATCACCGCGCCACACCCGTTGC
AAATGGCCGCTGCCGCCGCCGCCGCTGCCGCCAACATGCCGCTCGTGCCC
GGCGCTGGCTCGCAGATGCAGGGCGCCATGCACTTTTCGGGCGCGCAGCT
GTTTGCGGGCGCTGCTGCTGCTACTGGTGGCGACGAAGAGGATAAGGCGG
GCAAGAGTCGATACTGGACCGCTAAGGAACATCAACAGTTTTTGTACGCT
GTCAAGCTGTTTGGCGCGAAGAATTATGTCGCTATCAGTCAGTTTGTTGG
CACCAGAACACCCAAACAGGTTCGCACTCATGCGCAAAAGTATCAGATGA
AGCTGGAGAGGGAGGCGAAGAAGAGGAGGAATCAGGCGTTGGCTGCCGCC
GCTGCCGCTGCTGCTGCCGCCTCTTCGTCGGCTAGTGCGGTGCAGAAGAA
GGAGGAGCCGCAGGATGCCGCGCAGAGTGAGAGCACTTGCCCCATGGATG
ATGTGAATGATTGTGCTTCCTCTCCTGTGTCGATTGATGACGAGGACTGT
GCCAGTGAAGAGGTTTGTGTGACGGATGTGAACGATCGATTGATGAGTAA
TACCGCGCCTGCTCCGGTCACTTCCACGTCGTGTGCAGGAATGAAGAAGG
ACTCTAGTTTGACCAATTTGGCCGATTATGACGACTTTATGAGACGAATC
ACTACGGCGGTGCAGGATGATCGCGGTCAGATGTTTGACGACAGGGATGC
GGACTTGGACGTGGACATTTTGAACGGCGCTCAGAAGAATGGACAGTTTG
ATGACTCCCTTCTGGCCGATCTTTGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:58924..59949-

>Ggra9845.t1 ID=Ggra9845.t1|Name=Ggra9845.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000170_pilon:58924..59949- (Gracilaria gracilis GNS1m male)
ATGGTTGACACCGCCCACGCCCCCAACTACGACTCGCTCATCGATCGTCA
ACACAAGCGCATCGTCGAGTTGGAAGCCGACCTCGCGCGCTGCACCACCC
ACATCCGCAAGCTGAAGCTCAAGACTCGCGTGCAGGACCCGTCCTCCGTG
TTCGCCGCCCACGATCTGGCCCGCCTGCACGCGGCGCACATGCATGCCAT
GCTGGCCATGGCGCCTTCATTGCACCCGATCACCGCGCCACACCCGTTGC
AAATGGCCGCTGCCGCCGCCGCCGCTGCCGCCAACATGCCGCTCGTGCCC
GGCGCTGGCTCGCAGATGCAGGGCGCCATGCACTTTTCGGGCGCGCAGCT
GTTTGCGGGCGCTGCTGCTGCTACTGGTGGCGACGAAGAGGATAAGGCGG
GCAAGAGTCGATACTGGACCGCTAAGGAACATCAACAGTTTTTGTACGCT
GTCAAGCTGTTTGGCGCGAAGAATTATGTCGCTATCAGTCAGTTTGTTGG
CACCAGAACACCCAAACAGGTTCGCACTCATGCGCAAAAGTATCAGATGA
AGCTGGAGAGGGAGGCGAAGAAGAGGAGGAATCAGGCGTTGGCTGCCGCC
GCTGCCGCTGCTGCTGCCGCCTCTTCGTCGGCTAGTGCGGTGCAGAAGAA
GGAGGAGCCGCAGGATGCCGCGCAGAGTGAGAGCACTTGCCCCATGGATG
ATGTGAATGATTGTGCTTCCTCTCCTGTGTCGATTGATGACGAGGACTGT
GCCAGTGAAGAGGTTTGTGTGACGGATGTGAACGATCGATTGATGAGTAA
TACCGCGCCTGCTCCGGTCACTTCCACGTCGTGTGCAGGAATGAAGAAGG
ACTCTAGTTTGACCAATTTGGCCGATTATGACGACTTTATGAGACGAATC
ACTACGGCGGTGCAGGATGATCGCGGTCAGATGTTTGACGACAGGGATGC
GGACTTGGACGTGGACATTTTGAACGGCGCTCAGAAGAATGGACAGTTTG
ATGACTCCCTTCTGGCCGATCTTTGA
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