Ggra9840.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9840.t1
Unique Name	Ggra9840.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	580

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:48730..50469 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35128.Thaps1166
Max annot lvl	2836\|Bacillariophyta
Evalue	3.45e-05
EggNOG OGs	2EQ6Y@1\|root,2ST90@2759\|Eukaryota,2XE6R@2836\|Bacillariophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9840	Ggra9840	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 48730..50469 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9840.t1.start1	Ggra9840.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 48730..48732 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9840.t1.CDS1	Ggra9840.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 48730..50469 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9840.t1.exon1	Ggra9840.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 48730..50469 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9840.t1.stop1	Ggra9840.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 50467..50469 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9840.t1	Ggra9840.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 48730..50469 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:48730..50469+
coding sequence from alignment at tig00000170_pilon:48730..50469+

mRNA sequence

>Ggra9840.t1 ID=Ggra9840.t1|Name=Ggra9840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=580bp
MSTTIIPEQAARCCDELRVLACDFEGDPLKLEPSVDHCIKLMHSHASEVK
VQRSATLALIVLCEKHKMAEFMGGKGLFPVVIRTLNGFSMDEALVKNVVL
LVRSLLLVESNRSIFCEHGGFTALFSVMVAFPDRESIQCSACALIATICY
ASESRRLLACANGALSLLMDVLCRYQGHKHYKVQSNACMALRNLSLDPVV
CKEILSQSGFLQCIGNVVKPYSNAHAVEEALGVCLNIFTAPALQSSVILE
NSSHYMVCCVMEFLGSTVRSFRRKGKCHEIGFALLRACEPLEKDRPDEKG
GTEKLRIAVLYAAAYASNRSPSSVNVVSSACLLIRTMVIDSTNRELFGEL
DRGVSTLVKSIAFLSHSPVHLEHALLALGNAVFDSPVGKLKACEAGALRF
ISNAMKINNTNAAVAEAGLMAIHGLCIESEKVGNLASSLKFHDLCTETMS
AFETSPKIQESGLAALLSMGSGPQAKKRLCASNAKLAAERAADLYPYSKN
ILALRDKLERFGANVNDESQRDSRAAVSDNRRGLEKLESNKGRRLHENHE
QPKHSTLESFSRRILSKLPSLQNMRSKTD*

