Ggra9812.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9812.t1
Unique NameGgra9812.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length563
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000236_piloncontigtig00000236_pilon:65988..67776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9812Ggra9812Gracilaria gracilis GNS1m malegenetig00000236_pilon 65988..67776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9812.t1Ggra9812.t1Gracilaria gracilis GNS1m malepolypeptidetig00000236_pilon 65988..67776 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9812.t1.stop1Ggra9812.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000236_pilon 65988..65990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9812.t1.CDS1Ggra9812.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000236_pilon 65988..66796 -
Ggra9812.t1.CDS2Ggra9812.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000236_pilon 66897..67776 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9812.t1.exon1Ggra9812.t1.exon1Gracilaria gracilis GNS1m maleexontig00000236_pilon 65988..66796 -
Ggra9812.t1.exon2Ggra9812.t1.exon2Gracilaria gracilis GNS1m maleexontig00000236_pilon 66897..67776 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9812.t1.intron1Ggra9812.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000236_pilon 66797..66896 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9812.t1.start1Ggra9812.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000236_pilon 67774..67776 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9812.t1 ID=Ggra9812.t1|Name=Ggra9812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=563bp
MSEQSPSKITVVETPLGGTASVRRTPTAESTHNANDLPPRVRSLKCVLYQ
TRHLMRYHFEKVDYVAQPSTSISSQDVFHILIVSVSQLIIFLPLRNEPIT
YTASERTLLLFWPLATFARIHIMLHTLWPPPNDGVALFYKFAVSLFALIF
SLTIPVAFSTTRVITALSAFFIIFIPSVILFHNSWCEPLLQDVTNRANQL
ALIAGAHMLVSAPYFATTFVSTTFGVKTMYWAGFAASVFMHFAPHAAFFW
LHRGRRRVQTHVPPRLFCNYEALRLMSHGCFVSACVLLLIHGVDLVQGTS
IRVSHVYGVAVLSLISLIALHSIHFIDTSASNHLNPSMIASVCSTFLFSV
LHLFILFFSTACAHLMSVASNAKGELAPSTRKFLSVAWACSMLVTTILSA
FRTRLHNVSRIIRLSVRLVMTAALCSGMVQSKVSPIVLMVVFALFVVVIT
ICDFIVERYESHNISPFVKNGEPFSSFKLYESAALGMPLDLNGDVSSVLD
ELECRNAEAVYPHLECLKQRLLVNDETRLFPTESHFDTSSASTGAASTSE
EESRPVAVIVVS*
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spliced messenger RNA

