Ggra9810.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9810.t1
Unique NameGgra9810.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Homology
BLAST of Ggra9810.t1 vs. uniprot
Match: A0A2V3IG75 (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG75_9FLOR)

HSP 1 Score: 219 bits (559), Expect = 3.400e-68
Identity = 115/168 (68.45%), Postives = 135/168 (80.36%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLAPLPVQPMVEHHDLTTFPTAPVELPPLVETLVKEGMPVSAVARAVSAACRVPKKLVYAYATKVKQKL 168
            +P  +FTFVGFLPR  E RR A+  VA I STVVLYEAPHRLLSTL AL  A     R  C+AREMTKKYE+FLRF+++ DA+ FY      PRGEFTIVLAP+PVQP+V+H DL T+PTAPVE+P LVE+L+K+G+PVS VARAVSAAC VPKKLVYAYATKVK+K+
Sbjct:  166 MPTPSFTFVGFLPRVGESRRKAIEHVAAIKSTVVLYEAPHRLLSTLKALQQAEGNG-RSCCLAREMTKKYEEFLRFDTISDAYEFYRTQTAKPRGEFTIVLAPIPVQPLVDH-DLITYPTAPVEIPSLVESLIKDGIPVSTVARAVSAACDVPKKLVYAYATKVKEKM 331          
BLAST of Ggra9810.t1 vs. uniprot
Match: R7QBJ1 (TP_methylase domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBJ1_CHOCR)

HSP 1 Score: 154 bits (389), Expect = 1.390e-42
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLAPLPVQPMVEHHDLTTFPTAPVELPPLVETLVKEGMPVSAVARAVSAACRVPKKLVYAYATKVKQKL 168
            LPL  FTF+GFLPRA  +RR A+ ++A +  TVV+YEAPHRLL TL AL    +   R VC+ARE+TKK+EQF+RF S  +A+ ++   +  PRGEFTIVL PL  +P     DL  +  A V++  L + LV+EG+P SAVAR +++A  VPKKLVYA+A+  K  +
Sbjct:  176 LPLGEFTFLGFLPRAGVERRKAMEKIAALEGTVVVYEAPHRLLVTLDALRGP-AFVGRHVCLAREVTKKWEQFMRFSSPAEAYEWFEGNDVEPRGEFTIVLGPLQ-RPEASRDDLNAYSKAEVDIAALAKALVEEGVPASAVARGIASAADVPKKLVYAFASSCKNSM 341          
BLAST of Ggra9810.t1 vs. uniprot
Match: A0A7S1TI06 (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TI06_9RHOD)

HSP 1 Score: 122 bits (307), Expect = 6.140e-30
Identity = 69/170 (40.59%), Postives = 105/170 (61.76%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLAPLPVQ--PMVEHHDLTTFPTAPVELPPLVETLVKEGMPVSAVARAVSAACRVPKKLVYAYATKVKQKL 168
            LP  +FTF+GFLP     RR A+ +++    +VV+YEAPHRLL  L+ LA+     DRPV +ARE+TK+YE+FLRF S+ +A+R+  A  + P GEFT V+ P P    P+ E  D  +     +    ++++L+ +G+  SA AR V+ A  +P+K VY  A ++ + L
Sbjct:  243 LPPGSFTFLGFLPSKGRSRRDAIEKISKFSQSVVIYEAPHRLLRLLSELAEDSGVCDRPVVLARELTKRYEEFLRFGSVDEANRWVEATAYEPIGEFTCVIGPPPKSRVPLDEIWDELSNNIVTLNASDMIQSLLDDGISPSAAARCVTKATSLPRKKVYKLALELSKSL 412          
BLAST of Ggra9810.t1 vs. uniprot
Match: A0A1G9QNH0 (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Dendrosporobacter quercicolus TaxID=146817 RepID=A0A1G9QNH0_9FIRM)