spliced messenger RNA

>Ggra9840.t1 ID=Ggra9840.t1|Name=Ggra9840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000170_pilon:48730..50469+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACTACCATTATTCCAGAACAAGCAGCTCGATGCTGTGATGAGCT
TCGTGTTTTGGCCTGCGACTTTGAAGGCGACCCTCTCAAACTAGAGCCCA
GTGTAGATCATTGTATAAAACTGATGCACTCCCATGCTTCTGAGGTCAAG
GTACAGAGGTCTGCAACTTTAGCACTCATAGTGCTTTGTGAGAAACACAA
GATGGCAGAATTCATGGGCGGGAAAGGGCTTTTCCCAGTAGTGATCAGGA
CACTAAATGGATTTTCCATGGATGAAGCCCTTGTCAAAAATGTCGTGCTT
CTAGTCAGATCGCTATTACTTGTGGAATCGAATCGAAGCATATTCTGTGA
ACACGGAGGATTCACCGCTCTATTTTCGGTCATGGTTGCGTTTCCTGATA
GAGAGTCGATTCAATGCTCTGCCTGTGCACTGATTGCAACCATATGTTAT
GCAAGTGAAAGTCGAAGGCTTTTGGCCTGCGCTAATGGGGCTCTGTCTTT
GTTGATGGATGTACTTTGTCGATATCAAGGTCATAAACACTACAAGGTTC
AGTCCAACGCGTGCATGGCCCTGCGCAATCTATCCTTGGACCCCGTGGTT
TGCAAAGAAATCTTGTCTCAGAGTGGCTTTTTACAATGCATAGGGAACGT
AGTGAAACCATATTCCAACGCGCATGCTGTCGAGGAGGCACTTGGAGTTT
GTCTGAATATATTCACGGCTCCAGCTCTACAGAGCTCGGTGATTTTGGAA
AACTCCTCCCATTATATGGTTTGTTGTGTGATGGAGTTTCTTGGTTCAAC
GGTGAGAAGCTTCCGACGCAAAGGCAAATGTCATGAAATAGGATTTGCAC
TCTTGCGGGCATGTGAGCCTCTGGAAAAGGACCGGCCAGACGAGAAAGGA
GGAACAGAAAAACTACGGATAGCTGTTCTATATGCTGCGGCGTACGCATC
AAATCGGTCGCCCAGCTCTGTGAATGTTGTTTCAAGTGCATGTCTACTCA
TTCGCACTATGGTCATCGACTCTACCAACAGGGAGTTGTTTGGAGAACTA
GATCGAGGTGTCTCAACTCTAGTGAAATCAATTGCATTTCTCAGTCACAG
TCCAGTTCATCTCGAACATGCATTGCTTGCCTTGGGAAATGCGGTTTTCG
ATTCTCCTGTTGGTAAGCTGAAAGCATGTGAAGCCGGTGCGTTGCGATTC
ATTTCAAATGCCATGAAGATAAACAACACAAATGCCGCTGTGGCAGAAGC
AGGTCTCATGGCTATCCACGGTTTGTGTATCGAAAGCGAGAAAGTGGGGA
ATTTGGCATCCTCTCTGAAGTTTCATGACTTGTGCACTGAAACAATGAGT
GCCTTTGAGACAAGCCCAAAGATTCAGGAAAGTGGCCTGGCCGCCTTGCT
CAGCATGGGATCTGGCCCGCAGGCCAAAAAACGTCTATGTGCGAGCAACG
CAAAGCTGGCTGCAGAACGGGCAGCAGACTTGTATCCGTACTCAAAGAAC
ATTCTTGCTCTCCGTGACAAACTCGAAAGGTTTGGAGCGAATGTAAATGA
TGAGAGTCAAAGGGATTCGCGTGCTGCCGTTTCTGACAACAGGCGTGGGC
TCGAGAAGCTTGAAAGCAATAAAGGACGTCGACTCCATGAGAACCATGAG
CAGCCAAAGCACTCAACTCTTGAGTCTTTCTCACGCAGAATCCTCAGTAA
ACTTCCATCGCTACAAAACATGCGAAGCAAGACCGATTAG

protein sequence of Ggra9840.t1

>Ggra9840.t1 ID=Ggra9840.t1|Name=Ggra9840.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=580bp
MSTTIIPEQAARCCDELRVLACDFEGDPLKLEPSVDHCIKLMHSHASEVK
VQRSATLALIVLCEKHKMAEFMGGKGLFPVVIRTLNGFSMDEALVKNVVL
LVRSLLLVESNRSIFCEHGGFTALFSVMVAFPDRESIQCSACALIATICY
ASESRRLLACANGALSLLMDVLCRYQGHKHYKVQSNACMALRNLSLDPVV
CKEILSQSGFLQCIGNVVKPYSNAHAVEEALGVCLNIFTAPALQSSVILE
NSSHYMVCCVMEFLGSTVRSFRRKGKCHEIGFALLRACEPLEKDRPDEKG
GTEKLRIAVLYAAAYASNRSPSSVNVVSSACLLIRTMVIDSTNRELFGEL
DRGVSTLVKSIAFLSHSPVHLEHALLALGNAVFDSPVGKLKACEAGALRF
ISNAMKINNTNAAVAEAGLMAIHGLCIESEKVGNLASSLKFHDLCTETMS
AFETSPKIQESGLAALLSMGSGPQAKKRLCASNAKLAAERAADLYPYSKN
ILALRDKLERFGANVNDESQRDSRAAVSDNRRGLEKLESNKGRRLHENHE
QPKHSTLESFSRRILSKLPSLQNMRSKTD*