>Ggra9812.t1 ID=Ggra9812.t1|Name=Ggra9812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000236_pilon:65988..67776- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAGCAGTCTCCCAGCAAGATTACCGTCGTTGAAACTCCACTTGG
TGGTACTGCTTCGGTGCGAAGAACTCCCACTGCTGAGTCGACTCACAATG
CTAACGATCTTCCCCCACGGGTTCGCAGTTTGAAATGTGTTTTGTACCAA
ACACGTCATTTGATGCGGTACCATTTCGAAAAAGTGGACTACGTCGCCCA
GCCATCAACAAGCATTTCGTCTCAAGATGTATTCCATATCCTTATCGTGT
CGGTCTCGCAGCTTATCATCTTTCTACCCCTAAGGAACGAACCTATCACA
TATACGGCGTCTGAGAGAACTCTGCTTCTGTTTTGGCCTCTTGCGACTTT
TGCGAGGATTCACATCATGCTCCACACTCTTTGGCCTCCTCCAAATGACG
GTGTTGCCCTTTTCTACAAGTTTGCAGTTTCTCTCTTTGCCCTCATCTTC
TCGCTGACTATTCCAGTGGCATTTTCGACGACGCGAGTAATAACAGCATT
GTCTGCCTTCTTCATTATATTTATACCATCTGTGATTCTATTCCATAACT
CATGGTGTGAACCTCTACTACAAGACGTCACCAACCGAGCGAACCAACTG
GCGCTCATTGCTGGAGCGCACATGCTGGTCTCTGCACCGTACTTTGCTAC
AACGTTTGTGTCTACAACGTTTGGGGTAAAGACAATGTATTGGGCTGGTT
TCGCTGCTTCAGTGTTCATGCACTTTGCACCCCATGCTGCGTTTTTCTGG
CTTCATCGAGGGAGAAGACGAGTACAGACGCACGTCCCTCCGCGCTTGTT
CTGTAATTATGAAGCGCTTCGATTGATGTCGCATGGCTGCTTTGTGAGTG
CATGCGTGTTGTTATTAATACATGGGGTCGATCTCGTACAGGGTACTTCA
ATACGCGTGAGTCATGTGTATGGAGTTGCGGTGTTGAGCTTAATTTCATT
GATCGCTCTTCACTCTATACATTTCATCGATACTTCAGCATCGAATCATC
TCAATCCGAGTATGATTGCTTCGGTGTGCAGCACGTTTCTGTTCAGCGTA
CTTCACTTGTTTATTTTGTTCTTCTCCACTGCATGTGCTCACTTGATGTC
GGTGGCTTCAAATGCTAAGGGCGAACTAGCTCCTTCGACCCGCAAGTTCC
TTTCCGTGGCTTGGGCTTGCTCCATGTTGGTAACCACAATTCTTTCCGCG
TTTCGGACGCGGTTACACAACGTAAGCCGCATAATTCGCCTTTCAGTAAG
ACTGGTCATGACGGCTGCGCTCTGTTCCGGGATGGTGCAATCTAAAGTAT
CACCCATAGTACTAATGGTCGTATTTGCTCTGTTCGTTGTGGTGATCACA
ATATGCGACTTTATTGTTGAGAGGTATGAATCGCACAACATTTCACCATT
TGTGAAGAATGGTGAGCCGTTTTCGTCGTTTAAGCTGTACGAAAGTGCAG
CGTTAGGAATGCCATTGGATCTCAATGGCGACGTATCAAGCGTGCTGGAT
GAGCTCGAATGCAGAAACGCGGAAGCAGTGTATCCTCACCTAGAATGTTT
GAAACAAAGACTGTTGGTGAACGACGAGACAAGGCTTTTTCCCACTGAGT
CACATTTTGACACAAGCTCGGCGTCGACTGGGGCGGCTTCGACTTCTGAA
GAGGAATCAAGACCAGTGGCAGTCATCGTGGTGAGCTAA
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protein sequence of Ggra9812.t1

>Ggra9812.t1 ID=Ggra9812.t1|Name=Ggra9812.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=563bp
MSEQSPSKITVVETPLGGTASVRRTPTAESTHNANDLPPRVRSLKCVLYQ
TRHLMRYHFEKVDYVAQPSTSISSQDVFHILIVSVSQLIIFLPLRNEPIT
YTASERTLLLFWPLATFARIHIMLHTLWPPPNDGVALFYKFAVSLFALIF
SLTIPVAFSTTRVITALSAFFIIFIPSVILFHNSWCEPLLQDVTNRANQL