HSP 1 Score: 100 bits (249), Expect = 1.580e-22
Identity = 67/161 (41.61%), Postives = 93/161 (57.76%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLAPLPVQPMVEHHDLTTFPTAPVELPPL---VETLVKEGMPVSAVARAVSAACRVPKKLVY 158
            L   AFTF GFLP+  ++RRA +R +A   +T+VLYE+PHRL +TLA L D     DRP   ARE+TKK+E+F+R  +L    + ++  E+ PRGEFT+V+          + +    P A  ELPPL   V  LV  G       R V+A+  VP++ VY
Sbjct:  126 LDTTAFTFAGFLPKTGKKRRAFIRALADYQTTLVLYESPHRLKATLAELLD--ELGDRPAVAARELTKKFEEFIR-GTLKSLQQHFS--ENQPRGEFTLVIN--------GNDNENAEPLADAELPPLEQAVAALVSAGYDKKTAIREVAASRAVPRREVY 273          
BLAST of Ggra9810.t1 vs. uniprot
Match: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI000365545A (16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI000365545A)

HSP 1 Score: 94.4 bits (233), Expect = 3.870e-20
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLA 102
            LP   F F GFLP AR+QR A ++ +A    T+VLYEAPHRL  TL  L  A+   DRP+ VARE+TK+YE+F R        +F   AE +PRGEFT+VLA
Sbjct:  128 LPAQRFAFEGFLPTARKQRDAILQELAEERRTIVLYEAPHRLTRTLKDLL-AYVEPDRPIVVARELTKRYEEFWRGTVASALEQF---AERSPRGEFTLVLA 225          
BLAST of Ggra9810.t1 vs. uniprot
Match: J5HYF7 (Ribosomal RNA small subunit methyltransferase I n=4 Tax=Selenomonas TaxID=970 RepID=J5HYF7_9FIRM)

HSP 1 Score: 94.0 bits (232), Expect = 6.690e-20
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLA 102
            LPL  FTFVGFLPR  + R+  + RV     T+V YEAPHRL  TLA LA A   A+R  C ARE+TKK+E+FLR  +L +   +Y   E+ PRGEF IV+A
Sbjct:  127 LPLEGFTFVGFLPRRAKHRKELLARVRTYPETLVFYEAPHRLRETLALLA-AELGAERRACAARELTKKFEEFLRM-TLGELELYYK--ENEPRGEFVIVVA 224          
BLAST of Ggra9810.t1 vs. uniprot
Match: A0A7C5E8B5 (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5E8B5_9CHLR)

HSP 1 Score: 92.8 bits (229), Expect = 1.210e-19
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLA 102
            LP  AF ++G+LPR   +RRAA++R+A +  T++  EAPHRLL+TL  L       DRPV +ARE+TK YEQ  R  SL +A  ++   EHAPRGEFT+V+A
Sbjct:  123 LPTDAFLYLGYLPRQSAERRAALQRIADLPYTLIFLEAPHRLLATLTDLQKV--LGDRPVAIARELTKVYEQVWR-GSLSEALVYFH--EHAPRGEFTLVIA 219          
BLAST of Ggra9810.t1 vs. uniprot
Match: A0A3D0CSM1 (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D0CSM1_9CHLR)

HSP 1 Score: 90.1 bits (222), Expect = 9.620e-19
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLAPLP 105
            LP  +F ++GFLPR   QRRA +R VA    TVV YEAPHR++ TLA L+ A    +RPV +ARE+TK+YE+F R  +L +A    AA E  PRGEF I++   P
Sbjct:  107 LPTDSFVYLGFLPRKSGQRRAVLREVADQPRTVVFYEAPHRVVETLADLS-AELGEERPVVLARELTKRYEEFWR-GTLAEAQAHVAAQE--PRGEFVILVGGAP 207          
BLAST of Ggra9810.t1 vs. uniprot
Match: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Nodosilinea nodulosa TaxID=416001 RepID=UPI0003155ECB (16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Nodosilinea nodulosa TaxID=416001 RepID=UPI0003155ECB)

