Ggra9810.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9810.t1
Unique NameGgra9810.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000236_piloncontigtig00000236_pilon:63430..63963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog679201.HMPREF9334_01687
Preferred namersmI
PFAMsTP_methylase
Max annot lvl909932|Negativicutes
KEGG koko:K07056
Evalue1.65e-21
EggNOG OGsCOG0313@1|root,COG0313@2|Bacteria,1TP6U@1239|Firmicutes,4H22J@909932|Negativicutes
EC2.1.1.198
DescriptionCatalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
COG categoryH
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9810Ggra9810Gracilaria gracilis GNS1m malegenetig00000236_pilon 63430..63963 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9810.t1.start1Ggra9810.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000236_pilon 63430..63432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9810.t1.CDS1Ggra9810.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000236_pilon 63430..63963 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9810.t1.exon1Ggra9810.t1.exon1Gracilaria gracilis GNS1m maleexontig00000236_pilon 63430..63963 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9810.t1.stop1Ggra9810.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000236_pilon 63961..63963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9810.t1Ggra9810.t1Gracilaria gracilis GNS1m malepolypeptidetig00000236_pilon 63430..63963 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9810.t1 ID=Ggra9810.t1|Name=Ggra9810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALA
DAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIV
LAPLPVQPMVEHHDLTTFPTAPVELPPLVETLVKEGMPVSAVARAVSAAC
RVPKKLVYAYATKVKQKLNHHTNSTVE*
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spliced messenger RNA

>Ggra9810.t1 ID=Ggra9810.t1|Name=Ggra9810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000236_pilon:63430..63963+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCGCTGGCCGCCTTCACCTTTGTGGGCTTCCTGCcgcgcgcgcgcga
gcagcgtcgcgccgccgtgcgccgcgtcgcCCACATCCACTCCACCGTCG
TGCTGTACGAGGCGCCGCACCGCCTGCTTTCCACGCTCGCCGCGCTTGCG
GATGCCCACTCGCGCGCCGACCGCCCCGTGTGCGTGGCGCGCGAGATGAC
CAAAAAGTATGAGCAGTTTCTCAGGTTCGAGTCGCTGCTGGACGCCCATC
GCTTCTACGCCGCCGCTGAGCATGCGCCCAGGGGCGAGTTTACCATTGTG
CTGGCGCCGTTGCCGGTGCAGCCCATGGTGGAGCACCACGATCTCACCAC
GTTTCCCACCGCGCCCGTCGAGCTGCCGCCGCTGGTGGAGACGCTCGTCA
AGGAGGGCATGCCCGTCAGCGCCGTTGCGAGGGCCGTCTCGGCTGCGTGC
CGCGTGCCCAAGAAGCTTGTGTACGCCTACGCTACCAAAGTTAAACAAAA
GCTCAACCACCACACCAACAGTACCGTTGAATGA
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protein sequence of Ggra9810.t1

>Ggra9810.t1 ID=Ggra9810.t1|Name=Ggra9810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
LPLAAFTFVGFLPRAREQRRAAVRRVAHIHSTVVLYEAPHRLLSTLAALA
DAHSRADRPVCVAREMTKKYEQFLRFESLLDAHRFYAAAEHAPRGEFTIV
LAPLPVQPMVEHHDLTTFPTAPVELPPLVETLVKEGMPVSAVARAVSAAC
RVPKKLVYAYATKVKQKLNHHTNSTVE*
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mRNA from alignment at tig00000236_pilon:63430..63963+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9810.t1 ID=Ggra9810.t1|Name=Ggra9810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000236_pilon:63430..63963+ (Gracilaria gracilis GNS1m male)
TTGCCGCTGGCCGCCTTCACCTTTGTGGGCTTCCTGCcgcgcgcgcgcga
gcagcgtcgcgccgccgtgcgccgcgtcgcCCACATCCACTCCACCGTCG
TGCTGTACGAGGCGCCGCACCGCCTGCTTTCCACGCTCGCCGCGCTTGCG
GATGCCCACTCGCGCGCCGACCGCCCCGTGTGCGTGGCGCGCGAGATGAC
CAAAAAGTATGAGCAGTTTCTCAGGTTCGAGTCGCTGCTGGACGCCCATC
GCTTCTACGCCGCCGCTGAGCATGCGCCCAGGGGCGAGTTTACCATTGTG
CTGGCGCCGTTGCCGGTGCAGCCCATGGTGGAGCACCACGATCTCACCAC
GTTTCCCACCGCGCCCGTCGAGCTGCCGCCGCTGGTGGAGACGCTCGTCA
AGGAGGGCATGCCCGTCAGCGCCGTTGCGAGGGCCGTCTCGGCTGCGTGC
CGCGTGCCCAAGAAGCTTGTGTACGCCTACGCTACCAAAGTTAAACAAAA
GCTCAACCACCACACCAACAGTACCGTTGAATGA
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Coding sequence (CDS) from alignment at tig00000236_pilon:63430..63963+

>Ggra9810.t1 ID=Ggra9810.t1|Name=Ggra9810.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000236_pilon:63430..63963+ (Gracilaria gracilis GNS1m male)
TTGCCGCTGGCCGCCTTCACCTTTGTGGGCTTCCTGCcgcgcgcgcgcga
gcagcgtcgcgccgccgtgcgccgcgtcgcCCACATCCACTCCACCGTCG
TGCTGTACGAGGCGCCGCACCGCCTGCTTTCCACGCTCGCCGCGCTTGCG
GATGCCCACTCGCGCGCCGACCGCCCCGTGTGCGTGGCGCGCGAGATGAC
CAAAAAGTATGAGCAGTTTCTCAGGTTCGAGTCGCTGCTGGACGCCCATC
GCTTCTACGCCGCCGCTGAGCATGCGCCCAGGGGCGAGTTTACCATTGTG
CTGGCGCCGTTGCCGGTGCAGCCCATGGTGGAGCACCACGATCTCACCAC
GTTTCCCACCGCGCCCGTCGAGCTGCCGCCGCTGGTGGAGACGCTCGTCA
AGGAGGGCATGCCCGTCAGCGCCGTTGCGAGGGCCGTCTCGGCTGCGTGC
CGCGTGCCCAAGAAGCTTGTGTACGCCTACGCTACCAAAGTTAAACAAAA
GCTCAACCACCACACCAACAGTACCGTTGAATGA
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