Ggra9812.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9812.t1
Unique Name	Ggra9812.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	563

Homology

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BLAST of Ggra9812.t1 vs. uniprot
Match: A0A2V3IG91 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG91_9FLOR)

HSP 1 Score: 481 bits (1239), Expect = 1.480e-161
Identity = 278/562 (49.47%), Postives = 368/562 (65.48%), Query Frame = 0

Query:    8 KITVVETPLGGTASVRRTPTAESTH--NANDLP-PRVRSLKCVLYQTRHLMRYHFEKVDYVAQPSTSISSQDVFHILIVSVSQLIIFLPLRNEPITYTASERTLLLFWPLATFARIHIMLHTLWPPPNDGVALFYKFAVSLFALIFSLTIPVAFSTTRVITALSAFFIIFIPSVILFHNSWCEPLLQDVTNRANQLALIAGAHMLVSAPYFATTFVSTTFGVKTMYWAGFAASVFMHFAPHAAFFWLHRGRRRVQTHVPPRLFCNYEALRLMSHGCFVSACVLLLIHGVDLVQGTSIRVSHVYGVAVLSLISLIALHSIHFIDTSASNHLNPSMIASVCSTFLFSVLHLFILFFSTACAHLMSVASNAKGELAPSTRKFLSVAWACSMLVTTILSAFRTRLHNVSRIIRLSVRLVMTAALCSGMVQSKVSPIVLMVVFALFVVVITICDFIVERYESHNISPFVKNGEPFSSFKLYESAALGMPLDLNGDVSSVLDELECRNAEAVYPHLECLKQRLLVNDETRLFPTESHFDT-----SSASTGAASTSEEESRPVAVIVV 561
            KITVVET LG TAS    PT    H    +  P P+ +SL  VL Q R LMRY +  +D+VAQPST ISS D FHIL++++SQL  FLPLR  P+T+++    LLLFWPL              P PNDG+ LFY   ++LF L FSLT P AF+TTRVITA+SAF II +PS++L   +W EPLL+DV+NRANQ+ L A  H  VS PY AT FVS   GVK +YWA FAAS+F H APHA FFW+HRG +R QTH+PPRL  N     ++S  CF +AC+LLLIHG+DL Q  S   +H+Y VAVL+ +SL++LH+IH +D S      P+  A++ STFLF+ LH F+   S + A LM+VAS+   +L  S RK +SV+W  ++++TT+L+A +TRL ++SRIIRLSVRL++   L + M  S +S IV ++VF    +VITI DF++ RYESH+I+PFV NG+ F++F+ YE     + L+ + DVS ++ ELE +    V PHL+  +QRLL N + RL P  +  DT     SS        SE +SR  AVIVV
Sbjct:   20 KITVVETALGATAS----PTLAPLHPPEPSSAPAPKTKSLASVLCQRRWLMRYFYRGLDFVAQPSTKISSDDAFHILLITLSQLATFLPLRIAPLTFSSVHTALLLFWPLGXXXXXXXXXXXXXPSPNDGLHLFYTSFIALFTLTFSLTAPTAFTTTRVITAVSAFLIIVLPSLLLLLYAWREPLLKDVSNRANQIVLYALIHAFVSTPYLATIFVSPLSGVKALYWAAFAASLFAHIAPHALFFWMHRGNKREQTHIPPRLTYNQHGYGMLSLTCFAAACMLLLIHGIDLTQQLSKNTTHMYAVAVLAFLSLLSLHNIHLLDISPVPTPLPTSFAAITSTFLFAPLHFFVFLLSVSYAKLMTVASDPTSDLTFSLRKLVSVSWTAAIIITTVLAALQTRLRDISRIIRLSVRLIIAVILGAAMPFSDMSVIVFILVFXXXXIVITIIDFVLARYESHSIAPFVTNGQQFTTFRPYEEPLPQIRLEPDADVSDLIRELESKTDGRVRPHLDAFRQRLLANKDIRLMPVATLQDTLADASSSVRDATRQVSESDSRHDAVIVV 577

The following BLAST results are available for this feature:

BLAST of Ggra9812.t1 vs. uniprot

BLAST of Ggra9812.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IG91	1.480e-161	49.47	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 403..413
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 436..456
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 414..430
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 164..185
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 197..216
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 217..227
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 159..163
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 338..366
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..76
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 136..158
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 95..105
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 305..326
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 125..135
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 186..196
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 327..337
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 106..124
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 272..293
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 431..435
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 457..562
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 77..94
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 228..251
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 386..402
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 252..271
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 294..304
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 367..385
None	No IPR available	TMHMM	TMhelix		coord: 414..431
None	No IPR available	TMHMM	TMhelix		coord: 197..219
None	No IPR available	TMHMM	TMhelix		coord: 136..158
None	No IPR available	TMHMM	TMhelix		coord: 229..251
None	No IPR available	TMHMM	TMhelix		coord: 163..185
None	No IPR available	TMHMM	TMhelix		coord: 346..368
None	No IPR available	TMHMM	TMhelix		coord: 436..455
None	No IPR available	TMHMM	TMhelix		coord: 383..401
None	No IPR available	TMHMM	TMhelix		coord: 303..325
None	No IPR available	TMHMM	TMhelix		coord: 271..293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000236_pilon	contig	tig00000236_pilon:65988..67776 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9812.t1	Ggra9812.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000236_pilon 65988..67776 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9812.t1 ID=Ggra9812.t1|Name=Ggra9812.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=563bp
MSEQSPSKITVVETPLGGTASVRRTPTAESTHNANDLPPRVRSLKCVLYQ
TRHLMRYHFEKVDYVAQPSTSISSQDVFHILIVSVSQLIIFLPLRNEPIT
YTASERTLLLFWPLATFARIHIMLHTLWPPPNDGVALFYKFAVSLFALIF
SLTIPVAFSTTRVITALSAFFIIFIPSVILFHNSWCEPLLQDVTNRANQL
ALIAGAHMLVSAPYFATTFVSTTFGVKTMYWAGFAASVFMHFAPHAAFFW
LHRGRRRVQTHVPPRLFCNYEALRLMSHGCFVSACVLLLIHGVDLVQGTS
IRVSHVYGVAVLSLISLIALHSIHFIDTSASNHLNPSMIASVCSTFLFSV
LHLFILFFSTACAHLMSVASNAKGELAPSTRKFLSVAWACSMLVTTILSA
FRTRLHNVSRIIRLSVRLVMTAALCSGMVQSKVSPIVLMVVFALFVVVIT
ICDFIVERYESHNISPFVKNGEPFSSFKLYESAALGMPLDLNGDVSSVLD
ELECRNAEAVYPHLECLKQRLLVNDETRLFPTESHFDTSSASTGAASTSE
EESRPVAVIVVS*