ALIAGAHMLVSAPYFATTFVSTTFGVKTMYWAGFAASVFMHFAPHAAFFW
LHRGRRRVQTHVPPRLFCNYEALRLMSHGCFVSACVLLLIHGVDLVQGTS
IRVSHVYGVAVLSLISLIALHSIHFIDTSASNHLNPSMIASVCSTFLFSV
LHLFILFFSTACAHLMSVASNAKGELAPSTRKFLSVAWACSMLVTTILSA
FRTRLHNVSRIIRLSVRLVMTAALCSGMVQSKVSPIVLMVVFALFVVVIT
ICDFIVERYESHNISPFVKNGEPFSSFKLYESAALGMPLDLNGDVSSVLD
ELECRNAEAVYPHLECLKQRLLVNDETRLFPTESHFDTSSASTGAASTSE
EESRPVAVIVVS*
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mRNA from alignment at tig00000236_pilon:65988..67776-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9812.t1 ID=Ggra9812.t1|Name=Ggra9812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1789bp|location=Sequence derived from alignment at tig00000236_pilon:65988..67776- (Gracilaria gracilis GNS1m male)
ATGTCTGAGCAGTCTCCCAGCAAGATTACCGTCGTTGAAACTCCACTTGG
TGGTACTGCTTCGGTGCGAAGAACTCCCACTGCTGAGTCGACTCACAATG
CTAACGATCTTCCCCCACGGGTTCGCAGTTTGAAATGTGTTTTGTACCAA
ACACGTCATTTGATGCGGTACCATTTCGAAAAAGTGGACTACGTCGCCCA
GCCATCAACAAGCATTTCGTCTCAAGATGTATTCCATATCCTTATCGTGT
CGGTCTCGCAGCTTATCATCTTTCTACCCCTAAGGAACGAACCTATCACA
TATACGGCGTCTGAGAGAACTCTGCTTCTGTTTTGGCCTCTTGCGACTTT
TGCGAGGATTCACATCATGCTCCACACTCTTTGGCCTCCTCCAAATGACG
GTGTTGCCCTTTTCTACAAGTTTGCAGTTTCTCTCTTTGCCCTCATCTTC
TCGCTGACTATTCCAGTGGCATTTTCGACGACGCGAGTAATAACAGCATT
GTCTGCCTTCTTCATTATATTTATACCATCTGTGATTCTATTCCATAACT
CATGGTGTGAACCTCTACTACAAGACGTCACCAACCGAGCGAACCAACTG
GCGCTCATTGCTGGAGCGCACATGCTGGTCTCTGCACCGTACTTTGCTAC
AACGTTTGTGTCTACAACGTTTGGGGTAAAGACAATGTATTGGGCTGGTT
TCGCTGCTTCAGTGTTCATGCACTTTGCACCCCATGCTGCGTTTTTCTGG
CTTCATCGAGGGAGAAGACGAGTACAGACGCACGTCCCTCCGCGCTTGTT
CTGTAATTATGAAGCGCTTCGATTGATGTCGCATGGCTGCTTTGTGAGTG
CATGCGTGTTGTTATTAATACATGGGGTCGGTACGTGTGCATCTACTTTC
AAGGTTCAACTCGGAAGAATCGATCAAATTCTTACCAGACATCGATTCAC
CTTCTATCCTTGGCTATTGGGTACCTGAAGATCTCGTACAGGGTACTTCA
ATACGCGTGAGTCATGTGTATGGAGTTGCGGTGTTGAGCTTAATTTCATT
GATCGCTCTTCACTCTATACATTTCATCGATACTTCAGCATCGAATCATC
TCAATCCGAGTATGATTGCTTCGGTGTGCAGCACGTTTCTGTTCAGCGTA
CTTCACTTGTTTATTTTGTTCTTCTCCACTGCATGTGCTCACTTGATGTC
GGTGGCTTCAAATGCTAAGGGCGAACTAGCTCCTTCGACCCGCAAGTTCC
TTTCCGTGGCTTGGGCTTGCTCCATGTTGGTAACCACAATTCTTTCCGCG
TTTCGGACGCGGTTACACAACGTAAGCCGCATAATTCGCCTTTCAGTAAG
ACTGGTCATGACGGCTGCGCTCTGTTCCGGGATGGTGCAATCTAAAGTAT
CACCCATAGTACTAATGGTCGTATTTGCTCTGTTCGTTGTGGTGATCACA
ATATGCGACTTTATTGTTGAGAGGTATGAATCGCACAACATTTCACCATT
TGTGAAGAATGGTGAGCCGTTTTCGTCGTTTAAGCTGTACGAAAGTGCAG