mRNA from alignment at tig00000170_pilon:48730..50469+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9840.t1 ID=Ggra9840.t1|Name=Ggra9840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000170_pilon:48730..50469+ (Gracilaria gracilis GNS1m male)
ATGTCCACTACCATTATTCCAGAACAAGCAGCTCGATGCTGTGATGAGCT
TCGTGTTTTGGCCTGCGACTTTGAAGGCGACCCTCTCAAACTAGAGCCCA
GTGTAGATCATTGTATAAAACTGATGCACTCCCATGCTTCTGAGGTCAAG
GTACAGAGGTCTGCAACTTTAGCACTCATAGTGCTTTGTGAGAAACACAA
GATGGCAGAATTCATGGGCGGGAAAGGGCTTTTCCCAGTAGTGATCAGGA
CACTAAATGGATTTTCCATGGATGAAGCCCTTGTCAAAAATGTCGTGCTT
CTAGTCAGATCGCTATTACTTGTGGAATCGAATCGAAGCATATTCTGTGA
ACACGGAGGATTCACCGCTCTATTTTCGGTCATGGTTGCGTTTCCTGATA
GAGAGTCGATTCAATGCTCTGCCTGTGCACTGATTGCAACCATATGTTAT
GCAAGTGAAAGTCGAAGGCTTTTGGCCTGCGCTAATGGGGCTCTGTCTTT
GTTGATGGATGTACTTTGTCGATATCAAGGTCATAAACACTACAAGGTTC
AGTCCAACGCGTGCATGGCCCTGCGCAATCTATCCTTGGACCCCGTGGTT
TGCAAAGAAATCTTGTCTCAGAGTGGCTTTTTACAATGCATAGGGAACGT
AGTGAAACCATATTCCAACGCGCATGCTGTCGAGGAGGCACTTGGAGTTT
GTCTGAATATATTCACGGCTCCAGCTCTACAGAGCTCGGTGATTTTGGAA
AACTCCTCCCATTATATGGTTTGTTGTGTGATGGAGTTTCTTGGTTCAAC
GGTGAGAAGCTTCCGACGCAAAGGCAAATGTCATGAAATAGGATTTGCAC
TCTTGCGGGCATGTGAGCCTCTGGAAAAGGACCGGCCAGACGAGAAAGGA
GGAACAGAAAAACTACGGATAGCTGTTCTATATGCTGCGGCGTACGCATC
AAATCGGTCGCCCAGCTCTGTGAATGTTGTTTCAAGTGCATGTCTACTCA
TTCGCACTATGGTCATCGACTCTACCAACAGGGAGTTGTTTGGAGAACTA
GATCGAGGTGTCTCAACTCTAGTGAAATCAATTGCATTTCTCAGTCACAG
TCCAGTTCATCTCGAACATGCATTGCTTGCCTTGGGAAATGCGGTTTTCG
ATTCTCCTGTTGGTAAGCTGAAAGCATGTGAAGCCGGTGCGTTGCGATTC
ATTTCAAATGCCATGAAGATAAACAACACAAATGCCGCTGTGGCAGAAGC
AGGTCTCATGGCTATCCACGGTTTGTGTATCGAAAGCGAGAAAGTGGGGA
ATTTGGCATCCTCTCTGAAGTTTCATGACTTGTGCACTGAAACAATGAGT
GCCTTTGAGACAAGCCCAAAGATTCAGGAAAGTGGCCTGGCCGCCTTGCT
CAGCATGGGATCTGGCCCGCAGGCCAAAAAACGTCTATGTGCGAGCAACG
CAAAGCTGGCTGCAGAACGGGCAGCAGACTTGTATCCGTACTCAAAGAAC
ATTCTTGCTCTCCGTGACAAACTCGAAAGGTTTGGAGCGAATGTAAATGA
TGAGAGTCAAAGGGATTCGCGTGCTGCCGTTTCTGACAACAGGCGTGGGC
TCGAGAAGCTTGAAAGCAATAAAGGACGTCGACTCCATGAGAACCATGAG
CAGCCAAAGCACTCAACTCTTGAGTCTTTCTCACGCAGAATCCTCAGTAA
ACTTCCATCGCTACAAAACATGCGAAGCAAGACCGATTAG