HSP 1 Score: 90.5 bits (223), Expect = 1.150e-18
Identity = 62/158 (39.24%), Postives = 87/158 (55.06%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIVLAPLPVQPMVEHHDLTTFPTAPVELPPLVETLVKEGMPVSAVARAVSAACRVPKKLVY 158
            LP   F F GFLP   ++R   +  +A    TVVLYEAPH+L+ TL  L     R DRP+C+ RE+TK++E+F R  +L DA   Y A   AP+GEFTIV     +Q     H + +      EL    E L+ +G+  +  +R ++ A   PKKL+Y
Sbjct:  135 LPSDRFIFEGFLPLKGKERTVRLEAIAQADCTVVLYEAPHKLVKTLEDLVGVLGR-DRPLCLGRELTKRFEEFWR-GTLGDALEHYQAT--APKGEFTIV-----IQGATREHPVLSEQAIKAEL----EHLLHQGISRTDASRQLAKATGQPKKLIY 279          
BLAST of Ggra9810.t1 vs. uniprot
Match: A0A1X6NSF7 (TP_methylase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSF7_PORUM)

HSP 1 Score: 87.8 bits (216), Expect = 3.190e-18
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 0
Query:    1 LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALADAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAA-EHAPRGEFTIVLAP 103
            L  +A+TFVGFLP  R +R   + R+A + +T+VLYEAPHR+ +TLAA+A+  +  DR + VARE+TK +E+F  F     A   Y A  +   +GEF +VL P
Sbjct:   93 LDTSAWTFVGFLPTRRSERAKELGRLAAVSTTLVLYEAPHRVATTLAAMAEVPALRDRQLAVARELTKVHEEFRLFAGAGAAAEHYGACGKGVVKGEFVLVLGP 196          
The following BLAST results are available for this feature:
BLAST of Ggra9810.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IG753.400e-6868.45Ribosomal RNA small subunit methyltransferase I n=... [more]
R7QBJ11.390e-4250.60TP_methylase domain-containing protein n=1 Tax=Cho... [more]
A0A7S1TI066.140e-3040.59Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A1G9QNH01.580e-2241.61Ribosomal RNA small subunit methyltransferase I n=... [more]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI000365545A3.870e-2051.9616S rRNA (cytidine(1402)-2'-O)-methyltransferase n... [more]
J5HYF76.690e-2052.94Ribosomal RNA small subunit methyltransferase I n=... [more]
A0A7C5E8B51.210e-1950.98Ribosomal RNA small subunit methyltransferase I n=... [more]
A0A3D0CSM19.620e-1950.48Ribosomal RNA small subunit methyltransferase I n=... [more]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Nodosilinea nodulosa TaxID=416001 RepID=UPI0003155ECB1.150e-1839.2416S rRNA (cytidine(1402)-2'-O)-methyltransferase n... [more]
A0A1X6NSF73.190e-1845.19TP_methylase domain-containing protein n=1 Tax=Por... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014776Tetrapyrrole methylase, subdomain 2GENE3D3.30.950.10coord: 1..105
e-value: 3.0E-26
score: 93.7
NoneNo IPR availablePANTHERPTHR46111:SF1RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Icoord: 2..167
IPR008189rRNA small subunit methyltransferase IPANTHERPTHR46111RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Icoord: 2..167
IPR035996Tetrapyrrole methylase superfamilySUPERFAMILY53790Tetrapyrrole methylasecoord: 2..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000236_piloncontigtig00000236_pilon:63430..63963 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9810.t1Ggra9810.t1Gracilaria gracilis GNS1m malemRNAtig00000236_pilon 63430..63963 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9810.t1 ID=Ggra9810.t1|Name=Ggra9810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALA
DAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIV
LAPLPVQPMVEHHDLTTFPTAPVELPPLVETLVKEGMPVSAVARAVSAAC
RVPKKLVYAYATKVKQKLNHHTNSTVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0147764pyrrole_Mease_sub2
IPR008189rRNA_ssu_MeTfrase_I
IPR0359964pyrrol_Methylase_sf