CGTTAGGAATGCCATTGGATCTCAATGGCGACGTATCAAGCGTGCTGGAT
GAGCTCGAATGCAGAAACGCGGAAGCAGTGTATCCTCACCTAGAATGTTT
GAAACAAAGACTGTTGGTGAACGACGAGACAAGGCTTTTTCCCACTGAGT
CACATTTTGACACAAGCTCGGCGTCGACTGGGGCGGCTTCGACTTCTGAA
GAGGAATCAAGACCAGTGGCAGTCATCGTGGTGAGCTAA
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Coding sequence (CDS) from alignment at tig00000236_pilon:65988..67776-

>Ggra9812.t1 ID=Ggra9812.t1|Name=Ggra9812.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000236_pilon:65988..67776- (Gracilaria gracilis GNS1m male)
ATGTCTGAGCAGTCTCCCAGCAAGATTACCGTCGTTGAAACTCCACTTGG
TGGTACTGCTTCGGTGCGAAGAACTCCCACTGCTGAGTCGACTCACAATG
CTAACGATCTTCCCCCACGGGTTCGCAGTTTGAAATGTGTTTTGTACCAA
ACACGTCATTTGATGCGGTACCATTTCGAAAAAGTGGACTACGTCGCCCA
GCCATCAACAAGCATTTCGTCTCAAGATGTATTCCATATCCTTATCGTGT
CGGTCTCGCAGCTTATCATCTTTCTACCCCTAAGGAACGAACCTATCACA
TATACGGCGTCTGAGAGAACTCTGCTTCTGTTTTGGCCTCTTGCGACTTT
TGCGAGGATTCACATCATGCTCCACACTCTTTGGCCTCCTCCAAATGACG
GTGTTGCCCTTTTCTACAAGTTTGCAGTTTCTCTCTTTGCCCTCATCTTC
TCGCTGACTATTCCAGTGGCATTTTCGACGACGCGAGTAATAACAGCATT
GTCTGCCTTCTTCATTATATTTATACCATCTGTGATTCTATTCCATAACT
CATGGTGTGAACCTCTACTACAAGACGTCACCAACCGAGCGAACCAACTG
GCGCTCATTGCTGGAGCGCACATGCTGGTCTCTGCACCGTACTTTGCTAC
AACGTTTGTGTCTACAACGTTTGGGGTAAAGACAATGTATTGGGCTGGTT
TCGCTGCTTCAGTGTTCATGCACTTTGCACCCCATGCTGCGTTTTTCTGG
CTTCATCGAGGGAGAAGACGAGTACAGACGCACGTCCCTCCGCGCTTGTT
CTGTAATTATGAAGCGCTTCGATTGATGTCGCATGGCTGCTTTGTGAGTG
CATGCGTGTTGTTATTAATACATGGGGTCGATCTCGTACAGGGTACTTCA
ATACGCGTGAGTCATGTGTATGGAGTTGCGGTGTTGAGCTTAATTTCATT
GATCGCTCTTCACTCTATACATTTCATCGATACTTCAGCATCGAATCATC
TCAATCCGAGTATGATTGCTTCGGTGTGCAGCACGTTTCTGTTCAGCGTA
CTTCACTTGTTTATTTTGTTCTTCTCCACTGCATGTGCTCACTTGATGTC
GGTGGCTTCAAATGCTAAGGGCGAACTAGCTCCTTCGACCCGCAAGTTCC
TTTCCGTGGCTTGGGCTTGCTCCATGTTGGTAACCACAATTCTTTCCGCG
TTTCGGACGCGGTTACACAACGTAAGCCGCATAATTCGCCTTTCAGTAAG
ACTGGTCATGACGGCTGCGCTCTGTTCCGGGATGGTGCAATCTAAAGTAT
CACCCATAGTACTAATGGTCGTATTTGCTCTGTTCGTTGTGGTGATCACA
ATATGCGACTTTATTGTTGAGAGGTATGAATCGCACAACATTTCACCATT
TGTGAAGAATGGTGAGCCGTTTTCGTCGTTTAAGCTGTACGAAAGTGCAG
CGTTAGGAATGCCATTGGATCTCAATGGCGACGTATCAAGCGTGCTGGAT
GAGCTCGAATGCAGAAACGCGGAAGCAGTGTATCCTCACCTAGAATGTTT
GAAACAAAGACTGTTGGTGAACGACGAGACAAGGCTTTTTCCCACTGAGT
CACATTTTGACACAAGCTCGGCGTCGACTGGGGCGGCTTCGACTTCTGAA
GAGGAATCAAGACCAGTGGCAGTCATCGTGGTGAGCTAA
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