Coding sequence (CDS) from alignment at tig00000170_pilon:48730..50469+

>Ggra9840.t1 ID=Ggra9840.t1|Name=Ggra9840.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1740bp|location=Sequence derived from alignment at tig00000170_pilon:48730..50469+ (Gracilaria gracilis GNS1m male)
ATGTCCACTACCATTATTCCAGAACAAGCAGCTCGATGCTGTGATGAGCT
TCGTGTTTTGGCCTGCGACTTTGAAGGCGACCCTCTCAAACTAGAGCCCA
GTGTAGATCATTGTATAAAACTGATGCACTCCCATGCTTCTGAGGTCAAG
GTACAGAGGTCTGCAACTTTAGCACTCATAGTGCTTTGTGAGAAACACAA
GATGGCAGAATTCATGGGCGGGAAAGGGCTTTTCCCAGTAGTGATCAGGA
CACTAAATGGATTTTCCATGGATGAAGCCCTTGTCAAAAATGTCGTGCTT
CTAGTCAGATCGCTATTACTTGTGGAATCGAATCGAAGCATATTCTGTGA
ACACGGAGGATTCACCGCTCTATTTTCGGTCATGGTTGCGTTTCCTGATA
GAGAGTCGATTCAATGCTCTGCCTGTGCACTGATTGCAACCATATGTTAT
GCAAGTGAAAGTCGAAGGCTTTTGGCCTGCGCTAATGGGGCTCTGTCTTT
GTTGATGGATGTACTTTGTCGATATCAAGGTCATAAACACTACAAGGTTC
AGTCCAACGCGTGCATGGCCCTGCGCAATCTATCCTTGGACCCCGTGGTT
TGCAAAGAAATCTTGTCTCAGAGTGGCTTTTTACAATGCATAGGGAACGT
AGTGAAACCATATTCCAACGCGCATGCTGTCGAGGAGGCACTTGGAGTTT
GTCTGAATATATTCACGGCTCCAGCTCTACAGAGCTCGGTGATTTTGGAA
AACTCCTCCCATTATATGGTTTGTTGTGTGATGGAGTTTCTTGGTTCAAC
GGTGAGAAGCTTCCGACGCAAAGGCAAATGTCATGAAATAGGATTTGCAC
TCTTGCGGGCATGTGAGCCTCTGGAAAAGGACCGGCCAGACGAGAAAGGA
GGAACAGAAAAACTACGGATAGCTGTTCTATATGCTGCGGCGTACGCATC
AAATCGGTCGCCCAGCTCTGTGAATGTTGTTTCAAGTGCATGTCTACTCA
TTCGCACTATGGTCATCGACTCTACCAACAGGGAGTTGTTTGGAGAACTA
GATCGAGGTGTCTCAACTCTAGTGAAATCAATTGCATTTCTCAGTCACAG
TCCAGTTCATCTCGAACATGCATTGCTTGCCTTGGGAAATGCGGTTTTCG
ATTCTCCTGTTGGTAAGCTGAAAGCATGTGAAGCCGGTGCGTTGCGATTC
ATTTCAAATGCCATGAAGATAAACAACACAAATGCCGCTGTGGCAGAAGC
AGGTCTCATGGCTATCCACGGTTTGTGTATCGAAAGCGAGAAAGTGGGGA
ATTTGGCATCCTCTCTGAAGTTTCATGACTTGTGCACTGAAACAATGAGT
GCCTTTGAGACAAGCCCAAAGATTCAGGAAAGTGGCCTGGCCGCCTTGCT
CAGCATGGGATCTGGCCCGCAGGCCAAAAAACGTCTATGTGCGAGCAACG
CAAAGCTGGCTGCAGAACGGGCAGCAGACTTGTATCCGTACTCAAAGAAC
ATTCTTGCTCTCCGTGACAAACTCGAAAGGTTTGGAGCGAATGTAAATGA
TGAGAGTCAAAGGGATTCGCGTGCTGCCGTTTCTGACAACAGGCGTGGGC
TCGAGAAGCTTGAAAGCAATAAAGGACGTCGACTCCATGAGAACCATGAG
CAGCCAAAGCACTCAACTCTTGAGTCTTTCTCACGCAGAATCCTCAGTAA
ACTTCCATCGCTACAAAACATGCGAAGCAAGACCGATTAG