Ggra9840.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9840.t1
Unique Name	Ggra9840.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	580

Homology

[Close]

BLAST of Ggra9840.t1 vs. uniprot
Match: A0A2V3J6C9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6C9_9FLOR)

HSP 1 Score: 514 bits (1324), Expect = 3.010e-173
Identity = 284/586 (48.46%), Postives = 381/586 (65.02%), Query Frame = 0

Query:    1 MSTTIIPEQAARCCDELRVLACDFEGDPLKLEPSVDHCIKLMHSHASEVKVQRSATLALIVLCEKHKMAEFMGGKGLFPVVIRTLNGFSMDEALVKNVVLLVRSLLLVESNRSIFCEHGGFTALFSVMVAFPDRESIQCSACALIATICYASESRRLLACANGALSLLMDVLCRYQGHKHYKVQSNACMALRNLSLDPVVCKEILSQSGFLQCIGNVVKPYSNAHAVEEALGVCLNIFTA-PALQSSVILENSSHYMVCCVMEFLGSTVRSFRRKGKCHEIGFALLRACEPLEKDRPDEKGGTEKLRIAVLYAAAYASNRSPSSVNVVSSACLLIRTMVIDSTNRELFGELDRGVSTLVKSIAFLSHSPVHLEHALLALGNAVFDSPVGKLKACEAGALRFISNAMKINNTNAAVAEAGLMAIHGLCIESEKVGNLASSLKFHDLCTETMSAFETSPKIQESGLAALLSMGSGPQAKKRLCASNAKLAAERAADLYPYSKNILALRDKLERFGANVNDESQRDSRA------AVSDNRRGLEKLESNKGRRLHENHEQPKHSTLESFSRRILSKLPSLQNMRSKTD 579
            M+T    + AA CC+ LR++ CDF+ D   L+ S DH +KLM +HA++++VQ+ ATLALIVLCE+ +MA ++G  G    ++   N F  DEALVKNVVLL+RSL+++E NR  FCEHGG   L S M+ FP R S+QCSA ALIA+ICY SESRRLL  ANG + LL+ +L R+Q   + KV SNACMALRN+SL+ + C+EIL     L+ + ++V   S   A EEA+GVCLNI T    ++ +  L      ++  V++F+  T  SFR   KCHE+ F LLR C+ L  +  D K  +E LR+ V YA  Y +N S  SV VVSS C+LIR MVID+ +R+ FGE+ + + TLV+ +AFL + P H+E +LLALGNAVFD+PVGKL+ACE+GALR I   MK N   AAV+E+GLMAI  LCI+S+K+G +ASSL+FHDLC   +  FE SP IQE GLAA++SMG G QA K + AS A  AA+RA  LYP S +I+AL  KL        D  +  +RA      ++  + R  ++ E  K +      +  K    ESF  RILSKLPS    ++K++
Sbjct:   61 MTTAKSADDAAACCNSLRIIVCDFQTDVNGLQQSADHALKLMKAHATDLRVQKCATLALIVLCEQQRMAAYIGQIGAMQHLVEIGNTFLKDEALVKNVVLLMRSLVILEPNRINFCEHGGIGMLTSAMIEFPARASLQCSATALIASICYESESRRLLVTANGIVPLLIRILVRFQESGNGKVLSNACMALRNISLESIACEEILFHDSSLRNVCSIVVAESAPSAAEEAIGVCLNIVTVLECIKDTAELHKIVQTVLHAVIKFMSKTAMSFRTHVKCHELAFGLLRVCQSLPAENKDTKVKSEILRLTVTYAIEYTTNGSSRSVQVVSSVCILIRKMVIDACSRKTFGEIPQSIPTLVRCVAFLKNHPTHVEQSLLALGNAVFDAPVGKLRACESGALRIIGETMKANKNAAAVSESGLMAIQALCIDSDKMGTVASSLRFHDLCVLAIKTFEESPTIQERGLAAIISMGCGQQAMKNIHASEALDAADRAVSLYPCSNSIVALCAKLHAMVGTEKDVFKDQTRALRERSYSIDAHSRYTDQKEDEKSQ------DTGKKGGRESFPSRILSKLPSRHRPKNKSE 640

The following BLAST results are available for this feature:

BLAST of Ggra9840.t1 vs. uniprot

BLAST of Ggra9840.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J6C9	3.010e-173	48.46	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000225	Armadillo	SMART	SM00185	arm_5	coord: 340..383 e-value: 150.0 score: 4.2 coord: 107..150 e-value: 86.0 score: 6.0 coord: 152..196 e-value: 0.01 score: 25.0
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 7..275 e-value: 7.0E-24 score: 86.0
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 305..494 e-value: 1.2E-10 score: 42.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 558..579
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 519..557
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 519..579
None	No IPR available	PANTHER	PTHR22895	UNCHARACTERIZED	coord: 37..226
None	No IPR available	PANTHER	PTHR22895:SF7	PROTEIN AARDVARK	coord: 37..226
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 25..476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:48730..50469 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9840.t1	Ggra9840.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000170_pilon 48730..50469 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9840.t1 ID=Ggra9840.t1|Name=Ggra9840.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=580bp
MSTTIIPEQAARCCDELRVLACDFEGDPLKLEPSVDHCIKLMHSHASEVK
VQRSATLALIVLCEKHKMAEFMGGKGLFPVVIRTLNGFSMDEALVKNVVL
LVRSLLLVESNRSIFCEHGGFTALFSVMVAFPDRESIQCSACALIATICY
ASESRRLLACANGALSLLMDVLCRYQGHKHYKVQSNACMALRNLSLDPVV
CKEILSQSGFLQCIGNVVKPYSNAHAVEEALGVCLNIFTAPALQSSVILE
NSSHYMVCCVMEFLGSTVRSFRRKGKCHEIGFALLRACEPLEKDRPDEKG
GTEKLRIAVLYAAAYASNRSPSSVNVVSSACLLIRTMVIDSTNRELFGEL
DRGVSTLVKSIAFLSHSPVHLEHALLALGNAVFDSPVGKLKACEAGALRF
ISNAMKINNTNAAVAEAGLMAIHGLCIESEKVGNLASSLKFHDLCTETMS
AFETSPKIQESGLAALLSMGSGPQAKKRLCASNAKLAAERAADLYPYSKN
ILALRDKLERFGANVNDESQRDSRAAVSDNRRGLEKLESNKGRRLHENHE
QPKHSTLESFSRRILSKLPSLQNMRSKTD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000225	Armadillo
IPR011989	ARM-like
IPR016024	ARM-type_fold